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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Takifugu rubripes and fru-miR-25

797 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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KBTBD8 SINFRUT00000132577 Kelch repeat and BTB domain-containing protein 8 (T-cell activation Kelch repeat protein) (TA-KRP). [Source:Uniprot/SWISSPROT;Acc:Q8NFY9]
18.3857 -24.37 0.000000014868 400 7 4 11 [+] picture button
SLC25A42 SINFRUT00000163526 solute carrier family 25, member 42 [Source:RefSeq_peptide;Acc:NP_848621]
16.9265 -15.58 0.0000000544392 400 4 2 7 [+] picture button
CXXC5 SINFRUT00000171112 CXXC finger 5 [Source:RefSeq_peptide;Acc:NP_057547]
18.1925 -24.01 0.0000000598715 400 3 11 8 [+] picture button
ATOH7 SINFRUT00000137777 atonal homolog 7 [Source:RefSeq_peptide;Acc:NP_660161]
16.9935 -16.45 0.0000000686377 400 8 3 14 [+] picture button
HERC2 SINFRUT00000159260 Probable E3 ubiquitin-protein ligase HERC2 (EC 6.3.2.-) (HECT domain and RCC1-like domain-containing protein 2). [Source:Uniprot/SWISSPROT;Acc:O95714]
17.286 -18.93 0.0000000799803 400 6 2 10 [+] picture button
DHX32 (2 of 2) SINFRUT00000160835 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 32 [Source:RefSeq_peptide;Acc:NP_060650]
16.5153 -26.01 0.000000081642 400 5 3 8 [+] picture button
HAND1 SINFRUT00000135240 Heart- and neural crest derivatives-expressed protein 1 (Extraembryonic tissues, heart, autonomic nervous system and neural crest derivatives-expressed protein 1) (eHAND). [Source:Uniprot/SWISSPROT;Acc:O96004]
15.8547 -14.81 0.0000000897114 400 6 2 14 [+] picture button
O13150_FUGRU SINFRUT00000131723 Achaete-scute homolog 1. [Source:Uniprot/SPTREMBL;Acc:O13150]
17.9466 -14.32 0.0000001207 400 6 3 10 [+] picture button
HIVEP3 SINFRUT00000152410 human immunodeficiency virus type I enhancer binding protein 3 [Source:RefSeq_peptide;Acc:NP_078779]
16.2951 -11.18 0.000000141684 400 4 13 7 [+] picture button
IQWD1 SINFRUT00000169527 IQ motif and WD repeats 1 isoform a [Source:RefSeq_peptide;Acc:NP_060912]
17.0658 -18.36 0.00000022024 400 10 6 17 [+] picture button
HOXD3 SINFRUT00000131831 Homeobox protein Hox-D3 (Hox-4A). [Source:Uniprot/SWISSPROT;Acc:P31249]
18.0181 -21.03 0.000000245795 400 9 4 16 [+] picture button
EM55_FUGRU SINFRUT00000138881 55 kDa erythrocyte membrane protein (p55) (Membrane protein, palmitoylated 1). [Source:Uniprot/SWISSPROT;Acc:P49697]
17.7264 -15.24 0.000000317749 400 9 4 12 [+] picture button
GRAMD1B SINFRUT00000148038 GRAM domain containing 1B [Source:RefSeq_peptide;Acc:NP_065767]
16.4052 -25.64 0.000000482529 400 6 4 15 [+] picture button
ANLN SINFRUT00000172687 Actin-binding protein anillin. [Source:Uniprot/SWISSPROT;Acc:Q9NQW6]
18.4261 -14.68 0.00000065652 400 4 2 11 [+] picture button
COX7A2L SINFRUT00000164070 Cytochrome c oxidase subunit VIIa-related protein, mitochondrial precursor (COX7a-related protein) (EB1). [Source:Uniprot/SWISSPROT;Acc:O14548]
16.2951 -30.69 0.000001 400 6 1 3 [+] picture button
SINFRUT00000183257 Homolog of Homo sapiens "Splice Isoform 2 of Homeodomain-interacting protein kinase 3 [Source:IPI;Acc:IPI00554546]"
18.2769 -16.38 0.000001 400 7 1 8 [+] picture button
SINFRUT00000183502 NOT ANNOTATED
17.3961 -22.02 0.00000117125 400 6 3 9 [+] picture button
LMTK2 SINFRUT00000135332 Serine/threonine-protein kinase LMTK2 precursor (EC 2.7.11.1) (Lemur tyrosine kinase 2) (Serine/threonine protein kinase KPI-2) (Kinase/phosphatase/inhibitor 2) (Apoptosis-associated tyrosine kinase 2) (Brain-enriched kinase) (hBREK) (CDK5/p35-regulated k [Source:Uniprot/SWISSPROT;Acc:Q8IWU2]
