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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Rattus norvegicus and rno-miR-9

872 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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Snx7 ENSRNOT00000022947 sorting nexin 7 [Source:RefSeq_peptide;Acc:NP_001012083]
17.0493 -15.38 3.65027e-11 372 15 8 47 [+] picture button
Cnot6l_predicted ENSRNOT00000002843 CCR4-NOT transcription complex, subunit 6-like [Source:MarkerSymbol;Acc:MGI:2443154]CCR4-NOT transcription complex, subunit 6-like [Source:MarkerSymbol;Acc:MGI:2443154] BY ORTHOLOGY TO:ENSMUST00000036646
16.7094 -18.7 1.04191e-08 700 14 9 23 [+] picture button
Onecut1 ENSRNOT00000010738 Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family member 1). [Source:Uniprot/SWISSPROT;Acc:P70512]
17.1755 -17.06 1.53219e-08 703 18 12 25 [+] picture button
LOC361335 ENSRNOT00000024704 LOC361335 protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q5RKG4]
17.8598 -23.11 3.15228e-08 700 16 9 23 [+] picture button
Ap3b1_predicted ENSRNOT00000014278 PREDICTED: Gallus gallus similar to AP-3 complex beta3A subunit (LOC427646), mRNA. [Source:RefSeq_dna;Acc:XR_027204]PREDICTED: Gallus gallus similar to AP-3 complex beta3A subunit (LOC427646), mRNA. [Source:RefSeq_dna;Acc:XR_027204] BY ORTHOLOGY TO:ENSGALT00000006998
17.4554 -16.25 5.58364e-08 562 12 9 25 [+] picture button
Tgfbr2m1Mcwi ENSRNOT00000017950 TGF-beta receptor type-2 precursor (EC 2.7.11.30) (TGF-beta receptor type II) (TGFR-2) (TGF-beta type II receptor) (Transforming growth factor-beta receptor type II) (TbetaR-II). [Source:Uniprot/SWISSPROT;Acc:P38438]
19.2323 -22.31 6.70008e-08 124 6 2 15 [+] picture button
Hars2_predicted ENSRNOT00000012510 Probable D-tyrosyl-tRNA(Tyr) deacylase 1 (EC 3.1.-.-). [Source:Uniprot/SWISSPROT;Acc:Q2T9V8]Probable D-tyrosyl-tRNA(Tyr) deacylase 1 (EC 3.1.-.-). [Source:Uniprot/SWISSPROT;Acc:Q2T9V8] BY ORTHOLOGY TO:ENSBTAT00000011800
17.196 -15.71 7.81308e-08 170 6 4 13 [+] picture button
LOC246295 ENSRNOT00000031138 Glycine-, glutamate-, thienylcyclohexylpiperidine-binding protein. [Source:Uniprot/SPTREMBL;Acc:Q62965]
17.3436 -18.28 1.21619e-07 700 19 5 31 [+] picture button
LOC683577 ENSRNOT00000061721 Teneurin-1 (Ten-1) (Tenascin-M1) (Ten-m1) (Protein Odd Oz/ten-m homolog 1). [Source:Uniprot/SWISSPROT;Acc:Q9UKZ4]Teneurin-1 (Ten-1) (Tenascin-M1) (Ten-m1) (Protein Odd Oz/ten-m homolog 1). [Source:Uniprot/SWISSPROT;Acc:Q9UKZ4] BY ORTHOLOGY TO:SINFRUT00000128209
16.6913 -14.39 1.38986e-07 700 15 9 24 [+] picture button
LOC682630 ENSRNOT00000002188 hypothetical protein LOC564277 [Source:RefSeq_peptide;Acc:NP_001070849]hypothetical protein LOC564277 [Source:RefSeq_peptide;Acc:NP_001070849] BY ORTHOLOGY TO:ENSDART00000088261
16.4145 -16.05 1.83115e-07 700 10 5 17 [+] picture button
Mppe1_predicted ENSRNOT00000025164 hypothetical protein LOC550396 [Source:RefSeq_peptide;Acc:NP_001017701]hypothetical protein LOC550396 [Source:RefSeq_peptide;Acc:NP_001017701] BY ORTHOLOGY TO:ENSDART00000066783
