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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Rattus norvegicus and rno-let-7e*

950 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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Ercc8_predicted ENSRNOT00000013598 DNA excision repair protein ERCC-8 (Cockayne syndrome WD repeat protein CSA). [Source:Uniprot/SWISSPROT;Acc:Q13216]DNA excision repair protein ERCC-8 (Cockayne syndrome WD repeat protein CSA). [Source:Uniprot/SWISSPROT;Acc:Q13216] BY ORTHOLOGY TO:ENST00000265038
15.2102 -18.09 5.0924e-07 872 16 2 21 [+] picture button
Tubgcp5_predicted ENSRNOT00000015789 NOT ANNOTATED
14.5196 -13.06 1e-06 700 13 1 12 [+] picture button
ENSRNOT00000033618 NOT ANNOTATED
15.1008 -17.31 1e-06 700 12 1 17 [+] picture button
RGD1564952_predicted ENSRNOT00000005355 similar to zinc finger, RAN-binding domain containing 3 (predicted) (RGD1564952_predicted), mRNA [Source:RefSeq_dna;Acc:XR_007587]
16.179 -23.96 1e-06 700 18 5 25 [+] picture button
Renbp ENSRNOT00000056337 N-acylglucosamine 2-epimerase (EC 5.1.3.8) (GlcNAc 2-epimerase) (N- acetyl-D-glucosamine 2-epimerase) (AGE) (Renin-binding protein) (RnBP). [Source:Uniprot/SWISSPROT;Acc:P51607]
15.7642 -22.04 3.04125e-06 700 20 4 32 [+] picture button
Dnmt1 ENSRNOT00000061192 DNA (cytosine-5-)-methyltransferase 1 [Source:RefSeq_peptide;Acc:NP_445806]
14.9242 -16.08 4.06193e-06 700 19 7 36 [+] picture button
Srp19_predicted ENSRNOT00000027418 Signal recognition particle 19 kDa protein (SRP19). [Source:Uniprot/SWISSPROT;Acc:P09132]Signal recognition particle 19 kDa protein (SRP19). [Source:Uniprot/SWISSPROT;Acc:P09132] BY ORTHOLOGY TO:ENST00000379648
14.4857 -9.07 3.23489e-05 359 16 6 40 [+] picture button
Pole2_predicted ENSRNOT00000005835 DNA polymerase epsilon subunit 2 (EC 2.7.7.7) (DNA polymerase II subunit 2) (DNA polymerase epsilon subunit B). [Source:Uniprot/SWISSPROT;Acc:P56282]DNA polymerase epsilon subunit 2 (EC 2.7.7.7) (DNA polymerase II subunit 2) (DNA polymerase epsilon subunit B). [Source:Uniprot/SWISSPROT;Acc:P56282] BY ORTHOLOGY TO:ENSMMUT00000005546
14.727 -23.11 3.70788e-05 700 8 1 9 [+] picture button
Irx3_predicted ENSRNOT00000015583 Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein 3) (Homeodomain protein IRXB1). [Source:Uniprot/SWISSPROT;Acc:P78415]Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein 3) (Homeodomain protein IRXB1). [Source:Uniprot/SWISSPROT;Acc:P78415] BY ORTHOLOGY TO:ENSCAFT00000015031
14.9153 -10.89 4.01221e-05 339 15 6 38 [+] picture button
Fam3c ENSRNOT00000007886 family with sequence similarity 3, member C [Source:RefSeq_peptide;Acc:NP_942066]
15.4027 -15.9 4.06323e-05 700 18 6 29 [+] picture button
Aldh1l2 ENSRNOT00000011483 aldehyde dehydrogenase 1 family, member L2 [Source:MarkerSymbol;Acc:MGI:2444680]
15.5567 -11.72 4.61921e-05 700 14 2 18 [+] picture button
Tmod3 ENSRNOT00000013852 tropomodulin 3 [Source:RefSeq_peptide;Acc:NP_001011997]
15.3476 -18.19 5.26518e-05 474 18 4 30 [+] picture button
