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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Takifugu rubripes and fru-miR-30c

825 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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TMCC1 (2 of 2) SINFRUT00000131295 Transmembrane and coiled-coil domains protein 1. [Source:Uniprot/SWISSPROT;Acc:O94876]
16.7355 -12.95 6.25363e-09 400 5 10 6 [+] picture button
PPARGC1B SINFRUT00000130559 Peroxisome proliferator-activated receptor gamma coactivator 1-beta (PPAR gamma coactivator-1beta) (PGC-1-related estrogen receptor alpha coactivator) (PPARGC-1-beta) (PGC-1-beta). [Source:Uniprot/SWISSPROT;Acc:Q86YN6]
16.8309 -9.65 6.86984e-09 400 6 14 9 [+] picture button
FBXO42 SINFRUT00000131342 F-box only protein 42. [Source:Uniprot/SWISSPROT;Acc:Q6P3S6]
18.0328 -11.79 8.93635e-09 400 8 7 13 [+] picture button
FAM49A SINFRUT00000137949 Protein FAM49A. [Source:Uniprot/SWISSPROT;Acc:Q9H0Q0]
17.6784 -14.74 1.72474e-08 400 7 10 10 [+] picture button
UBAC1 SINFRUT00000134423 Ubiquitin-associated domain-containing protein 1 (E3 ubiquitin-protein ligase subunit KPC2) (Kip1 ubiquitination-promoting complex protein 2) (Glialblastoma cell differentiation-related protein 1). [Source:Uniprot/SWISSPROT;Acc:Q9BSL1]
16.1471 -8.23 2.85949e-08 400 5 9 8 [+] picture button
MELK SINFRUT00000149301 Maternal embryonic leucine zipper kinase (EC 2.7.11.1) (hMELK) (Protein kinase PK38) (hPK38). [Source:Uniprot/SWISSPROT;Acc:Q14680]
16.9557 -8.89 3.31796e-08 400 6 5 13 [+] picture button
SINFRUT00000141771 Homolog of Homo sapiens "Uncharacterized hypothalamus protein HT008 [Source:IPI;Acc:IPI00217261]"
18.1668 -15.59 1.44678e-07 400 4 3 4 [+] picture button
CUL2 SINFRUT00000170972 Cullin-2 (CUL-2). [Source:Uniprot/SWISSPROT;Acc:Q13617]
17.0658 -12.39 2.16726e-07 400 3 14 4 [+] picture button
ATP6V1C1 (2 of 2) SINFRUT00000147913 Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C subunit) (Vacuolar proton pump C subunit). [Source:Uniprot/SWISSPROT;Acc:P21283]
16.0749 -10.87 2.64772e-07 400 6 3 7 [+] picture button
MSX2 SINFRUT00000164436 Homeobox protein MSX-2 (Hox-8). [Source:Uniprot/SWISSPROT;Acc:P35548]
16.185 -8.77 3.49554e-07 400 8 3 12 [+] picture button
FRMPD1 (2 of 2) SINFRUT00000140655 FERM and PDZ domain containing 1 [Source:RefSeq_peptide;Acc:NP_055722]
17.286 -17.65 3.51349e-07 400 6 3 6 [+] picture button
C4orf31 SINFRUT00000130638 Uncharacterized protein C4orf31. [Source:Uniprot/SPTREMBL;Acc:Q8TB73]
16.5153 -11.37 5.79173e-07 400 4 10 4 [+] picture button
AP3S1 SINFRUT00000127147 AP-3 complex subunit sigma-1 (Adapter-related protein complex 3 sigma- 1 subunit) (Sigma-adaptin 3a) (AP-3 complex sigma-3A subunit) (Sigma- 3A-adaptin) (Clathrin-associated/assembly/adapter protein, small 3). [Source:Uniprot/SWISSPROT;Acc:Q92572]
