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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Rattus norvegicus and rno-miR-29c*

897 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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Itgb6 ENSRNOT00000011030 Integrin beta-6 precursor. [Source:Uniprot/SWISSPROT;Acc:Q6AYF4]
14.5084 -16.35 1e-06 385 14 7 30 [+] picture button
OTTMUSG00000007209 ENSRNOT00000060585 predicted gene, OTTMUSG00000007209 [Source:MarkerSymbol;Acc:MGI:3651567]
15.4314 -14.75 1e-06 700 15 1 19 [+] picture button
RGD1311713_predicted ENSRNOT00000027909 sprouty-related, EVH1 domain containing 3 [Source:MarkerSymbol;Acc:MGI:2142186]sprouty-related, EVH1 domain containing 3 [Source:MarkerSymbol;Acc:MGI:2142186] BY ORTHOLOGY TO:ENSMUST00000048923
17.7347 -20.73 1e-06 700 13 6 10 [+] picture button
RGD1562557_predicted ENSRNOT00000051685 CDNA FLJ11132 fis, clone PLACE1006335. [Source:Uniprot/SPTREMBL;Acc:Q9NUU3]CDNA FLJ11132 fis, clone PLACE1006335. [Source:Uniprot/SPTREMBL;Acc:Q9NUU3] BY ORTHOLOGY TO:ENSMMUT00000014685
15.2362 -23.36 5.19251e-06 279 15 4 53 [+] picture button
RGD1560754_predicted ENSRNOT00000017570 IQ motif containing F5 [Source:MarkerSymbol;Acc:MGI:1922720]IQ motif containing F5 [Source:MarkerSymbol;Acc:MGI:1922720] BY ORTHOLOGY TO:ENSMUST00000085113
16.179 -25.93 8.82667e-06 700 13 2 15 [+] picture button
Rad51ap1_predicted ENSRNOT00000049662 similar to RAD51 associated protein 1 (LOC689055), mRNA [Source:RefSeq_dna;Acc:NM_001079711]
16.085 -19.59 1.60365e-05 700 17 5 27 [+] picture button
ENSRNOT00000038556 pleckstrin homology domain containing, family N member 1 [Source:RefSeq_peptide;Acc:NP_115505]pleckstrin homology domain containing, family N member 1 [Source:RefSeq_peptide;Acc:NP_115505] BY ORTHOLOGY TO:ENSMODT00000028707
15.5567 -23.64 1.78035e-05 700 21 2 25 [+] picture button
Pdzd11_predicted ENSRNOT00000003872 MGC89018 protein. [Source:Uniprot/SPTREMBL;Acc:Q6DJ50]MGC89018 protein. [Source:Uniprot/SPTREMBL;Acc:Q6DJ50] BY ORTHOLOGY TO:ENSXETT00000021212
14.9908 -20.41 2.47953e-05 517 14 3 20 [+] picture button
RGD1562220_predicted ENSRNOT00000060923 NOT ANNOTATED
15.0382 -13.91 2.69339e-05 700 12 1 14 [+] picture button
Kif20a_predicted ENSRNOT00000033784 kinesin family member 20A [Source:MarkerSymbol;Acc:MGI:1201682]kinesin family member 20A [Source:MarkerSymbol;Acc:MGI:1201682] BY ORTHOLOGY TO:ENSMUST00000003877
15.3499 -17.84 2.77039e-05 178 9 6 33 [+] picture button
Emb ENSRNOT00000015306 Embigin precursor. [Source:Uniprot/SWISSPROT;Acc:O88775]
15.2983 -18.87 3.22301e-05 376 19 5 51 [+] picture button
Pkd1l2 ENSRNOT00000049533 polycystic kidney disease 1 like 2 [Source:MarkerSymbol;Acc:MGI:2664668]
15.2365 -25.62 3.4329e-05 700 14 1 28 [+] picture button
Irs3 ENSRNOT00000001874 insulin receptor substrate 3 [Source:RefSeq_peptide;Acc:NP_114463]
14.6677 -17.59 3.70229e-05 296 13 2 30 [+] picture button
Q8CIE4_MOUSE ENSRNOT00000006376 Plec1 protein. [Source:Uniprot/SPTREMBL;Acc:Q8CIE4]
16.7144 -20 5.12836e-05 284 13 4 39 [+] picture button
Ddx46 ENSRNOT00000029885 Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-) (DEAD box protein 46) (Helicase of 117.4 kDa). [Source:Uniprot/SWISSPROT;Acc:Q62780]
14.8951 -20.59 5.39812e-05 287 14 5 59 [+] picture button
Ddx46 ENSRNOT00000050163 Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-) (DEAD box protein 46) (Helicase of 117.4 kDa). [Source:Uniprot/SWISSPROT;Acc:Q62780]
14.8951 -20.59 5.39812e-05 280 15 1 43 [+] picture button
Satb1 ENSRNOT00000017556 special AT-rich sequence binding protein 1 [Source:RefSeq_peptide;Acc:NP_001012129]
