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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Rattus norvegicus and rno-miR-16

957 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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Ccne1 ENSRNOT00000020014 G1/S-specific cyclin-E1. [Source:Uniprot/SWISSPROT;Acc:P39949]
17.6459 -16.78 8.00024e-09 523 14 9 45 [+] picture button
RGD1309550 ENSRNOT00000009120 RGD1309550 protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q5FWY6]
17.5103 -14.45 1.40431e-08 185 9 9 31 [+] picture button
Pfkfb4 ENSRNOT00000028039 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 (6PF-2-K/Fru- 2,6-P2ASE testis-type isozyme) [Includes: 6-phosphofructo-2-kinase (EC 2.7.1.105); Fructose-2,6-bisphosphatase (EC 3.1.3.46)]. [Source:Uniprot/SWISSPROT;Acc:P25114]
18.1925 -15.1 2.20999e-08 295 16 5 49 [+] picture button
RGD1563178_predicted ENSRNOT00000004505 Ectodysplasin-A (Ectodermal dysplasia protein) (EDA protein) [Contains: Ectodysplasin-A, membrane form; Ectodysplasin-A, secreted form]. [Source:Uniprot/SWISSPROT;Acc:Q92838]Ectodysplasin-A (Ectodermal dysplasia protein) (EDA protein) [Contains: Ectodysplasin-A, membrane form; Ectodysplasin-A, secreted form]. [Source:Uniprot/SWISSPROT;Acc:Q92838] BY ORTHOLOGY TO:ENST00000289824
16.5939 -18.3 3.47022e-08 700 17 6 31 [+] picture button
Colq ENSRNOT00000026550 Acetylcholinesterase collagenic tail peptide precursor (AChE Q subunit) (Acetylcholinesterase-associated collagen). [Source:Uniprot/SWISSPROT;Acc:O35167]
17.4235 -14.27 6.15929e-08 700 14 6 28 [+] picture button
RGD1564964_predicted ENSRNOT00000036864 pleckstrin homology domain interacting protein [Source:RefSeq_peptide;Acc:NP_060404]pleckstrin homology domain interacting protein [Source:RefSeq_peptide;Acc:NP_060404] BY ORTHOLOGY TO:SINFRUT00000139274
16.4283 -12.34 2.33314e-07 700 11 9 16 [+] picture button
BC039210 ENSRNOT00000018671 cDNA sequence BC039210 [Source:MarkerSymbol;Acc:MGI:3603204]
16.8013 -22.29 4.59511e-07 700 24 9 48 [+] picture button
Slc35e1_predicted ENSRNOT00000016355 cofactor required for Sp1 transcriptional activation, subunit 7 [Source:MarkerSymbol;Acc:MGI:1917875]cofactor required for Sp1 transcriptional activation, subunit 7 [Source:MarkerSymbol;Acc:MGI:1917875] BY ORTHOLOGY TO:ENSMUST00000058534
16.5966 -16.32 7.34642e-07 700 17 9 31 [+] picture button
Wee1 ENSRNOT00000013362 Wee1-like protein kinase (EC 2.7.10.2) (Wee1A kinase). [Source:Uniprot/SWISSPROT;Acc:Q63802]
16.1307 -24.02 8.18402e-07 1120 17 8 34 [+] picture button
RGD1560367_predicted ENSRNOT00000024939 RNA binding motif protein 6 [Source:MarkerSymbol;Acc:MGI:1338037]RNA binding motif protein 6 [Source:MarkerSymbol;Acc:MGI:1338037] BY ORTHOLOGY TO:ENSMUST00000035201
18.1925 -15.62 8.23016e-07 118 9 7 35 [+] picture button
Atp2b4 ENSRNOT00000046273 Plasma membrane calcium-transporting ATPase 4 (EC 3.6.3.8) (PMCA4) (Plasma membrane calcium pump isoform 4) (Plasma membrane calcium ATPase isoform 4). [Source:Uniprot/SWISSPROT;Acc:Q64542]
16.0222 -16.93 1e-06 700 17 1 19 [+] picture button
Gpr63_predicted ENSRNOT00000010081 Probable G-protein coupled receptor 63 (PSP24-beta) (PSP24-2). [Source:Uniprot/SWISSPROT;Acc:Q9BZJ6]Probable G-protein coupled receptor 63 (PSP24-beta) (PSP24-2). [Source:Uniprot/SWISSPROT;Acc:Q9BZJ6] BY ORTHOLOGY TO:SINFRUT00000181772