17.4398 -13.51 1.10898e-06 400 10 9 15 [+] picture button
USP44 SINFRUT00000176183 Ubiquitin carboxyl-terminal hydrolase 44 (EC 3.1.2.15) (Ubiquitin thioesterase 44) (Ubiquitin-specific-processing protease 44) (Deubiquitinating enzyme 44). [Source:Uniprot/SWISSPROT;Acc:Q9H0E7]
16.1428 -12.05 1.45131e-06 400 6 6 13 [+] picture button
CHKA SINFRUT00000171515 Choline kinase alpha (EC 2.7.1.32) (CK) (CHETK-alpha). [Source:Uniprot/SWISSPROT;Acc:P35790]
16.7355 -12.9 1.66939e-06 400 6 2 7 [+] picture button
TMEM5 SINFRUT00000158208 Transmembrane protein 5. [Source:Uniprot/SWISSPROT;Acc:Q9Y2B1]
16.5946 -9.86 1.7001e-06 400 5 2 8 [+] picture button
SETD1B SINFRUT00000165579 SET domain-containing protein 1B (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q9UPS6]
17.8514 -10.59 1.71429e-06 400 3 5 5 [+] picture button
Q90519_FUGRU SINFRUT00000154265 Sodium channel alpha subunit (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q90519]
16.0743 -7.44 1.83046e-06 400 2 3 2 [+] picture button
SLC7A10 SINFRUT00000139624 Asc-type amino acid transporter 1 (Asc-1). [Source:Uniprot/SWISSPROT;Acc:Q9NS82]
16.203 -9.69 1.95638e-06 400 7 2 9 [+] picture button
SLC30A4 SINFRUT00000163750 Zinc transporter 4 (ZnT-4) (Solute carrier family 30 member 4). [Source:Uniprot/SWISSPROT;Acc:O14863]
17.9681 -23.35 2.0404e-06 400 9 2 10 [+] picture button
WDR7 SINFRUT00000158518 WD repeat protein 7 (TGF-beta resistance-associated protein TRAG) (Rabconnectin-3 beta). [Source:Uniprot/SWISSPROT;Acc:Q9Y4E6]
17.3961 -15.35 2.12709e-06 400 4 1 4 [+] picture button
FVT1 SINFRUT00000165182 3-ketodihydrosphingosine reductase precursor (EC 1.1.1.102) (3- dehydrosphinganine reductase) (KDS reductase) (Follicular variant translocation protein 1) (FVT-1). [Source:Uniprot/SWISSPROT;Acc:Q06136]
18.2676 -14.4 2.51831e-06 400 6 3 6 [+] picture button
MYCBP2 SINFRUT00000181449 Probable E3 ubiquitin-protein ligase MYCBP2 (EC 6.3.2.-) (Myc-binding protein 2) (Protein associated with Myc) (Pam/highwire/rpm-1 protein). [Source:Uniprot/SWISSPROT;Acc:O75592]
16.1615 -12.74 2.6045e-06 400 6 3 9 [+] picture button
SLC5A3 SINFRUT00000145780 Mitochondrial 28S ribosomal protein S6 (S6mt) (MRP-S6). [Source:Uniprot/SWISSPROT;Acc:P82932]
17.6163 -23.15 2.63095e-06 400 4 1 4 [+] picture button
DFFB SINFRUT00000161476 DNA fragmentation factor subunit beta (EC 3.-.-.-) (DNA fragmentation factor 40 kDa subunit) (DFF-40) (Caspase-activated deoxyribonuclease) (Caspase-activated DNase) (CAD) (Caspase-activated nuclease) (CPAN). [Source:Uniprot/SWISSPROT;Acc:O76075]
16.5153 -10.06 3.1026e-06 400 4 3 9 [+] picture button
