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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Rattus norvegicus and rno-miR-29a*

835 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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RGD1310670_predicted ENSRNOT00000011109 IQ motif-containing protein H (Testis development protein NYD-SP5). [Source:Uniprot/SWISSPROT;Acc:Q86VS3]IQ motif-containing protein H (Testis development protein NYD-SP5). [Source:Uniprot/SWISSPROT;Acc:Q86VS3] BY ORTHOLOGY TO:ENSMODT00000012177
17.4235 -15.71 9.12518e-08 700 14 6 17 [+] picture button
Itgb6 ENSRNOT00000011030 Integrin beta-6 precursor. [Source:Uniprot/SWISSPROT;Acc:Q6AYF4]
16.852 -17.03 1e-06 385 14 7 30 [+] picture button
LOC690919 ENSRNOT00000020332 neuregulin 4 [Source:MarkerSymbol;Acc:MGI:1933833]neuregulin 4 [Source:MarkerSymbol;Acc:MGI:1933833] BY ORTHOLOGY TO:ENSMUST00000080140
17.297 -17.54 1e-06 700 15 2 25 [+] picture button
LOC499240 ENSRNOT00000018350 similar to predicted gene ICRFP703B1614Q5.5 (LOC499240), mRNA [Source:RefSeq_dna;Acc:NM_001024287]
17.1124 -23.02 1.33923e-05 700 16 2 21 [+] picture button
ENSRNOT00000038556 pleckstrin homology domain containing, family N member 1 [Source:RefSeq_peptide;Acc:NP_115505]pleckstrin homology domain containing, family N member 1 [Source:RefSeq_peptide;Acc:NP_115505] BY ORTHOLOGY TO:ENSMODT00000028707
17.0087 -19.89 1.78035e-05 700 21 2 25 [+] picture button
Pdzd11_predicted ENSRNOT00000003872 MGC89018 protein. [Source:Uniprot/SPTREMBL;Acc:Q6DJ50]MGC89018 protein. [Source:Uniprot/SPTREMBL;Acc:Q6DJ50] BY ORTHOLOGY TO:ENSXETT00000021212
17.3465 -19.71 2.47953e-05 517 14 3 20 [+] picture button
Ucp1 ENSRNOT00000004900 Mitochondrial brown fat uncoupling protein 1 (UCP 1) (Thermogenin). [Source:Uniprot/SWISSPROT;Acc:P04633]
19.4433 -17.48 2.69142e-05 93 4 2 8 [+] picture button
RGD1562220_predicted ENSRNOT00000060923 NOT ANNOTATED
17.4235 -20.17 2.69339e-05 700 12 1 14 [+] picture button
Emb ENSRNOT00000015306 Embigin precursor. [Source:Uniprot/SWISSPROT;Acc:O88775]
18.7348 -19.79 3.22301e-05 376 19 5 51 [+] picture button
Pkd1l2 ENSRNOT00000049533 polycystic kidney disease 1 like 2 [Source:MarkerSymbol;Acc:MGI:2664668]
17.3343 -19.02 3.4329e-05 700 14 1 28 [+] picture button
Irs3 ENSRNOT00000001874 insulin receptor substrate 3 [Source:RefSeq_peptide;Acc:NP_114463]
17.5103 -15.43 3.70229e-05 296 13 2 30 [+] picture button
Hars2_predicted ENSRNOT00000012510 Probable D-tyrosyl-tRNA(Tyr) deacylase 1 (EC 3.1.-.-). [Source:Uniprot/SWISSPROT;Acc:Q2T9V8]Probable D-tyrosyl-tRNA(Tyr) deacylase 1 (EC 3.1.-.-). [Source:Uniprot/SWISSPROT;Acc:Q2T9V8] BY ORTHOLOGY TO:ENSBTAT00000011800
19.2158 -16.15 4.70423e-05 170 6 4 13 [+] picture button
Ddx46 ENSRNOT00000029885 Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-) (DEAD box protein 46) (Helicase of 117.4 kDa). [Source:Uniprot/SWISSPROT;Acc:Q62780]
16.6007 -12.95 5.39812e-05 287 14 5 59 [+] picture button
Ddx46 ENSRNOT00000050163 Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-) (DEAD box protein 46) (Helicase of 117.4 kDa). [Source:Uniprot/SWISSPROT;Acc:Q62780]
16.6007 -12.95 5.39812e-05 280 15 1 43 [+] picture button
RGD1359380 ENSRNOT00000004023 Uncharacterized protein C3orf1 homolog. [Source:Uniprot/SWISSPROT;Acc:Q6AY94]
17.354 -21.61 5.43917e-05 386 18 5 47 [+] picture button
Pitrm1_predicted ENSRNOT00000022356 Presequence protease, mitochondrial precursor (EC 3.4.24.-) (Pitrilysin metalloproteinase 1). [Source:Uniprot/SWISSPROT;Acc:Q7ZVZ6]Presequence protease, mitochondrial precursor (EC 3.4.24.-) (Pitrilysin metalloproteinase 1). [Source:Uniprot/SWISSPROT;Acc:Q7ZVZ6] BY ORTHOLOGY TO:ENSDART00000056294