LOC367134 ENSRNOT00000051207 similar to 60S ribosomal protein L7a (LOC367134), mRNA [Source:RefSeq_dna;Acc:XR_008300]
15.2941 -24.12 5.35076e-05 700 13 1 17 [+] picture button
Bag3 ENSRNOT00000027616 Bcl2-associated athanogene 3 [Source:RefSeq_peptide;Acc:NP_001011936]
15.0382 -8.63 5.58183e-05 502 19 7 35 [+] picture button
Crim1_predicted ENSRNOT00000005983 Cysteine-rich motor neuron 1 protein precursor (CRIM-1). [Source:Uniprot/SWISSPROT;Acc:Q7T3Q2]Cysteine-rich motor neuron 1 protein precursor (CRIM-1). [Source:Uniprot/SWISSPROT;Acc:Q7T3Q2] BY ORTHOLOGY TO:ENSDART00000050534
15.0599 -17.98 5.75189e-05 700 23 8 36 [+] picture button
Pigf ENSRNOT00000020600 phosphatidylinositol glycan anchor biosynthesis, class F [Source:MarkerSymbol;Acc:MGI:99462]
14.8308 -16.85 6.46506e-05 700 14 9 22 [+] picture button
Gpr27 ENSRNOT00000014455 Probable G-protein coupled receptor 27 (Super conserved receptor expressed in brain 1). [Source:Uniprot/SWISSPROT;Acc:Q9JJH3]
14.6496 -17.15 6.59036e-05 700 19 5 26 [+] picture button
Abca2 ENSRNOT00000020339 ATP-binding cassette sub-family A member 2 (ATP-binding cassette transporter 2) (ATP-binding cassette 2). [Source:Uniprot/SWISSPROT;Acc:Q9ESR9]
14.8292 -16.59 6.6075e-05 655 17 4 27 [+] picture button
RGD1308329_predicted ENSRNOT00000011061 WW domain-containing protein 1 (Kidney and brain protein) (KIBRA) (HBeAg-binding protein 3). [Source:Uniprot/SWISSPROT;Acc:Q8IX03]WW domain-containing protein 1 (Kidney and brain protein) (KIBRA) (HBeAg-binding protein 3). [Source:Uniprot/SWISSPROT;Acc:Q8IX03] BY ORTHOLOGY TO:ENSGALT00000002822
15.5604 -11.76 7.05981e-05 390 16 7 44 [+] picture button
LOC683924 ENSRNOT00000011217 CDNA FLJ31166 fis, clone KIDNE1000143 (SWRP5927). [Source:Uniprot/SPTREMBL;Acc:Q96NA7]CDNA FLJ31166 fis, clone KIDNE1000143 (SWRP5927). [Source:Uniprot/SPTREMBL;Acc:Q96NA7] BY ORTHOLOGY TO:ENSGALT00000022982
14.5196 -9.07 7.57421e-05 700 12 2 18 [+] picture button
Q63274_RAT ENSRNOT00000056464 Kallikrein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q63274]
14.8308 -15.16 7.88095e-05 700 10 1 9 [+] picture button
LOC317165 ENSRNOT00000051002 similar to Set alpha isoform (LOC317165), mRNA [Source:RefSeq_dna;Acc:NM_001047892]
16.9233 -12.01 7.97274e-05 700 12 1 12 [+] picture button
Eps8_predicted ENSRNOT00000009328 eps-8 is predicted to encode five protein isoforms with similarity to mouse epidermal growth factor receptor kinase substrate that affects embryonic viability, growth, locomotion, osmoregulation, and larval viability. interacts with GEX-3 in yeast two-hybrid assays. [Source: WormBase]eps-8 is predicted to encode five protein isoforms with similarity to mouse epidermal growth factor receptor kinase substrate that affects embryonic viability, growth, locomotion, osmoregulation, and larval viability. interacts with GEX-3 in yeast two-hybrid assays. [Source: WormBase] BY ORTHOLOGY TO:Y57G11C.24g
16.9098 -18.83 8.67092e-05 700 14 2 18 [+] picture button