RNF41 SINFRUT00000139718 E3 ubiquitin-protein ligase NRDP1 (EC 6.3.2.-) (RING finger protein 41). [Source:Uniprot/SWISSPROT;Acc:Q9H4P4]
17.2239 -18.41 3.19516e-06 400 6 4 9 [+] picture button
BATF SINFRUT00000140228 ATF-like basic leucine zipper transcriptional factor B-ATF (SF-HT- activated gene 2) (SFA-2). [Source:Uniprot/SWISSPROT;Acc:Q16520]
16.0276 -10.3 3.69545e-06 400 5 4 8 [+] picture button
A1A5D9_HUMAN SINFRUT00000154400 Homolog of Gallus gallus "Chick atrial myosin heavy chain. [Source:Uniprot/SPTREMBL;Acc:Q910C5]"
16.7833 -11.73 3.76654e-06 400 7 3 9 [+] picture button
FHL2 (3 of 3) SINFRUT00000153856 Four and a half LIM domains protein 2 (FHL-2) (Skeletal muscle LIM- protein 3) (SLIM 3) (LIM domain protein DRAL). [Source:Uniprot/SWISSPROT;Acc:Q14192]
16.185 -9.34 4.80027e-06 400 9 3 15 [+] picture button
SIRT7 SINFRUT00000137582 NAD-dependent deacetylase sirtuin-7 (EC 3.5.1.-) (SIR2-like protein 7). [Source:Uniprot/SWISSPROT;Acc:Q9NRC8]
16.5851 -15.85 5.64485e-06 400 8 3 9 [+] picture button
ADAMTS1 SINFRUT00000131505 ADAMTS-1 precursor (EC 3.4.24.-) (A disintegrin and metalloproteinase with thrombospondin motifs 1) (ADAM-TS 1) (ADAM-TS1) (METH-1). [Source:Uniprot/SWISSPROT;Acc:Q9UHI8]
18.1434 -16.65 6.26994e-06 400 10 3 13 [+] picture button
ADORA2B SINFRUT00000154463 Adenosine A2b receptor. [Source:Uniprot/SWISSPROT;Acc:P29275]
17.1038 -13.17 6.55278e-06 400 7 4 11 [+] picture button
C10orf97 SINFRUT00000146720 CDNA FLJ13397 fis, clone PLACE1001351 (Novel protein) (Chromosome 10 open reading frame 97) (Hypothetical protein DKFZp547B174) (DERP5) (Dermal papilla derived protein 5). [Source:Uniprot/SPTREMBL;Acc:Q9H8M7]
16.0886 -9.61 7.47886e-06 400 5 2 7 [+] picture button
MAN1A1 SINFRUT00000135965 Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA (EC 3.2.1.113) (Processing alpha-1,2-mannosidase IA) (Alpha-1,2-mannosidase IA) (Mannosidase alpha class 1A member 1) (Man(9)-alpha-mannosidase) (Man9-mannosidase). [Source:Uniprot/SWISSPROT;Acc:P33908]
16.469 -12.66 7.6274e-06 400 6 2 10 [+] picture button
VIP SINFRUT00000129374 VIP peptides precursor [Contains: Intestinal peptide PHV-42; Intestinal peptide PHM-27 (Peptide histidine methioninamide 27); Vasoactive intestinal peptide (VIP) (Vasoactive intestinal polypeptide)]. [Source:Uniprot/SWISSPROT;Acc:P01282]
16.3056 -12.05 8.0273e-06 400 2 1 2 [+] picture button
ZDHHC21 SINFRUT00000130672 Probable palmitoyltransferase ZDHHC21 (EC 2.3.1.-) (Zinc finger DHHC domain-containing protein 21) (DHHC-21). [Source:Uniprot/SWISSPROT;Acc:Q8IVQ6]
16.466 -19.78 8.06779e-06 400 6 2 11 [+] picture button
TTPA SINFRUT00000160140 Alpha-tocopherol transfer protein (Alpha-TTP). [Source:Uniprot/SWISSPROT;Acc:P49638]
16.0749 -9.44 8.08974e-06 400 7 2 12 [+] picture button