16.5187 -14.53 1.18692e-06 700 20 9 50 [+] picture button
Ap2a1_predicted ENSRNOT00000020304 The apt-4 gene encodes an adaptin: specifically, it encodes an ortholog of the alpha subunit of adaptor protein complex 2 (AP-2). [Source: WormBase]The apt-4 gene encodes an adaptin: specifically, it encodes an ortholog of the alpha subunit of adaptor protein complex 2 (AP-2). [Source: WormBase] BY ORTHOLOGY TO:T20B5.1.1
18.1925 -13.74 1.57528e-06 236 15 7 69 [+] picture button
Polr3f_predicted ENSRNOT00000010468 DNA-directed RNA polymerase III subunit F (EC 2.7.7.6) (DNA-directed RNA polymerase III 39 kDa polypeptide) (RNA polymerase III C39 subunit). [Source:Uniprot/SWISSPROT;Acc:Q9H1D9]DNA-directed RNA polymerase III subunit F (EC 2.7.7.6) (DNA-directed RNA polymerase III 39 kDa polypeptide) (RNA polymerase III C39 subunit). [Source:Uniprot/SWISSPROT;Acc:Q9H1D9] BY ORTHOLOGY TO:ENSOANT00000001997
17.0144 -14.96 1.58589e-06 750 16 7 24 [+] picture button
RGD1308279_predicted ENSRNOT00000023748 Zinc finger protein 508. [Source:Uniprot/SWISSPROT;Acc:Q6IQ32]Zinc finger protein 508. [Source:Uniprot/SWISSPROT;Acc:Q6IQ32] BY ORTHOLOGY TO:ENSMODT00000015225
16.179 -14.4 2.3614e-06 700 17 4 27 [+] picture button
Nup188 ENSRNOT00000030996 Nup188 protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q5RJY5]
17.9015 -13.37 2.6893e-06 366 20 7 56 [+] picture button
Mum1_predicted ENSRNOT00000038976 melanoma ubiquitous mutated protein [Source:RefSeq_peptide;Acc:NP_116242]melanoma ubiquitous mutated protein [Source:RefSeq_peptide;Acc:NP_116242] BY ORTHOLOGY TO:ENSCAFT00000031046
16.5069 -17.83 3.80398e-06 391 20 3 61 [+] picture button
RGD1308134_predicted ENSRNOT00000025491 Uncharacterized potential DNA-binding protein C17orf49. [Source:Uniprot/SWISSPROT;Acc:Q8IXM2]Uncharacterized potential DNA-binding protein C17orf49. [Source:Uniprot/SWISSPROT;Acc:Q8IXM2] BY ORTHOLOGY TO:ENSMMUT00000022852
20.846 -32.91 4.42329e-06 700 18 5 26 [+] picture button
Acvr2a ENSRNOT00000007404 Activin receptor type-2A precursor (EC 2.7.11.30) (Activin receptor type IIA) (ACTR-IIA). [Source:Uniprot/SWISSPROT;Acc:P38444]
17.9536 -23.39 4.63364e-06 713 19 10 34 [+] picture button
Myt1l ENSRNOT00000005804 Myelin transcription factor 1-like protein (MyT1L protein) (Neural zinc finger factor 1) (NZF-1). [Source:Uniprot/SWISSPROT;Acc:P70475]
17.0652 -21.12 5.41067e-06 700 21 9 34 [+] picture button
Helz_predicted ENSRNOT00000030300 zinc finger proteinzinc finger protein BY ORTHOLOGY TO:AAEL008579-RA
16.7144 -14.17 6.0162e-06 289 15 9 65 [+] picture button
Ccnt2_predicted ENSRNOT00000022981 Cyclin-T2 (CycT2). [Source:Uniprot/SWISSPROT;Acc:O60583]Cyclin-T2 (CycT2). [Source:Uniprot/SWISSPROT;Acc:O60583] BY ORTHOLOGY TO:ENSMODT00000000892
17.1124 -22.06 6.23656e-06 700 20 9 45 [+] picture button
LOC685634 ENSRNOT00000019224 cDNA sequence BC003266 [Source:MarkerSymbol;Acc:MGI:1933141]cDNA sequence BC003266 [Source:MarkerSymbol;Acc:MGI:1933141] BY ORTHOLOGY TO:ENSMUST00000046609
15.7642 -15.84 7.31674e-06 700 19 5 34 [+] picture button
G0s2 ENSRNOT00000007879 G0/G1 switch gene 2 [Source:RefSeq_peptide;Acc:NP_001009632]