17.072 -21.94 6.17836e-05 700 17 4 22 [+] picture button
Satb1 ENSRNOT00000017556 special AT-rich sequence binding protein 1 [Source:RefSeq_peptide;Acc:NP_001012129]
17.5164 -19.87 6.40168e-05 494 12 6 18 [+] picture button
Papola_predicted ENSRNOT00000006982 Poly(A) polymerase alpha (EC 2.7.7.19) (PAP) (Polynucleotide adenylyltransferase alpha). [Source:Uniprot/SWISSPROT;Acc:P51003]Poly(A) polymerase alpha (EC 2.7.7.19) (PAP) (Polynucleotide adenylyltransferase alpha). [Source:Uniprot/SWISSPROT;Acc:P51003] BY ORTHOLOGY TO:ENST00000216277
16.5415 -21.74 6.41555e-05 700 19 6 42 [+] picture button
Nin_predicted ENSRNOT00000007529 Ninein (hNinein) (Glycogen synthase kinase 3 beta-interacting protein) (GSK3B-interacting protein). [Source:Uniprot/SWISSPROT;Acc:Q8N4C6]Ninein (hNinein) (Glycogen synthase kinase 3 beta-interacting protein) (GSK3B-interacting protein). [Source:Uniprot/SWISSPROT;Acc:Q8N4C6] BY ORTHOLOGY TO:ENSXETT00000035937
17.2161 -12.79 6.89713e-05 700 20 2 32 [+] picture button
LOC364172 ENSRNOT00000017180 similar to eukaryotic translation elongation factor 1 alpha 2 (LOC364172), mRNA [Source:RefSeq_dna;Acc:XR_006078]
16.487 -9.84 8.38502e-05 310 11 2 24 [+] picture button
Eef1a1 ENSRNOT00000013608 Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1 A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu). [Source:Uniprot/SWISSPROT;Acc:P62630]
16.487 -9.84 8.38502e-05 281 11 3 25 [+] picture button
ENSRNOT00000059835 NOT ANNOTATED
16.8151 -15.14 9.11356e-05 700 11 1 18 [+] picture button
ENSRNOT00000045177 NOT ANNOTATED
17.1124 -16.49 9.21803e-05 700 9 1 8 [+] picture button
ENSRNOT00000042280 NOT ANNOTATED
17.1124 -16.49 9.21803e-05 700 10 1 9 [+] picture button
Q3UW31-2 ENSRNOT00000060448 CK038_MOUSE Isoform 2 of Q3UW31 - Mus musculus (Mouse) [Source:Uniprot/Varsplic;Acc:Q3UW31-2]
16.6976 -19.32 9.24163e-05 700 12 1 16 [+] picture button
Q3UW31-2 ENSRNOT00000051123 CK038_MOUSE Isoform 2 of Q3UW31 - Mus musculus (Mouse) [Source:Uniprot/Varsplic;Acc:Q3UW31-2]
16.6976 -19.32 9.24163e-05 700 12 1 11 [+] picture button
LOC688362 ENSRNOT00000042460 similar to par-1 CG8201-PO, isoform O (LOC688362), mRNA [Source:RefSeq_dna;Acc:XR_009515]
16.3864 -16.11 9.58097e-05 700 15 1 13 [+] picture button
Epb4.1l3 ENSRNOT00000022878 erythrocyte protein band 4.1-like 3 [Source:RefSeq_peptide;Acc:NP_446379]
16.3733 -10.24 9.92254e-05 233 11 1 14 [+] picture button
Vgll1 ENSRNOT00000056667 vestigial like 1 homolog (Drosophila) [Source:MarkerSymbol;Acc:MGI:2655768]
16.3349 -11.39 0.000109863 368 14 1 31 [+] picture button
RGD1559502_predicted ENSRNOT00000030462 NOT ANNOTATED
17.058 -18.27 0.000111558 700 11 1 12 [+] picture button
Tpbpa ENSRNOT00000061427 trophoblast specific protein alpha [Source:RefSeq_peptide;Acc:NP_742070]
16.8213 -17.91 0.00011381 700 11 1 11 [+] picture button
Prdx1 ENSRNOT00000023132 Peroxiredoxin-1 (EC 1.11.1.15) (Thioredoxin peroxidase 2) (Thioredoxin-dependent peroxide reductase 2) (Heme-binding 23 kDa protein) (HBP23). [Source:Uniprot/SWISSPROT;Acc:Q63716]
17.0555 -23.74 0.000114595 235 11 1 29 [+] picture button
ENSRNOT00000057555 NOT ANNOTATED
18.951 -19.64 0.000114897 700 15 1 33 [+] picture button
ENSRNOT00000042502 NOT ANNOTATED
16.2827 -12.15 0.000126148 700 6 1 5 [+] picture button
RGD1563020_predicted ENSRNOT00000016940 CDNA FLJ41841 fis, clone NT2RI3002842. [Source:Uniprot/SPTREMBL;Acc:Q6ZW05]CDNA FLJ41841 fis, clone NT2RI3002842. [Source:Uniprot/SPTREMBL;Acc:Q6ZW05] BY ORTHOLOGY TO:ENSMMUT00000009161