16.4239 -21.35 4.44619e-07 665 15 5 20 [+] picture button
Gmeb2 ENSRNOT00000018237 Glucocorticoid modulatory element-binding protein 2 (GMEB-2). [Source:Uniprot/SWISSPROT;Acc:O88873]
17.0828 -16.28 5.08189e-07 244 9 7 24 [+] picture button
FRMD6_RAT ENSRNOT00000009610 FERM domain-containing protein 6 (FERM domain-containing protein 163SCII) (Fragment). [Source:Uniprot/SWISSPROT;Acc:Q8VII0]
16.9508 -22.36 5.52447e-07 700 20 5 40 [+] picture button
Zfp395_predicted ENSRNOT00000019034 Zinc finger protein 395 (Papillomavirus-binding factor) (Papillomavirus regulatory factor 1) (PRF-1) (Huntington disease gene regulatory region-binding protein 2) (HDBP-2) (HD gene regulatory region-binding protein 2) (HD-regulating factor 2) (HDRF-2). [Source:Uniprot/SWISSPROT;Acc:Q9H8N7]Zinc finger protein 395 (Papillomavirus-binding factor) (Papillomavirus regulatory factor 1) (PRF-1) (Huntington disease gene regulatory region-binding protein 2) (HDBP-2) (HD gene regulatory region-binding protein 2) (HD-regulating factor 2) (HDRF-2). [Source:Uniprot/SWISSPROT;Acc:Q9H8N7] BY ORTHOLOGY TO:ENSMMUT00000010471
16.744 -20.89 1.53248e-06 700 10 7 16 [+] picture button
Igf2bp3 ENSRNOT00000012100 insulin-like growth factor 2 mRNA binding protein 3 [Source:RefSeq_peptide;Acc:NP_001041353]
16.3009 -15.54 1.78177e-06 700 12 6 16 [+] picture button
Rnf111_predicted ENSRNOT00000017918 Ring finger protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q90ZT8]Ring finger protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q90ZT8] BY ORTHOLOGY TO:ENSGALT00000034463
16.1044 -20.54 1.96431e-06 1544 7 13 8 [+] picture button
Lect1 ENSRNOT00000017400 Chondromodulin-1 precursor (Chondromodulin-I) (ChM-I) (Leukocyte cell- derived chemotaxin 1) [Contains: Chondrosurfactant protein (CH-SP)]. [Source:Uniprot/SWISSPROT;Acc:O70367]
18.5536 -18.42 2.08598e-06 276 12 7 29 [+] picture button
Galnt3 ENSRNOT00000007615 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 [Source:RefSeq_peptide;Acc:NP_001015032]
17.7703 -21.76 2.08983e-06 735 16 7 21 [+] picture button
RGD1559594_predicted ENSRNOT00000047755 PR domain zinc finger protein 6 (PR domain-containing protein 6) (Fragment). [Source:Uniprot/SWISSPROT;Acc:Q9NQX0]PR domain zinc finger protein 6 (PR domain-containing protein 6) (Fragment). [Source:Uniprot/SWISSPROT;Acc:Q9NQX0] BY ORTHOLOGY TO:ENSCAFT00000036515
16.6209 -16.57 2.10081e-06 700 15 10 24 [+] picture button
Cnnm2 ENSRNOT00000054699 cyclin M2 [Source:RefSeq_peptide;Acc:NP_001011942]
17.9498 -21.61 2.38192e-06 741 12 6 13 [+] picture button
Cntn3 ENSRNOT00000008221 Contactin-3 precursor (Brain-derived immunoglobulin superfamily protein 1) (BIG-1). [Source:Uniprot/SWISSPROT;Acc:Q62682]
17.2014 -18.47 5.82556e-06 700 11 5 16 [+] picture button
RGD1309522 ENSRNOT00000039344 Protein aurora borealis. [Source:Uniprot/SWISSPROT;Acc:Q5M864]
16.8566 -11.64 6.88784e-06 215 12 6 27 [+] picture button
Eppb9_predicted ENSRNOT00000003402 CG14870-PA [Source:RefSeq_peptide;Acc:NP_650470]CG14870-PA [Source:RefSeq_peptide;Acc:NP_650470] BY ORTHOLOGY TO:CG14870-RA