18.3062 -15.31 7.46086e-06 321 16 6 62 [+] picture button
Wipi2 ENSRNOT00000001476 WD repeat domain phosphoinositide-interacting protein 2 (WIPI-2). [Source:Uniprot/SWISSPROT;Acc:Q6AY57]
16.487 -12.34 9.4951e-06 182 11 8 34 [+] picture button
Eif2b2 ENSRNOT00000008730 Translation initiation factor eIF-2B subunit beta (eIF-2B GDP-GTP exchange factor subunit beta). [Source:Uniprot/SWISSPROT;Acc:Q62818]
15.7746 -16.33 9.7028e-06 369 20 5 75 [+] picture button
Epha1_predicted ENSRNOT00000024037 Ephrin type-A receptor 1 precursor (EC 2.7.10.1) (Tyrosine-protein kinase receptor EPH). [Source:Uniprot/SWISSPROT;Acc:P21709]Ephrin type-A receptor 1 precursor (EC 2.7.10.1) (Tyrosine-protein kinase receptor EPH). [Source:Uniprot/SWISSPROT;Acc:P21709] BY ORTHOLOGY TO:ENSMODT00000001819
16.9418 -15.12 1.12282e-05 255 9 6 37 [+] picture button
Q9WVP7_RAT ENSRNOT00000048116 Activity and neurotransmitter-induced early gene protein 4. [Source:Uniprot/SPTREMBL;Acc:Q9WVP7]
17.2497 -16.41 1.12654e-05 700 16 6 23 [+] picture button
Nf2 ENSRNOT00000046803 Merlin (Moesin-ezrin-radixin-like protein) (Neurofibromin-2) (Schwannomin) (Fragment). [Source:Uniprot/SWISSPROT;Acc:Q63648]
17.3044 -25.53 1.14378e-05 700 20 3 36 [+] picture button
Aatf ENSRNOT00000000258 Protein AATF (Apoptosis-antagonizing transcription factor). [Source:Uniprot/SWISSPROT;Acc:Q9QYW0]
17.2829 -14.75 1.35729e-05 96 3 3 13 [+] picture button
RGD1559449_predicted ENSRNOT00000014431 Pseudokinase ALS2CR2 (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 2 protein) (STRAD beta) (ILP-interacting protein) (CALS-21). [Source:Uniprot/SWISSPROT;Acc:Q9C0K7]Pseudokinase ALS2CR2 (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 2 protein) (STRAD beta) (ILP-interacting protein) (CALS-21). [Source:Uniprot/SWISSPROT;Acc:Q9C0K7] BY ORTHOLOGY TO:SINFRUT00000162209
16.179 -13.33 1.41008e-05 700 19 9 32 [+] picture button
Stub1 ENSRNOT00000026921 STIP1 homology and U-Box containing protein 1 [Source:RefSeq_peptide;Acc:NP_001020796]
16.9418 -15.77 1.45255e-05 250 13 7 43 [+] picture button
Ddx39 ENSRNOT00000045974 ATP-dependent RNA helicase DDX39 (EC 3.6.1.-) (DEAD box protein 39) (Nuclear RNA helicase, DECD variant of DEAD box family). [Source:Uniprot/SWISSPROT;Acc:Q5U216]
16.1459 -12.02 1.50814e-05 132 7 4 31 [+] picture button
Stox2 ENSRNOT00000012744 PREDICTED: Bos taurus hypothetical LOC535434 (LOC535434), mRNA. [Source:RefSeq_dna;Acc:XR_027815]PREDICTED: Bos taurus hypothetical LOC535434 (LOC535434), mRNA. [Source:RefSeq_dna;Acc:XR_027815] BY ORTHOLOGY TO:ENSBTAT00000011697
16.8409 -18.01 1.51693e-05 412 18 8 43 [+] picture button
Frmpd1_predicted ENSRNOT00000016839 FERM and PDZ domain containing 1 [Source:RefSeq_peptide;Acc:NP_055722]FERM and PDZ domain containing 1 [Source:RefSeq_peptide;Acc:NP_055722] BY ORTHOLOGY TO:ENSXETT00000004778
15.8868 -12.49 1.68399e-05 700 14 5 22 [+] picture button
RGD1304929_predicted ENSRNOT00000039518 Uncharacterized protein C13orf18. [Source:Uniprot/SWISSPROT;Acc:Q9H714]Uncharacterized protein C13orf18. [Source:Uniprot/SWISSPROT;Acc:Q9H714] BY ORTHOLOGY TO:ENSBTAT00000017794
16.5925 -14.81 1.71799e-05 700 17 4 37 [+] picture button