16.2827 -16.77 0.000126148 700 18 2 20 [+] picture button
ENSRNOT00000041047 NOT ANNOTATED
16.2827 -12.15 0.000126148 700 5 1 4 [+] picture button
RGD1560284_predicted ENSRNOT00000010909 sperm acrosome associated 1 [Source:MarkerSymbol;Acc:MGI:1914902]sperm acrosome associated 1 [Source:MarkerSymbol;Acc:MGI:1914902] BY ORTHOLOGY TO:ENSMUST00000029927
16.2596 -14.83 0.000134106 79 3 3 5 [+] picture button
Dscaml1_predicted ENSRNOT00000032753 NOT ANNOTATED
18.1495 -15.52 0.000135515 700 14 1 17 [+] picture button
Sult1a1 ENSRNOT00000026186 Sulfotransferase 1A1 (EC 2.8.2.1) (Aryl sulfotransferase) (Phenol sulfotransferase) (PST-1) (Sulfokinase) (Aryl sulfotransferase IV) (ASTIV) (Tyrosine-ester sulfotransferase) (Minoxidil sulfotransferase) (Mx-ST). [Source:Uniprot/SWISSPROT;Acc:P17988]
16.2596 -15.86 0.000142592 274 9 3 22 [+] picture button
Epn1 ENSRNOT00000021286 Epsin-1 (EPS-15-interacting protein 1). [Source:Uniprot/SWISSPROT;Acc:O88339]
17.1692 -20.91 0.00024576 98 5 6 17 [+] picture button
Sec23ip ENSRNOT00000027665 Sec23ip protein. [Source:Uniprot/SPTREMBL;Acc:Q4KM40]
17.6845 -12.75 0.000322251 365 17 6 41 [+] picture button
Kbtbd3_predicted ENSRNOT00000034503 Kelch repeat and BTB domain-containing protein 3 (BTB and kelch domain-containing protein 3). [Source:Uniprot/SWISSPROT;Acc:Q8NAB2]Kelch repeat and BTB domain-containing protein 3 (BTB and kelch domain-containing protein 3). [Source:Uniprot/SWISSPROT;Acc:Q8NAB2] BY ORTHOLOGY TO:ENST00000332166
16.4085 -13.19 0.000329811 700 12 2 12 [+] picture button
Pou1f1 ENSRNOT00000044300 Pituitary-specific positive transcription factor 1 (Pit-1) (Growth hormone factor 1) (GHF-1). [Source:Uniprot/SWISSPROT;Acc:P10037]
18.4618 -17.71 0.000389133 407 11 1 13 [+] picture button
Slfn8 ENSRNOT00000055962 schlafen 8 [Source:RefSeq_peptide;Acc:NP_001013992]
18.1495 -18.79 0.000407904 700 13 1 14 [+] picture button
Otc ENSRNOT00000004686 Ornithine carbamoyltransferase, mitochondrial precursor (EC 2.1.3.3) (OTCase) (Ornithine transcarbamylase). [Source:Uniprot/SWISSPROT;Acc:P00481]
19.1029 -18.39 0.000412541 355 15 3 41 [+] picture button
Pole4_predicted ENSRNOT00000008005 DNA polymerase epsilon subunit 4 (EC 2.7.7.7) (DNA polymerase II subunit 4) (DNA polymerase epsilon subunit p12). [Source:Uniprot/SWISSPROT;Acc:Q9NR33]DNA polymerase epsilon subunit 4 (EC 2.7.7.7) (DNA polymerase II subunit 4) (DNA polymerase epsilon subunit p12). [Source:Uniprot/SWISSPROT;Acc:Q9NR33] BY ORTHOLOGY TO:ENSMMUT00000002599
16.4741 -17.6 0.000429277 700 14 5 24 [+] picture button
RGD1566260_predicted ENSRNOT00000032862 NOT ANNOTATED
17.512 -11.35 0.00044345 336 14 1 29 [+] picture button
Mfi2_predicted ENSRNOT00000002373 Melanotransferrin precursor (Melanoma-associated antigen p97) (CD228 antigen). [Source:Uniprot/SWISSPROT;Acc:P08582]Melanotransferrin precursor (Melanoma-associated antigen p97) (CD228 antigen). [Source:Uniprot/SWISSPROT;Acc:P08582] BY ORTHOLOGY TO:SINFRUT00000128773
17.5103 -17.44 0.000444884 280 15 4 40 [+] picture button
LOC500270 ENSRNOT00000050772 796 (LOC500270), mRNA [Source:RefSeq_dna;Acc:NM_001047956]
18.4155 -24.09 0.000447704 700 12 1 15 [+] picture button
Ptprh ENSRNOT00000024492 Brain-enriched membrane-associated protein tyrosine phosphatase (BEM)- 2 precursor (EC 3.1.3.48). [Source:Uniprot/SPTREMBL;Acc:Q64642]
17.1198 -21.12 0.000502978 491 17 4 28 [+] picture button

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Download table: GFF TXT
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