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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Takifugu rubripes and fru-miR-189

714 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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SFXN3 SINFRUT00000165340 Sideroflexin-3. [Source:Uniprot/SWISSPROT;Acc:Q9BWM7]
15.4314 -17.11 0.000000143017 400 6 2 10 [+] picture button
ACAA2 SINFRUT00000154966 3-ketoacyl-CoA thiolase, mitochondrial (EC 2.3.1.16) (Beta- ketothiolase) (Acetyl-CoA acyltransferase) (Mitochondrial 3-oxoacyl- CoA thiolase) (T1). [Source:Uniprot/SWISSPROT;Acc:P42765]
15.6679 -20.32 0.0000018917 400 6 2 11 [+] picture button
SINFRUT00000159391 Homolog of Homo sapiens "Twist homolog 2 (Drosophila) [Source:UniGene;Acc:Hs.534531]"
15.9966 -24 0.00000674012 400 3 5 3 [+] picture button
USP44 SINFRUT00000176183 Ubiquitin carboxyl-terminal hydrolase 44 (EC 3.1.2.15) (Ubiquitin thioesterase 44) (Ubiquitin-specific-processing protease 44) (Deubiquitinating enzyme 44). [Source:Uniprot/SWISSPROT;Acc:Q9H0E7]
16.614 -20.32 0.0000105002 400 6 6 13 [+] picture button
CHST13 SINFRUT00000156740 Carbohydrate sulfotransferase 13 (EC 2.8.2.5) (Chondroitin 4-O- sulfotransferase 3) (Chondroitin 4-sulfotransferase 3) (C4ST3) (C4ST- 3). [Source:Uniprot/SWISSPROT;Acc:Q8NET6]
14.9009 -17.4 0.000011573 400 7 2 20 [+] picture button
PIGU SINFRUT00000163962 GPI transamidase component PIG-U (Phosphatidylinositol-glycan biosynthesis class U protein) (Cell division cycle protein 91-like 1) (CDC91-like 1 protein). [Source:Uniprot/SWISSPROT;Acc:Q9H490]
16.3928 -21.38 0.0000133342 400 6 5 9 [+] picture button
B3GAT1 SINFRUT00000147055 Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 (EC 2.4.1.135) (Beta-1,3-glucuronyltransferase 1) (Glucuronosyltransferase-P) (GlcAT-P) (UDP-GlcUA:glycoprotein beta- 1,3-glucuronyltransferase) (GlcUAT-P). [Source:Uniprot/SWISSPROT;Acc:Q9P2W7]
17.8748 -20.01 0.0000172167 400 4 1 7 [+] picture button
EEF1E1 SINFRUT00000181613 Eukaryotic translation elongation factor 1 epsilon-1 (Multisynthetase complex auxiliary component p18) (Elongation factor p18). [Source:Uniprot/SWISSPROT;Acc:O43324]
15.6877 -23.29 0.0000178631 400 6 2 9 [+] picture button
NXPH1 SINFRUT00000156786 Neurexophilin-1 precursor. [Source:Uniprot/SWISSPROT;Acc:P58417]
15.2296 -15.65 0.0000185969 400 6 2 10 [+] picture button
Q6WNS8_FUGRU SINFRUT00000130972 Transcription factor Sox9b. [Source:Uniprot/SPTREMBL;Acc:Q6WNS8]
19.212 -25.12 0.0000213629 400 9 7 11 [+] picture button
HUS1 SINFRUT00000180912 Checkpoint protein HUS1B (hHUS1B). [Source:Uniprot/SWISSPROT;Acc:Q8NHY5]
17.5305 -23.83 0.0000226704 400 3 1 3 [+] picture button
C1orf160 (2 of 2) SINFRUT00000174390 Uncharacterized protein C1orf160. [Source:Uniprot/SWISSPROT;Acc:Q9H0R3]
16.0593 -19.7 0.0000316545 400 6 3 14 [+] picture button