16.0003 -11.58 0.00000160071 400 6 4 12 [+] picture button
USP13 SINFRUT00000167340 Ubiquitin carboxyl-terminal hydrolase 13 (EC 3.1.2.15) (Ubiquitin thioesterase 13) (Ubiquitin-specific-processing protease 13) (Deubiquitinating enzyme 13) (Isopeptidase T-3) (ISOT-3). [Source:Uniprot/SWISSPROT;Acc:Q92995]
17.3961 -15.38 0.0000026976 400 2 4 5 [+] picture button
C9orf150 SINFRUT00000159213 Uncharacterized protein C9orf150. [Source:Uniprot/SWISSPROT;Acc:Q8IV03]
17.0658 -15.27 0.00000344451 400 4 2 7 [+] picture button
PHTF2 SINFRUT00000169897 putative homeodomain transcription factor 2 [Source:RefSeq_peptide;Acc:NP_065165]
15.7096 -17.24 0.00000567358 400 4 3 8 [+] picture button
KIAA1279 SINFRUT00000130234 Uncharacterized protein KIAA1279. [Source:Uniprot/SWISSPROT;Acc:Q96EK5]
16.8456 -14.71 0.00000637143 400 8 2 12 [+] picture button
NUDT7_HUMAN SINFRUT00000169050 Peroxisomal coenzyme A diphosphatase NUDT7 (EC 3.6.1.-) (Nucleoside diphosphate-linked moiety X motif 7) (Nudix motif 7). [Source:Uniprot/SWISSPROT;Acc:P0C024]
18.0567 -19.33 0.00000693809 400 7 3 15 [+] picture button
PTGES SINFRUT00000158509 Prostaglandin E synthase (EC 5.3.99.3) (Microsomal glutathione S- transferase 1-like 1) (MGST1-L1) (p53-induced apoptosis protein 12). [Source:Uniprot/SWISSPROT;Acc:O14684]
16.0052 -13.42 0.00000706654 400 6 2 11 [+] picture button
FRY (1 of 2) SINFRUT00000152066 Protein furry homolog. [Source:Uniprot/SWISSPROT;Acc:Q5TBA9]
17.2239 -13.11 0.00000834387 400 5 5 13 [+] picture button
ATXN1 (2 of 2) SINFRUT00000145174 Ataxin-1 (Spinocerebellar ataxia type 1 protein). [Source:Uniprot/SWISSPROT;Acc:P54253]
19.4937 -22.6 0.00000850773 400 6 4 11 [+] picture button
GOLGA2 SINFRUT00000182186 Golgin subfamily A member 2 (Cis-Golgi matrix protein GM130) (Gm130 autoantigen) (Golgin-95). [Source:Uniprot/SWISSPROT;Acc:Q08379]
16.8753 -13.65 0.00000894987 400 4 2 6 [+] picture button
VPS54 SINFRUT00000134909 Vacuolar protein sorting-associated protein 54 (Tumor antigen SLP-8p) (Hepatocellular carcinoma protein 8). [Source:Uniprot/SWISSPROT;Acc:Q9P1Q0]
15.705 -12.57 0.00000897568 400 3 3 7 [+] picture button
GFPT2 SINFRUT00000157106 Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 2 (EC 2.6.1.16) (Hexosephosphate aminotransferase 2) (D-fructose-6- phosphate amidotransferase 2) (GFAT 2) (GFAT2). [Source:Uniprot/SWISSPROT;Acc:O94808]
17.1128 -12.97 0.00000900814 400 7 3 14 [+] picture button
KCNJ2 (2 of 2) SINFRUT00000137388 Inward rectifier potassium channel 2 (Potassium channel, inwardly rectifying subfamily J member 2) (Inward rectifier K(+) channel Kir2.1) (Cardiac inward rectifier potassium channel) (IRK1). [Source:Uniprot/SWISSPROT;Acc:P63252]
17.1759 -10.91 0.00000931514 400 6 1 16 [+] picture button
PPP2R3A SINFRUT00000137636 Serine/threonine-protein phosphatase 2A 72/130 kDa regulatory subunit B (PP2A, subunit B, B''-PR72/PR130) (PP2A, subunit B, B72/B130 isoforms) (PP2A, subunit B, PR72/PR130 isoforms) (PP2A, subunit B, R3 isoform). [Source:Uniprot/SWISSPROT;Acc:Q06190]
16.5153 -11.46 0.0000102909 400 3 2 6 [+] picture button
SINFRUT00000174162 Homolog of Homo sapiens "Splice Isoform 1 of Anthrax toxin receptor 1 precursor [Source:IPI;Acc:IPI00030431]"
18.2118 -20.52 0.0000109623 400 7 4 12 [+] picture button
LAMA3 SINFRUT00000165188 Laminin subunit alpha-3 precursor (Epiligrin 170 kDa subunit) (E170) (Nicein subunit alpha). [Source:Uniprot/SWISSPROT;Acc:Q16787]
16.8363 -13.01 0.0000141677 400 6 2 13 [+] picture button