Cldn10_predicted ENSRNOT00000013669 NOT ANNOTATED
15.7949 -30.6 8.903e-05 700 9 1 13 [+] picture button
Olr720_predicted ENSRNOT00000008676 olfactory receptor Olr720 [Source:RefSeq_peptide;Acc:NP_001001067]
15.4194 -10.94 0.000112353 700 6 2 13 [+] picture button
Yeats4_predicted ENSRNOT00000007580 YEATS domain-containing protein 4 (Glioma-amplified sequence-41) (Gas41) (NuMA-binding protein 1) (NuBI-1) (NuBI1). [Source:Uniprot/SWISSPROT;Acc:O95619]YEATS domain-containing protein 4 (Glioma-amplified sequence-41) (Gas41) (NuMA-binding protein 1) (NuBI-1) (NuBI1). [Source:Uniprot/SWISSPROT;Acc:O95619] BY ORTHOLOGY TO:ENSMODT00000025936
14.8589 -16.26 0.000116676 484 18 3 38 [+] picture button
Cops4 ENSRNOT00000003046 COP9 signalosome complex subunit 4 (Signalosome subunit 4) (SGN4) (JAB1-containing signalosome subunit 4). [Source:Uniprot/SWISSPROT;Acc:Q68FS2]
17.0562 -23.42 0.000120027 318 16 6 71 [+] picture button
Ets2 ENSRNOT00000002247 C-ets-2 protein. [Source:Uniprot/SWISSPROT;Acc:P15036]C-ets-2 protein. [Source:Uniprot/SWISSPROT;Acc:P15036] BY ORTHOLOGY TO:ENSOANT00000010247
15.1806 -19.83 0.000121749 700 16 3 23 [+] picture button
Chrnb4 ENSRNOT00000040753 Neuronal acetylcholine receptor subunit beta-4 precursor (Neuronal acetylcholine receptor non-alpha-2 chain) (N-alpha 2). [Source:Uniprot/SWISSPROT;Acc:P12392]
15.2456 -15.11 0.000131141 700 11 2 14 [+] picture button
Epb4.1l2 ENSRNOT00000037224 erythrocyte protein band 4.1-like 2 [Source:MarkerSymbol;Acc:MGI:103009]
15.1474 -15.34 0.000135035 700 7 1 5 [+] picture button
Tagap_predicted ENSRNOT00000025580 T-cell activation Rho GTPase-activating protein (T-cell activation GTPase-activating protein). [Source:Uniprot/SWISSPROT;Acc:Q8N103]T-cell activation Rho GTPase-activating protein (T-cell activation GTPase-activating protein). [Source:Uniprot/SWISSPROT;Acc:Q8N103] BY ORTHOLOGY TO:ENSMODT00000009606
15.5567 -18.72 0.000137814 700 19 6 47 [+] picture button
Dlx5 ENSRNOT00000014946 Homeobox protein DLX-5 (DLX-3) (RDLX). [Source:Uniprot/SWISSPROT;Acc:P50575]
15.3947 -9.83 0.000144209 342 17 11 53 [+] picture button
Cntn4 ENSRNOT00000007788 Contactin-4 precursor (Brain-derived immunoglobulin superfamily protein 2) (BIG-2). [Source:Uniprot/SWISSPROT;Acc:Q62845]
15.7027 -14.26 0.000145618 700 18 6 28 [+] picture button
Kcnmb4 ENSRNOT00000030847 Calcium-activated potassium channel subunit beta 4 (Calcium-activated potassium channel, subfamily M subunit beta 4) (Maxi K channel subunit beta 4) (BK channel subunit beta 4) (Slo-beta 4) (K(VCA)beta 4) (Charybdotoxin receptor subunit beta 4) (BKbeta4). [Source:Uniprot/SWISSPROT;Acc:Q9ESK8]
14.3654 -11.17 0.000151946 361 20 6 52 [+] picture button
Zfpm2_predicted ENSRNOT00000005468 F21A9.2 [Source:RefSeq_peptide;Acc:NP_491204]F21A9.2 [Source:RefSeq_peptide;Acc:NP_491204] BY ORTHOLOGY TO:F21A9.2
15.6981 -12.63 0.000152046 700 16 14 35 [+] picture button
Zfpm2_predicted ENSRNOT00000029419 NOT ANNOTATED
15.6981 -12.63 0.000152046 700 11 1 14 [+] picture button
