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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Rattus norvegicus and rno-miR-29b-2*

891 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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RGD1305045_predicted ENSRNOT00000008364 actin binding protein, putativeactin binding protein, putative BY ORTHOLOGY TO:AAEL011972-RA
18.5196 -17.06 1e-06 302 16 7 46 [+] picture button
OTTMUSG00000007209 ENSRNOT00000060585 predicted gene, OTTMUSG00000007209 [Source:MarkerSymbol;Acc:MGI:3651567]
16.5783 -16.37 1e-06 700 15 1 19 [+] picture button
RGD1562557_predicted ENSRNOT00000051685 CDNA FLJ11132 fis, clone PLACE1006335. [Source:Uniprot/SPTREMBL;Acc:Q9NUU3]CDNA FLJ11132 fis, clone PLACE1006335. [Source:Uniprot/SPTREMBL;Acc:Q9NUU3] BY ORTHOLOGY TO:ENSMMUT00000014685
16.3733 -13.64 5.19251e-06 279 15 4 53 [+] picture button
LOC499240 ENSRNOT00000018350 similar to predicted gene ICRFP703B1614Q5.5 (LOC499240), mRNA [Source:RefSeq_dna;Acc:NM_001024287]
18.1495 -24.07 1.33923e-05 700 16 2 21 [+] picture button
ENSRNOT00000038556 pleckstrin homology domain containing, family N member 1 [Source:RefSeq_peptide;Acc:NP_115505]pleckstrin homology domain containing, family N member 1 [Source:RefSeq_peptide;Acc:NP_115505] BY ORTHOLOGY TO:ENSMODT00000028707
17.7347 -26.04 1.78035e-05 700 21 2 25 [+] picture button
ENSRNOT00000044406 NOT ANNOTATED
17.1124 -19.09 1.96931e-05 700 10 1 12 [+] picture button
Wac ENSRNOT00000025272 WW domain containing adaptor with coiled-coil [Source:MarkerSymbol;Acc:MGI:2387357]
16.9163 -16.24 2.01956e-05 312 15 1 31 [+] picture button
Ucp1 ENSRNOT00000004900 Mitochondrial brown fat uncoupling protein 1 (UCP 1) (Thermogenin). [Source:Uniprot/SWISSPROT;Acc:P04633]
16.9418 -21.75 2.69142e-05 93 4 2 8 [+] picture button
RGD1562220_predicted ENSRNOT00000060923 NOT ANNOTATED
16.5939 -21.15 2.69339e-05 700 12 1 14 [+] picture button
Emb ENSRNOT00000015306 Embigin precursor. [Source:Uniprot/SWISSPROT;Acc:O88775]
16.0743 -16.59 3.22301e-05 376 19 5 51 [+] picture button
RGD1308138_predicted ENSRNOT00000060577 zona pellucida-like domain containing 1 [Source:RefSeq_peptide;Acc:NP_778226]zona pellucida-like domain containing 1 [Source:RefSeq_peptide;Acc:NP_778226] BY ORTHOLOGY TO:ENSXETT00000015257
17.8384 -17.96 4.24954e-05 700 15 1 19 [+] picture button
LOC367042 ENSRNOT00000060753 similar to Activator 1 37 kDa subunit (Replication factor C 37 kDa subunit) (A1 37 kDa subunit) (RF-C 37 kDa subunit) (RFC37) (LOC367042), mRNA [Source:RefSeq_dna;Acc:XR_007047]
16.8013 -15.44 5.01571e-05 700 11 1 10 [+] picture button
Q8CIE4_MOUSE ENSRNOT00000006376 Plec1 protein. [Source:Uniprot/SPTREMBL;Acc:Q8CIE4]