KCTD3 SINFRUT00000141609 BTB/POZ domain-containing protein KCTD3 (Renal carcinoma antigen NY- REN-45). [Source:Uniprot/SWISSPROT;Acc:Q9Y597]
16.185 -12.1 8.25909e-06 400 6 2 6 [+] picture button
TBX20 SINFRUT00000148188 T-box transcription factor TBX20 (T-box protein 20). [Source:Uniprot/SWISSPROT;Acc:Q9UMR3]
16.7355 -19.19 8.42345e-06 400 6 1 8 [+] picture button
LSM1 SINFRUT00000137118 U6 snRNA-associated Sm-like protein LSm1 (Small nuclear ribonuclear CaSm) (Cancer-associated Sm-like). [Source:Uniprot/SWISSPROT;Acc:O15116]
16.4052 -17.42 8.53697e-06 400 7 2 15 [+] picture button
SKIV2L SINFRUT00000153955 superkiller viralicidic activity 2-like homolog [Source:RefSeq_peptide;Acc:NP_008860]
18.038 -15.11 8.66138e-06 400 6 2 10 [+] picture button
KLHDC5 SINFRUT00000165396 Kelch domain-containing protein 5. [Source:Uniprot/SWISSPROT;Acc:Q9P2K6]
17.3961 -16.93 8.80496e-06 400 4 3 5 [+] picture button
PHGDH SINFRUT00000149285 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) (3-PGDH). [Source:Uniprot/SWISSPROT;Acc:O43175]
16.185 -8.92 9.01036e-06 400 9 2 18 [+] picture button
EPB41L5 SINFRUT00000128609 Band 4.1-like protein 5. [Source:Uniprot/SWISSPROT;Acc:Q9HCM4]
16.5919 -15.85 9.33932e-06 400 5 1 9 [+] picture button
RNMT SINFRUT00000135983 mRNA cap guanine-N7 methyltransferase (EC 2.1.1.56) (mRNA (guanine- N(7)-)-methyltransferase) (RG7MT1) (mRNA cap methyltransferase) (hcm1p) (hCMT1) (hMet). [Source:Uniprot/SWISSPROT;Acc:O43148]
16.1382 -8.44 9.98144e-06 400 3 3 6 [+] picture button
CTSH SINFRUT00000172785 Cathepsin H precursor (EC 3.4.22.16) [Contains: Cathepsin H mini chain; Cathepsin H heavy chain; Cathepsin H light chain]. [Source:Uniprot/SWISSPROT;Acc:P09668]
16.5153 -9.99 1.09108e-05 400 6 1 6 [+] picture button
FKBP3 SINFRUT00000144593 FK506-binding protein 3 (EC 5.2.1.8) (Peptidyl-prolyl cis-trans isomerase) (PPIase) (Rotamase) (25 kDa FKBP) (FKBP-25) (Rapamycin- selective 25 kDa immunophilin). [Source:Uniprot/SWISSPROT;Acc:Q00688]
16.2951 -10.32 1.10709e-05 400 5 1 7 [+] picture button
TNFAIP8L3 SINFRUT00000165316 tumor necrosis factor, alpha-induced protein 8-like 3 [Source:RefSeq_peptide;Acc:NP_997264]
16.5985 -11.62 1.13722e-05 400 7 2 11 [+] picture button
RGS2 SINFRUT00000169746 Regulator of G-protein signaling 2 (RGS2) (G0/G1 switch regulatory protein 8). [Source:Uniprot/SWISSPROT;Acc:P41220]
16.451 -11.28 1.15306e-05 400 3 2 3 [+] picture button
GRK6 SINFRUT00000146838 G protein-coupled receptor kinase 6 (EC 2.7.11.16) (G protein-coupled receptor kinase GRK6). [Source:Uniprot/SWISSPROT;Acc:P43250]
17.1759 -11.16 1.2154e-05 400 4 2 8 [+] picture button

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Download table: GFF TXT
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