KLHL12 SINFRUT00000178823 Kelch-like protein 12 (CUL3-interacting protein 1). [Source:Uniprot/SWISSPROT;Acc:Q53G59]
16.5567 -11.29 0.0000141726 400 4 4 7 [+] picture button
USP14 SINFRUT00000174418 Ubiquitin carboxyl-terminal hydrolase 14 (EC 3.1.2.15) (Ubiquitin thioesterase 14) (Ubiquitin-specific-processing protease 14) (Deubiquitinating enzyme 14). [Source:Uniprot/SWISSPROT;Acc:P54578]
16.5153 -13.96 0.0000156496 400 8 4 13 [+] picture button
MIF4GD SINFRUT00000179445 MIF4G domain containing [Source:RefSeq_peptide;Acc:NP_065730]
16.6254 -16.21 0.0000161823 400 7 2 12 [+] picture button
SINFRUT00000143826 Homolog of Homo sapiens "OTTHUMP00000017331 [Source:IPI;Acc:IPI00012440]"
18.4971 -23.51 0.0000162929 400 7 4 10 [+] picture button
CENTG1 (2 of 2) SINFRUT00000169390 Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like, ankyrin repeat and pleckstrin homology domains 2) (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE) (GTP-binding and GTPase-activating protein 2) (GGAP2). [Source:Uniprot/SWISSPROT;Acc:Q99490]
17.3961 -14.49 0.0000166209 400 7 4 11 [+] picture button
SLC32A1 (2 of 2) SINFRUT00000151776 Vesicular inhibitory amino acid transporter (GABA and glycine transporter) (Vesicular GABA transporter) (hVIAAT) (Solute carrier family 32 member 1). [Source:Uniprot/SWISSPROT;Acc:Q9H598]
18.1487 -21.75 0.0000187831 400 4 4 7 [+] picture button
GRIA1 (1 of 2) SINFRUT00000168907 Glutamate receptor 1 precursor (GluR-1) (GluR-A) (GluR-K1) (Glutamate receptor ionotropic, AMPA 1) (AMPA-selective glutamate receptor 1). [Source:Uniprot/SWISSPROT;Acc:P42261]
16.451 -14.72 0.0000218028 400 7 7 10 [+] picture button
CRAMP1L (2 of 2) SINFRUT00000172550 Protein cramped-like (Hematological and neurological-expressed 1-like protein). [Source:Uniprot/SWISSPROT;Acc:Q96RY5]
18.2295 -13.79 0.0000229063 400 7 4 9 [+] picture button
ACADM SINFRUT00000168106 Medium-chain specific acyl-CoA dehydrogenase, mitochondrial precursor (EC 1.3.99.3) (MCAD). [Source:Uniprot/SWISSPROT;Acc:P11310]
16.0508 -6.29 0.0000261019 400 3 3 4 [+] picture button
SELI_HUMAN SINFRUT00000167322 Selenoprotein I. [Source:Uniprot/SWISSPROT;Acc:Q9C0D9]
18.5186 -22.84 0.0000261585 400 3 3 10 [+] picture button
Q804S3_FUGRU SINFRUT00000127576 Bone morphogenetic protein 2. [Source:Uniprot/SPTREMBL;Acc:Q804S3]
17.8167 -13.47 0.0000272028 400 5 5 9 [+] picture button
KCNA10 (1 of 2) SINFRUT00000175780 potassium voltage-gated channel, shaker-related subfamily, member 10 [Source:RefSeq_peptide;Acc:NP_005540]
17.1759 -13.34 0.0000280525 400 8 4 17 [+] picture button
SNX14 (2 of 2) SINFRUT00000174548 Sorting nexin-14. [Source:Uniprot/SWISSPROT;Acc:Q9Y5W7]
18.2753 -23.43 0.0000354035 400 4 3 10 [+] picture button
PDHB SINFRUT00000157804 Pyruvate dehydrogenase E1 component subunit beta, mitochondrial precursor (EC 1.2.4.1) (PDHE1-B). [Source:Uniprot/SWISSPROT;Acc:P11177]
17.7009 -19.51 0.0000376755 400 7 4 9 [+] picture button
TSPAN3 (2 of 2) SINFRUT00000148593 Tetraspanin-3 (Tspan-3) (Transmembrane 4 superfamily member 8) (Tetraspanin TM4-A). [Source:Uniprot/SWISSPROT;Acc:O60637]
17.0658 -16.77 0.0000402606 400 8 4 13 [+] picture button
COL1A2 SINFRUT00000144114 Collagen alpha-2(I) chain precursor. [Source:Uniprot/SWISSPROT;Acc:P08123]
17.4567 -26.26 0.0000437196 400 6 7 11 [+] picture button
C1orf131 SINFRUT00000156710 C1orf131 protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q7Z6H5]
17.5903 -23.25 0.000045737 400 4 3 7 [+] picture button

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Download table: GFF TXT
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