16.8566 -17.47 7.02975e-06 136 6 4 18 [+] picture button
Kif13a ENSRNOT00000001977 kinesin family member 13A [Source:MarkerSymbol;Acc:MGI:1098264]
16.9307 -17.1 7.74957e-06 700 16 4 28 [+] picture button
LOC501665 ENSRNOT00000056315 similar to protein P3 (LOC501665), mRNA [Source:RefSeq_dna;Acc:NM_001024368]
16.5172 -12.19 9.537e-06 210 10 8 35 [+] picture button
RGD1559961_predicted ENSRNOT00000003886 myosin head domain containing 1 isoform 1 [Source:RefSeq_peptide;Acc:NP_079385]myosin head domain containing 1 isoform 1 [Source:RefSeq_peptide;Acc:NP_079385] BY ORTHOLOGY TO:ENSOANT00000018253
16.5071 -19.4 9.70567e-06 624 23 4 33 [+] picture button
Dnajc3 ENSRNOT00000014182 DnaJ homolog subfamily C member 3 (Interferon-induced, double-stranded RNA-activated protein kinase inhibitor) (Protein kinase inhibitor p58) (Protein kinase inhibitor of 58 kDa). [Source:Uniprot/SWISSPROT;Acc:Q9R0T3]
16.208 -14.56 1.01124e-05 700 16 6 25 [+] picture button
Phf19 ENSRNOT00000025528 PHD finger protein 19 [Source:MarkerSymbol;Acc:MGI:1921266]
16.1048 -18.38 1.06527e-05 700 22 4 30 [+] picture button
RGD1305778 ENSRNOT00000015020 Phosphatidylcholine:ceramide cholinephosphotransferase 2 (EC 2.7.8.27) (Sphingomyelin synthase 2). [Source:Uniprot/SWISSPROT;Acc:Q4JM44]
17.0185 -17.04 1.27595e-05 370 13 8 29 [+] picture button
ENSRNOT00000032154 Rho-related GTP-binding protein RhoQ precursor (Ras-related GTP- binding protein TC10). [Source:Uniprot/SWISSPROT;Acc:P17081]Rho-related GTP-binding protein RhoQ precursor (Ras-related GTP- binding protein TC10). [Source:Uniprot/SWISSPROT;Acc:P17081] BY ORTHOLOGY TO:SINFRUT00000137980
16.6209 -19.46 1.3714e-05 700 17 4 29 [+] picture button
RGD1562576_predicted ENSRNOT00000006952 Ran-binding protein 17. [Source:Uniprot/SWISSPROT;Acc:Q9H2T7]Ran-binding protein 17. [Source:Uniprot/SWISSPROT;Acc:Q9H2T7] BY ORTHOLOGY TO:ENSOANT00000012419
17.0541 -15.97 1.4108e-05 700 18 4 24 [+] picture button
Rutbc2_predicted ENSRNOT00000000898 Novel protein similar to vertebrate containing RUN and TBC1 domain (Fragment). [Source:Uniprot/SPTREMBL;Acc:A2BHB6]Novel protein similar to vertebrate containing RUN and TBC1 domain (Fragment). [Source:Uniprot/SPTREMBL;Acc:A2BHB6] BY ORTHOLOGY TO:ENSDART00000047841
16.3112 -16.68 1.79982e-05 700 14 5 22 [+] picture button
Whsc2 ENSRNOT00000021593 Wolf-Hirschhorn syndrome candidate 2 [Source:RefSeq_peptide;Acc:NP_001008340]
18.4539 -21.87 1.90169e-05 559 14 5 29 [+] picture button
Entpd5 ENSRNOT00000041163 ectonucleoside triphosphate diphosphohydrolase 5 [Source:RefSeq_peptide;Acc:NP_955426]
17.8748 -28.15 1.92065e-05 305 13 4 45 [+] picture button
Ccl19_predicted ENSRNOT00000020982 Small inducible cytokine A19 precursor (CCL19) (Macrophage inflammatory protein 3 beta) (MIP-3-beta) (EBI1-ligand chemokine) (ELC) (Beta chemokine exodus-3) (CK beta-11). [Source:Uniprot/SWISSPROT;Acc:Q99731]Small inducible cytokine A19 precursor (CCL19) (Macrophage inflammatory protein 3 beta) (MIP-3-beta) (EBI1-ligand chemokine) (ELC) (Beta chemokine exodus-3) (CK beta-11). [Source:Uniprot/SWISSPROT;Acc:Q99731] BY ORTHOLOGY TO:ENSGALT00000009402