19.3295 -14.56 5.12836e-05 284 13 4 39 [+] picture button
Ddx46 ENSRNOT00000029885 Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-) (DEAD box protein 46) (Helicase of 117.4 kDa). [Source:Uniprot/SWISSPROT;Acc:Q62780]
16.7144 -17.08 5.39812e-05 287 14 5 59 [+] picture button
Ddx46 ENSRNOT00000050163 Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-) (DEAD box protein 46) (Helicase of 117.4 kDa). [Source:Uniprot/SWISSPROT;Acc:Q62780]
16.7144 -17.08 5.39812e-05 280 15 1 43 [+] picture button
RGD1359380 ENSRNOT00000004023 Uncharacterized protein C3orf1 homolog. [Source:Uniprot/SWISSPROT;Acc:Q6AY94]
16.3592 -14.71 5.43917e-05 386 18 5 47 [+] picture button
Pitrm1_predicted ENSRNOT00000022356 Presequence protease, mitochondrial precursor (EC 3.4.24.-) (Pitrilysin metalloproteinase 1). [Source:Uniprot/SWISSPROT;Acc:Q7ZVZ6]Presequence protease, mitochondrial precursor (EC 3.4.24.-) (Pitrilysin metalloproteinase 1). [Source:Uniprot/SWISSPROT;Acc:Q7ZVZ6] BY ORTHOLOGY TO:ENSDART00000056294
17.072 -19.58 6.17836e-05 700 17 4 22 [+] picture button
Satb1 ENSRNOT00000017556 special AT-rich sequence binding protein 1 [Source:RefSeq_peptide;Acc:NP_001012129]
16.3197 -20.96 6.40168e-05 494 12 6 18 [+] picture button
Papola_predicted ENSRNOT00000006982 Poly(A) polymerase alpha (EC 2.7.7.19) (PAP) (Polynucleotide adenylyltransferase alpha). [Source:Uniprot/SWISSPROT;Acc:P51003]Poly(A) polymerase alpha (EC 2.7.7.19) (PAP) (Polynucleotide adenylyltransferase alpha). [Source:Uniprot/SWISSPROT;Acc:P51003] BY ORTHOLOGY TO:ENST00000216277
16.6468 -23.84 6.41555e-05 700 19 6 42 [+] picture button
LOC688362 ENSRNOT00000042460 similar to par-1 CG8201-PO, isoform O (LOC688362), mRNA [Source:RefSeq_dna;Acc:XR_009515]
16.5939 -21.23 9.58097e-05 700 15 1 13 [+] picture button
Epb4.1l3 ENSRNOT00000022878 erythrocyte protein band 4.1-like 3 [Source:RefSeq_peptide;Acc:NP_446379]
17.7377 -23.14 9.92254e-05 233 11 1 14 [+] picture button
Net1 ENSRNOT00000046789 neuroepithelial cell transforming gene 1 [Source:RefSeq_peptide;Acc:NP_001034112]
16.5488 -18.33 0.000100107 1440 10 3 10 [+] picture button
Prlpm ENSRNOT00000022093 Placental prolactin-like protein M precursor (PRL-like protein M) (PLP-M). [Source:Uniprot/SWISSPROT;Acc:Q9JII3]
16.1459 -15.1 0.000102245 285 14 1 28 [+] picture button
Vgll1 ENSRNOT00000056667 vestigial like 1 homolog (Drosophila) [Source:MarkerSymbol;Acc:MGI:2655768]
16.446 -22.58 0.000109863 368 14 1 31 [+] picture button
RGD1559502_predicted ENSRNOT00000030462 NOT ANNOTATED
16.1162 -11.51 0.000111558 700 11 1 12 [+] picture button
Prdx1 ENSRNOT00000023132 Peroxiredoxin-1 (EC 1.11.1.15) (Thioredoxin peroxidase 2) (Thioredoxin-dependent peroxide reductase 2) (Heme-binding 23 kDa protein) (HBP23). [Source:Uniprot/SWISSPROT;Acc:Q63716]