15.7757 -18.88 6.40168e-05 494 12 6 18 [+] picture button
Nin_predicted ENSRNOT00000007529 Ninein (hNinein) (Glycogen synthase kinase 3 beta-interacting protein) (GSK3B-interacting protein). [Source:Uniprot/SWISSPROT;Acc:Q8N4C6]Ninein (hNinein) (Glycogen synthase kinase 3 beta-interacting protein) (GSK3B-interacting protein). [Source:Uniprot/SWISSPROT;Acc:Q8N4C6] BY ORTHOLOGY TO:ENSXETT00000035937
16.0753 -15.94 6.89713e-05 700 20 2 32 [+] picture button
RGD1564575_predicted ENSRNOT00000049240 transmembrane protein 89 (TMEM89), mRNA [Source:RefSeq_dna;Acc:NM_001008269]transmembrane protein 89 (TMEM89), mRNA [Source:RefSeq_dna;Acc:NM_001008269] BY ORTHOLOGY TO:ENSMMUT00000020620
15.7444 -15.61 7.45007e-05 700 13 1 14 [+] picture button
LOC364172 ENSRNOT00000017180 similar to eukaryotic translation elongation factor 1 alpha 2 (LOC364172), mRNA [Source:RefSeq_dna;Acc:XR_006078]
15.3499 -11.96 8.38502e-05 310 11 2 24 [+] picture button
Eef1a1 ENSRNOT00000013608 Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1 A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu). [Source:Uniprot/SWISSPROT;Acc:P62630]
15.3499 -11.96 8.38502e-05 281 11 3 25 [+] picture button
ENSRNOT00000045177 NOT ANNOTATED
15.8679 -19.09 9.21803e-05 700 9 1 8 [+] picture button
ENSRNOT00000042280 NOT ANNOTATED
15.8679 -19.09 9.21803e-05 700 10 1 9 [+] picture button
Prlpm ENSRNOT00000022093 Placental prolactin-like protein M precursor (PRL-like protein M) (PLP-M). [Source:Uniprot/SWISSPROT;Acc:Q9JII3]
17.1692 -20.15 0.000102245 285 14 1 28 [+] picture button
Prdx1 ENSRNOT00000023132 Peroxiredoxin-1 (EC 1.11.1.15) (Thioredoxin peroxidase 2) (Thioredoxin-dependent peroxide reductase 2) (Heme-binding 23 kDa protein) (HBP23). [Source:Uniprot/SWISSPROT;Acc:Q63716]
14.4403 -11.01 0.000114595 235 11 1 29 [+] picture button
RGD1560796_predicted ENSRNOT00000041453 suppressor of hairy wing homolog 4 (Drosophila) [Source:MarkerSymbol;Acc:MGI:2384583]suppressor of hairy wing homolog 4 (Drosophila) [Source:MarkerSymbol;Acc:MGI:2384583] BY ORTHOLOGY TO:ENSMUST00000098576
14.5196 -22.48 0.00011939 700 11 4 20 [+] picture button
Tbcd_predicted ENSRNOT00000054913 F16D3.4 encodes an ortholog of human TUBULIN-SPECIFIC CHAPERONE D (TBCD. OMIM:604649), also known as tubulin-folding cofactor D. F16D3.4 may be a ligand and effector of the ARL2 ortholog EVL-20. [Source: WormBase]F16D3.4 encodes an ortholog of human TUBULIN-SPECIFIC CHAPERONE D (TBCD. OMIM:604649), also known as tubulin-folding cofactor D. F16D3.4 may be a ligand and effector of the ARL2 ortholog EVL-20. [Source: WormBase] BY ORTHOLOGY TO:F16D3.4
16.179 -22.14 0.000125727 700 18 2 24 [+] picture button
ENSRNOT00000042502 NOT ANNOTATED
14.4159 -21.17 0.000126148 700 6 1 5 [+] picture button
ENSRNOT00000041047 NOT ANNOTATED
14.4159 -21.17 0.000126148 700 5 1 4 [+] picture button
Fgd2_predicted ENSRNOT00000041665 FYVE, RhoGEF and PH domain containing 2 [Source:MarkerSymbol;Acc:MGI:1347084]FYVE, RhoGEF and PH domain containing 2 [Source:MarkerSymbol;Acc:MGI:1347084] BY ORTHOLOGY TO:ENSMUST00000024810
15.5397 -23.62 0.00013338 622 14 2 20 [+] picture button
Dscaml1_predicted ENSRNOT00000032753 NOT ANNOTATED
17.2161 -22.99 0.000135515 700 14 1 17 [+] picture button
Cldn12_predicted ENSRNOT00000009340 CG10628-PA [Source:RefSeq_peptide;Acc:NP_609999]CG10628-PA [Source:RefSeq_peptide;Acc:NP_609999] BY ORTHOLOGY TO:CG10628-RA
16.7909 -19.6 0.000135843 450 19 1 45 [+] picture button
Sult1a1 ENSRNOT00000026186 Sulfotransferase 1A1 (EC 2.8.2.1) (Aryl sulfotransferase) (Phenol sulfotransferase) (PST-1) (Sulfokinase) (Aryl sulfotransferase IV) (ASTIV) (Tyrosine-ester sulfotransferase) (Minoxidil sulfotransferase) (Mx-ST). [Source:Uniprot/SWISSPROT;Acc:P17988]