RGD1305179_predicted ENSRNOT00000049285 NEDD4-binding protein 1 (N4BP1) (Fragment). [Source:Uniprot/SWISSPROT;Acc:O75113]NEDD4-binding protein 1 (N4BP1) (Fragment). [Source:Uniprot/SWISSPROT;Acc:O75113] BY ORTHOLOGY TO:ENSMMUT00000026676
16.9462 -13.76 1.79e-05 417 15 7 40 [+] picture button
Wdr68_predicted ENSRNOT00000010862 WD repeat domain 68 [Source:RefSeq_peptide;Acc:NP_001033214]WD repeat domain 68 [Source:RefSeq_peptide;Acc:NP_001033214] BY ORTHOLOGY TO:ENSBTAT00000004550
16.9727 -15.3 1.84086e-05 473 19 4 36 [+] picture button
Pth ENSRNOT00000019199 Parathyroid hormone precursor (Parathyrin) (PTH). [Source:Uniprot/SWISSPROT;Acc:P04089]
17.7377 -15.73 1.84495e-05 238 12 6 32 [+] picture button
Il1rapl1 ENSRNOT00000052134 X-linked interleukin-1 receptor accessory protein-like 1 precursor (IL1RAPL-1). [Source:Uniprot/SWISSPROT;Acc:P59824]
16.4506 -16.81 1.98589e-05 700 20 7 36 [+] picture button
Lyrm5 ENSRNOT00000021284 LYR motif containing 5 [Source:MarkerSymbol;Acc:MGI:1914886]
16.0993 -20.33 1.99917e-05 700 15 4 25 [+] picture button
Zfp622 ENSRNOT00000014423 Zinc finger protein 622 (Liver regeneration-related protein LRRG121). [Source:Uniprot/SWISSPROT;Acc:Q7TM96]
16.3864 -19.5 2.05647e-05 700 15 6 25 [+] picture button
Q9JKC9-3 ENSRNOT00000055908 SYNG_RAT Isoform 3 of Q9JKC9 - Rattus norvegicus (Rat) [Source:Uniprot/Varsplic;Acc:Q9JKC9-3]
16.2827 -14.55 2.2049e-05 700 16 6 33 [+] picture button
Otud6b_predicted ENSRNOT00000008725 OTU domain-containing protein 6B. [Source:Uniprot/SWISSPROT;Acc:Q8N6M0]OTU domain-containing protein 6B. [Source:Uniprot/SWISSPROT;Acc:Q8N6M0] BY ORTHOLOGY TO:ENSOANT00000024001
15.9716 -23.25 3.16019e-05 700 11 1 15 [+] picture button
RGD1305453 ENSRNOT00000022908 similar to RIKEN cDNA 2410166I05 (RGD1305453), mRNA [Source:RefSeq_dna;Acc:NM_001013935]
15.9931 -23.06 3.71011e-05 700 17 4 24 [+] picture button
Amigo3 ENSRNOT00000026740 Amphoterin-induced protein 3 precursor (AMIGO-3) (Alivin-3). [Source:Uniprot/SWISSPROT;Acc:Q80ZD5]
15.9716 -14.75 3.79186e-05 700 19 5 30 [+] picture button
RGD1565217_predicted ENSRNOT00000013871 Uracil-DNA glycosylase 2 (EC 3.2.2.-) (UDG2) (Cyclin-like uracil-DNA glycosylase). [Source:Uniprot/SWISSPROT;Acc:P22674]Uracil-DNA glycosylase 2 (EC 3.2.2.-) (UDG2) (Cyclin-like uracil-DNA glycosylase). [Source:Uniprot/SWISSPROT;Acc:P22674] BY ORTHOLOGY TO:ENSMMUT00000014512
16.0753 -14.46 3.79357e-05 700 21 5 33 [+] picture button
Cops2 ENSRNOT00000012287 COP9 signalosome complex subunit 2 (Signalosome subunit 2) (SGN2) (JAB1-containing signalosome subunit 2) (Thyroid receptor-interacting protein 15) (TRIP-15) (Alien homolog). [Source:Uniprot/SWISSPROT;Acc:P61203]
15.9575 -16.29 3.98091e-05 585 18 10 29 [+] picture button
Chpt1 ENSRNOT00000007305 Cholinephosphotransferase 1 (EC 2.7.8.2) (Diacylglycerol cholinephosphotransferase 1). [Source:Uniprot/SWISSPROT;Acc:Q66H21]
17.9651 -19.92 4.07777e-05 188 9 6 31 [+] picture button
RGD1311970_predicted ENSRNOT00000034137 UPF0418 protein C8orf70. [Source:Uniprot/SWISSPROT;Acc:Q96GY0]UPF0418 protein C8orf70. [Source:Uniprot/SWISSPROT;Acc:Q96GY0] BY ORTHOLOGY TO:ENSMODT00000008467
16.9927 -16.03 4.42567e-05 700 16 5 24 [+] picture button

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Download table: GFF TXT
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