16.487 -15.36 0.000114595 235 11 1 29 [+] picture button
ENSRNOT00000057555 NOT ANNOTATED
17.8427 -20.55 0.000114897 700 15 1 33 [+] picture button
LOC685472 ENSRNOT00000026825 leucine rich repeat transmembrane neuronal 2 [Source:MarkerSymbol;Acc:MGI:2389174]leucine rich repeat transmembrane neuronal 2 [Source:MarkerSymbol;Acc:MGI:2389174] BY ORTHOLOGY TO:ENSMUST00000091636
18.4697 -25.69 0.000120491 700 13 8 23 [+] picture button
Tbcd_predicted ENSRNOT00000054913 F16D3.4 encodes an ortholog of human TUBULIN-SPECIFIC CHAPERONE D (TBCD. OMIM:604649), also known as tubulin-folding cofactor D. F16D3.4 may be a ligand and effector of the ARL2 ortholog EVL-20. [Source: WormBase]F16D3.4 encodes an ortholog of human TUBULIN-SPECIFIC CHAPERONE D (TBCD. OMIM:604649), also known as tubulin-folding cofactor D. F16D3.4 may be a ligand and effector of the ARL2 ortholog EVL-20. [Source: WormBase] BY ORTHOLOGY TO:F16D3.4
16.905 -19.84 0.000125727 700 18 2 24 [+] picture button
ENSRNOT00000042502 NOT ANNOTATED
16.4901 -14.21 0.000126148 700 6 1 5 [+] picture button
RGD1563020_predicted ENSRNOT00000016940 CDNA FLJ41841 fis, clone NT2RI3002842. [Source:Uniprot/SPTREMBL;Acc:Q6ZW05]CDNA FLJ41841 fis, clone NT2RI3002842. [Source:Uniprot/SPTREMBL;Acc:Q6ZW05] BY ORTHOLOGY TO:ENSMMUT00000009161
16.5939 -16.89 0.000126148 700 18 2 20 [+] picture button
ENSRNOT00000041047 NOT ANNOTATED
16.4901 -14.21 0.000126148 700 5 1 4 [+] picture button
RGD1560284_predicted ENSRNOT00000010909 sperm acrosome associated 1 [Source:MarkerSymbol;Acc:MGI:1914902]sperm acrosome associated 1 [Source:MarkerSymbol;Acc:MGI:1914902] BY ORTHOLOGY TO:ENSMUST00000029927
17.0555 -16.62 0.000134106 79 3 3 5 [+] picture button
Sult1a1 ENSRNOT00000026186 Sulfotransferase 1A1 (EC 2.8.2.1) (Aryl sulfotransferase) (Phenol sulfotransferase) (PST-1) (Sulfokinase) (Aryl sulfotransferase IV) (ASTIV) (Tyrosine-ester sulfotransferase) (Minoxidil sulfotransferase) (Mx-ST). [Source:Uniprot/SWISSPROT;Acc:P17988]
16.0322 -15.29 0.000142592 274 9 3 22 [+] picture button
LOC679570 ENSRNOT00000043523 NOT ANNOTATED
16.7531 -17.89 0.000145739 700 12 1 11 [+] picture button
Gyk ENSRNOT00000051249 Glycerol kinase (EC 2.7.1.30) (ATP:glycerol 3-phosphotransferase) (Glycerokinase) (GK) (ATP-stimulated glucocorticoid-receptor translocation promoter) (ASTP). [Source:Uniprot/SWISSPROT;Acc:Q63060]
16.4901 -17.33 0.00015398 700 12 1 17 [+] picture button
Tox_predicted ENSRNOT00000014661 Thymus high mobility group box protein TOX. [Source:Uniprot/SWISSPROT;Acc:O94900]Thymus high mobility group box protein TOX. [Source:Uniprot/SWISSPROT;Acc:O94900] BY ORTHOLOGY TO:ENST00000361421
16.1091 -13.11 0.00015426 700 17 9 34 [+] picture button