17.0828 -18.55 1.99139e-05 205 10 5 35 [+] picture button
Diap1 ENSRNOT00000026785 diaphanous homolog 1 (Drosophila) [Source:MarkerSymbol;Acc:MGI:1194490]
16.7242 -14.26 2.19043e-05 700 18 6 26 [+] picture button
Coq6 ENSRNOT00000014913 coenzyme Q6 homolog [Source:RefSeq_peptide;Acc:NP_001011983]
17.3091 -14.44 2.29729e-05 282 14 3 45 [+] picture button
Pmp22 ENSRNOT00000041606 Peripheral myelin protein 22 (PMP-22) (CD25 protein) (SR13 myelin protein) (Schwann cell membrane glycoprotein) (SAG). [Source:Uniprot/SWISSPROT;Acc:P25094]
16.2042 -18.56 2.59043e-05 1127 12 6 12 [+] picture button
1110001D15Rik ENSRNOT00000040880 RIKEN cDNA 1110001D15 gene [Source:MarkerSymbol;Acc:MGI:1915803]
16.434 -19.25 2.61133e-05 700 14 5 23 [+] picture button
Ubxd8 ENSRNOT00000023701 UBX domain-containing protein 8. [Source:Uniprot/SWISSPROT;Acc:Q5BK32]
17.5595 -13.98 2.98766e-05 595 14 4 21 [+] picture button
RGD1563417_predicted ENSRNOT00000000163 Low density lipoprotein receptor adapter protein 1 (Autosomal recessive hypercholesterolemia protein). [Source:Uniprot/SWISSPROT;Acc:Q5SW96]Low density lipoprotein receptor adapter protein 1 (Autosomal recessive hypercholesterolemia protein). [Source:Uniprot/SWISSPROT;Acc:Q5SW96] BY ORTHOLOGY TO:ENSMMUT00000032904
16.5177 -16.42 3.34828e-05 700 15 2 26 [+] picture button
Cc2d1b ENSRNOT00000011670 Coiled-coil and C2 domain-containing protein 1B. [Source:Uniprot/SWISSPROT;Acc:Q5FVK6]
16.2846 -16.79 3.38322e-05 647 17 6 38 [+] picture button
Slc27a4 ENSRNOT00000019500 Slc27a4 protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q5BJL7]
16.7525 -23.89 3.6492e-05 746 14 4 21 [+] picture button
Efemp1 ENSRNOT00000004764 EGF-containing fibulin-like extracellular matrix protein 1 precursor (Fibulin-3) (FIBL-3) (T16 protein). [Source:Uniprot/SWISSPROT;Acc:O35568]
17.5372 -16.28 3.87143e-05 431 17 10 29 [+] picture button
RGD1306947 ENSRNOT00000005917 Mitogen-activated protein kinase organizer 1 (MAPK organizer 1). [Source:Uniprot/SWISSPROT;Acc:Q5BLX8]
17.3091 -17.85 3.95348e-05 151 6 6 26 [+] picture button
Fgf10 ENSRNOT00000016485 Fibroblast growth factor 10 precursor (FGF-10). [Source:Uniprot/SWISSPROT;Acc:P70492]
17.6629 -17.3 4.35599e-05 700 19 10 36 [+] picture button
Rpap1 ENSRNOT00000007299 RNA polymerase II associated protein 1. [Source:Uniprot/SWISSPROT;Acc:Q3T1I9]
17.4222 -19.87 4.40533e-05 62 5 5 5 [+] picture button
RGD1305062 ENSRNOT00000050902 RGD1305062 protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q5BJP8]
16.5177 -16 4.41634e-05 700 18 3 27 [+] picture button
Calb2 ENSRNOT00000022943 Calretinin (CR). [Source:Uniprot/SWISSPROT;Acc:P47728]
16.4477 -12.43 4.72945e-05 572 15 6 29 [+] picture button
Itga1 ENSRNOT00000016353 Integrin alpha-1 precursor (Laminin and collagen receptor) (VLA-1) (CD49a antigen). [Source:Uniprot/SWISSPROT;Acc:P18614]
17.6796 -22.33 4.77402e-05 700 12 2 12 [+] picture button

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Download table: GFF TXT
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