Wdsub1 ENSRNOT00000033947 WD repeat, SAM and U-box domain-containing protein 1. [Source:Uniprot/SWISSPROT;Acc:Q5FVN8]
14.4817 -20.06 0.000152511 700 11 1 11 [+] picture button
RGD1560762_predicted ENSRNOT00000057719 NOT ANNOTATED
15.9716 -18.83 0.000183136 700 17 1 18 [+] picture button
Hoxa5 ENSRNOT00000008523 Homeobox protein Hox-A5 (Hox-1.3) (Fragment). [Source:Uniprot/SWISSPROT;Acc:P52949]
15.0088 -8.92 0.000183676 214 12 8 41 [+] picture button
RGD1566222_predicted ENSRNOT00000021613 Coiled-coil domain-containing protein 106. [Source:Uniprot/SWISSPROT;Acc:Q9BWC9]Coiled-coil domain-containing protein 106. [Source:Uniprot/SWISSPROT;Acc:Q9BWC9] BY ORTHOLOGY TO:ENSOANT00000032381
14.6233 -22.81 0.000186716 700 19 3 25 [+] picture button
Nmd3_predicted ENSRNOT00000012417 NMD3 homolog (S. cerevisiae) [Source:MarkerSymbol;Acc:MGI:2140103]NMD3 homolog (S. cerevisiae) [Source:MarkerSymbol;Acc:MGI:2140103] BY ORTHOLOGY TO:ENSMUST00000029358
14.5791 -9.62 0.000241925 700 15 3 20 [+] picture button
Olr51_predicted ENSRNOT00000020678 olfactory receptor Olr51 [Source:RefSeq_peptide;Acc:NP_001001021]
15.0382 -9.61 0.000250841 700 14 2 17 [+] picture button
Fbxo38 ENSRNOT00000025790 F-box protein 38 [Source:MarkerSymbol;Acc:MGI:2444639]
14.7814 -12.61 0.000251568 216 10 10 23 [+] picture button
ENSRNOT00000052253 NOT ANNOTATED
14.7982 -14.68 0.000257693 700 11 2 26 [+] picture button
RT1-Bb ENSRNOT00000000525 RT1 class II histocompatibility antigen, B-1 beta chain precursor (RT1.B-beta(1)). [Source:Uniprot/SWISSPROT;Acc:P29826]
14.7605 -13.52 0.00027047 656 14 2 14 [+] picture button
LOC498065 ENSRNOT00000033486 Uncharacterized protein C21orf13. [Source:Uniprot/SWISSPROT;Acc:O95447]Uncharacterized protein C21orf13. [Source:Uniprot/SWISSPROT;Acc:O95447] BY ORTHOLOGY TO:ENSGALT00000025978
15.4785 -17.63 0.000272595 700 12 3 18 [+] picture button
Olfr225 ENSRNOT00000029494 olfactory receptor 225 [Source:MarkerSymbol;Acc:MGI:3030059]
16.2827 -26.04 0.000280673 700 18 2 23 [+] picture button
RGD1561422_predicted ENSRNOT00000009990 PREDICTED: Gallus gallus similar to Activating signal cointegrator 1 complex subunit 2 (LOC417016), mRNA. [Source:RefSeq_dna;Acc:XR_026991]PREDICTED: Gallus gallus similar to Activating signal cointegrator 1 complex subunit 2 (LOC417016), mRNA. [Source:RefSeq_dna;Acc:XR_026991] BY ORTHOLOGY TO:ENSGALT00000013083
14.4403 -17.38 0.000284045 90 3 4 12 [+] picture button
LOC499392 ENSRNOT00000009545 Uncharacterized protein C6orf167. [Source:Uniprot/SWISSPROT;Acc:Q6ZRQ5]Uncharacterized protein C6orf167. [Source:Uniprot/SWISSPROT;Acc:Q6ZRQ5] BY ORTHOLOGY TO:ENSMODT00000022994
14.7647 -18.15 0.000313568 700 13 3 20 [+] picture button
Keap1 ENSRNOT00000028360 Kelch-like ECH-associated protein 1 (Cytosolic inhibitor of Nrf2) (INrf2). [Source:Uniprot/SWISSPROT;Acc:P57790]
16.0322 -22.01 0.000321306 257 21 3 36 [+] picture button

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Download table: GFF TXT
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