Phf7 ENSRNOT00000044991 PHD finger protein 7. [Source:Uniprot/SWISSPROT;Acc:Q6AXW4]
18.0788 -15.19 0.00017968 252 12 5 54 [+] picture button
RGD1306410 ENSRNOT00000001365 Similar to CG14980-PB. [Source:Uniprot/SPTREMBL;Acc:Q6AYE1]
16.0322 -15.49 0.000221719 278 14 8 44 [+] picture button
Tspan1 ENSRNOT00000018766 tetraspanin 1 [Source:RefSeq_peptide;Acc:NP_001004236]
17.5 -24.66 0.000233042 379 18 6 56 [+] picture button
Cog4_predicted ENSRNOT00000023927 Conserved oligomeric Golgi complex component 4. [Source:Uniprot/SWISSPROT;Acc:Q9H9E3]Conserved oligomeric Golgi complex component 4. [Source:Uniprot/SWISSPROT;Acc:Q9H9E3] BY ORTHOLOGY TO:ENSMMUT00000019652
17.1336 -22.1 0.000316582 364 20 5 55 [+] picture button
LMO7 ENSRNOT00000032917 LIM domain only protein 7 [Source:RefSeq_peptide;Acc:NP_001001515]
17.2986 -22.17 0.000352376 700 20 3 32 [+] picture button
LOC687964 ENSRNOT00000056712 gene model 1679, (NCBI) [Source:MarkerSymbol;Acc:MGI:2686525]gene model 1679, (NCBI) [Source:MarkerSymbol;Acc:MGI:2686525] BY ORTHOLOGY TO:ENSMUST00000100924
17.325 -17.18 0.000411287 700 16 3 24 [+] picture button
Zfp768 ENSRNOT00000024639 zinc finger protein 768 [Source:MarkerSymbol;Acc:MGI:2384582]
19.3941 -32.48 0.000412138 700 16 5 21 [+] picture button
Mfi2_predicted ENSRNOT00000002373 Melanotransferrin precursor (Melanoma-associated antigen p97) (CD228 antigen). [Source:Uniprot/SWISSPROT;Acc:P08582]Melanotransferrin precursor (Melanoma-associated antigen p97) (CD228 antigen). [Source:Uniprot/SWISSPROT;Acc:P08582] BY ORTHOLOGY TO:SINFRUT00000128773
17.8514 -18.38 0.000444884 280 15 4 40 [+] picture button
ENSRNOT00000052135 NOT ANNOTATED
17.1124 -15.63 0.000515531 700 6 1 9 [+] picture button
BC049702 ENSRNOT00000046458 cDNA sequence BC049702 [Source:MarkerSymbol;Acc:MGI:3037654]
17.7537 -29.42 0.000526066 700 11 1 13 [+] picture button
Lins2_predicted ENSRNOT00000018463 lines homolog 1 [Source:RefSeq_peptide;Acc:NP_001035705]lines homolog 1 [Source:RefSeq_peptide;Acc:NP_001035705] BY ORTHOLOGY TO:ENSGALT00000011519
16.4109 -23.91 0.00054357 700 14 1 16 [+] picture button
Dus2l_predicted ENSRNOT00000026827 dihydrouridine synthase 2-like (SMM1, S. cerevisiae) [Source:MarkerSymbol;Acc:MGI:1913619]dihydrouridine synthase 2-like (SMM1, S. cerevisiae) [Source:MarkerSymbol;Acc:MGI:1913619] BY ORTHOLOGY TO:ENSMUST00000034375
17.1752 -23.45 0.000552159 317 17 7 65 [+] picture button
FAKD3_RAT ENSRNOT00000034410 FAST kinase domain-containing protein 3. [Source:Uniprot/SWISSPROT;Acc:Q68FN9]
17.0555 -18.37 0.000578919 214 11 6 37 [+] picture button

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Download table: GFF TXT
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