15.4636 -15.23 0.000142592 274 9 3 22 [+] picture button
LOC679570 ENSRNOT00000043523 NOT ANNOTATED
15.6084 -14.2 0.000145739 700 12 1 11 [+] picture button
Tox_predicted ENSRNOT00000014661 Thymus high mobility group box protein TOX. [Source:Uniprot/SWISSPROT;Acc:O94900]Thymus high mobility group box protein TOX. [Source:Uniprot/SWISSPROT;Acc:O94900] BY ORTHOLOGY TO:ENST00000361421
14.3423 -19.75 0.00015426 700 17 9 34 [+] picture button
RGD1306410 ENSRNOT00000001365 Similar to CG14980-PB. [Source:Uniprot/SPTREMBL;Acc:Q6AYE1]
14.6677 -18.19 0.000221719 278 14 8 44 [+] picture button
Tspan1 ENSRNOT00000018766 tetraspanin 1 [Source:RefSeq_peptide;Acc:NP_001004236]
16.2816 -23.28 0.000233042 379 18 6 56 [+] picture button
Dnpep ENSRNOT00000026799 aspartyl aminopeptidase [Source:RefSeq_peptide;Acc:NP_001020050]
17.631 -19.28 0.000275983 700 21 4 23 [+] picture button
Chaf1b ENSRNOT00000002299 chromatin assembly factor 1, subunit B (p60) [Source:RefSeq_peptide;Acc:NP_001019912]
15.0088 -14.4 0.000301698 108 7 3 21 [+] picture button
Sec23ip ENSRNOT00000027665 Sec23ip protein. [Source:Uniprot/SPTREMBL;Acc:Q4KM40]
16.1273 -18.49 0.000322251 365 17 6 41 [+] picture button
Ephx2 ENSRNOT00000023385 Epoxide hydrolase 2 (EC 3.3.2.10) (Soluble epoxide hydrolase) (SEH) (Epoxide hydratase) (Cytosolic epoxide hydrolase) (CEH). [Source:Uniprot/SWISSPROT;Acc:P80299]
16.179 -18.71 0.000324932 700 17 3 25 [+] picture button
Kbtbd3_predicted ENSRNOT00000034503 Kelch repeat and BTB domain-containing protein 3 (BTB and kelch domain-containing protein 3). [Source:Uniprot/SWISSPROT;Acc:Q8NAB2]Kelch repeat and BTB domain-containing protein 3 (BTB and kelch domain-containing protein 3). [Source:Uniprot/SWISSPROT;Acc:Q8NAB2] BY ORTHOLOGY TO:ENST00000332166
14.8507 -16.99 0.000329811 700 12 2 12 [+] picture button
XR_006886.1 ENSRNOT00000028551 similar to testes-specific heterogenous nuclear ribonucleoprotein G-T (LOC365344), mRNA [Source:RefSeq_dna;Acc:XR_006886]
15.4452 -19.65 0.000362137 700 13 3 20 [+] picture button
LOC687964 ENSRNOT00000056712 gene model 1679, (NCBI) [Source:MarkerSymbol;Acc:MGI:2686525]gene model 1679, (NCBI) [Source:MarkerSymbol;Acc:MGI:2686525] BY ORTHOLOGY TO:ENSMUST00000100924
15.6348 -27.2 0.000411287 700 16 3 24 [+] picture button
Psarl ENSRNOT00000030837 Presenilins-associated rhomboid-like protein, mitochondrial precursor (EC 3.4.21.105) (Mitochondrial intramembrane-cleaving protease PARL) [Contains: P-beta (Pbeta)]. [Source:Uniprot/SWISSPROT;Acc:Q3B8P0]
16.487 -17.35 0.000440439 151 7 6 24 [+] picture button
RGD1566260_predicted ENSRNOT00000032862 NOT ANNOTATED
15.9405 -15.45 0.00044345 336 14 1 29 [+] picture button
LOC500270 ENSRNOT00000050772 796 (LOC500270), mRNA [Source:RefSeq_dna;Acc:NM_001047956]
15.5904 -25.12 0.000447704 700 12 1 15 [+] picture button
Sct ENSRNOT00000054871 Secretin precursor. [Source:Uniprot/SWISSPROT;Acc:P11384]
14.727 -17.81 0.00049453 700 12 2 17 [+] picture button
RGD1307009 ENSRNOT00000022703 retinoid x receptor interacting protein [Source:RefSeq_peptide;Acc:NP_001013906]
15.8047 -12.73 0.000501868 247 15 6 50 [+] picture button
Dus2l_predicted ENSRNOT00000026827 dihydrouridine synthase 2-like (SMM1, S. cerevisiae) [Source:MarkerSymbol;Acc:MGI:1913619]dihydrouridine synthase 2-like (SMM1, S. cerevisiae) [Source:MarkerSymbol;Acc:MGI:1913619] BY ORTHOLOGY TO:ENSMUST00000034375
15.4803 -18.43 0.000552159 317 17 7 65 [+] picture button

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Download table: GFF TXT
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