RERE SINFRUT00000134617 Arginine-glutamic acid dipeptide repeats protein (Atrophin-1-like protein) (Atrophin-1-related protein). [Source:Uniprot/SWISSPROT;Acc:Q9P2R6]
15.2733 -18.45 0.0000345923 400 5 3 7 [+] picture button
SINFRUT00000182874 Homolog of Homo sapiens "CTD-binding SR-like protein rA9 [Source:IPI;Acc:IPI00001813]"
19.3931 -16.44 0.0000358347 400 6 2 6 [+] picture button
MRPL28 SINFRUT00000130901 39S ribosomal protein L28, mitochondrial precursor (L28mt) (MRP-L28) (Melanoma antigen p15) (Melanoma-associated antigen recognized by T lymphocytes). [Source:Uniprot/SWISSPROT;Acc:Q13084]
15.12 -17.74 0.0000466407 400 7 1 9 [+] picture button
ZBTB45 SINFRUT00000175523 Zinc finger and BTB domain-containing protein 45 (Zinc finger protein 499). [Source:Uniprot/SWISSPROT;Acc:Q96K62]
15.9966 -22.46 0.0000471289 400 3 2 4 [+] picture button
ING4 SINFRUT00000156111 Inhibitor of growth protein 4 (p29ING4). [Source:Uniprot/SWISSPROT;Acc:Q9UNL4]
15.2919 -16.05 0.0000662904 400 7 3 7 [+] picture button
AARS2 SINFRUT00000144283 Probable alanyl-tRNA synthetase, mitochondrial precursor (EC 6.1.1.7) (Alanine--tRNA ligase) (AlaRS) (Alanyl-tRNA synthetase-like). [Source:Uniprot/SWISSPROT;Acc:Q5JTZ9]
15.4487 -18.09 0.0000931191 400 5 2 8 [+] picture button
UHRF2 SINFRUT00000155873 E3 ubiquitin-protein ligase UHRF2 (EC 6.3.2.-) (Ubiquitin-like PHD and RING finger domain-containing protein 2) (Ubiquitin-like-containing PHD and RING finger domains protein 2) (Np95/ICBP90-like RING finger protein) (Np95-like RING finger protein) (Nucle [Source:Uniprot/SWISSPROT;Acc:Q96PU4]
15.3392 -19.21 0.0000941336 400 4 4 5 [+] picture button
SINFRUT00000144312 Homolog of Homo sapiens "Coiled-coil domain containing protein 13 [Source:IPI;Acc:IPI00065051]"
15.4487 -19.66 0.000113707 400 4 2 5 [+] picture button
NGB SINFRUT00000152742 Neuroglobin. [Source:Uniprot/SWISSPROT;Acc:Q9NPG2]
16.3253 -19.89 0.000139785 400 7 3 8 [+] picture button
CAP2 SINFRUT00000163371 Adenylyl cyclase-associated protein 2 (CAP 2). [Source:Uniprot/SWISSPROT;Acc:P40123]
15.4487 -20.39 0.00014386 400 8 2 15 [+] picture button
CCND1 SINFRUT00000152106 G1/S-specific cyclin-D1 (PRAD1 oncogene) (BCL-1 oncogene). [Source:Uniprot/SWISSPROT;Acc:P24385]
15.417 -20.39 0.000163064 400 1 1 1 [+] picture button
NP_114110.1 SINFRUT00000138817 CDNA FLJ90369 fis, clone NT2RP2004447. [Source:Uniprot/SPTREMBL;Acc:Q8NCB5]
15.6679 -21.84 0.000198388 400 6 3 6 [+] picture button
RAD51 SINFRUT00000163886 DNA repair protein RAD51 homolog 1 (hRAD51) (HsRAD51). [Source:Uniprot/SWISSPROT;Acc:Q06609]
15.0105 -16.93 0.00019869 400 7 4 7 [+] picture button
PRKAR1A SINFRUT00000146993 cAMP-dependent protein kinase type I-alpha regulatory subunit (Tissue- specific extinguisher 1) (TSE1). [Source:Uniprot/SWISSPROT;Acc:P10644]
16.9827 -20.5 0.000205841 400 6 4 6 [+] picture button
DMXL1 SINFRUT00000162769 Protein DmX-like 1 (X-like 1 protein). [Source:Uniprot/SWISSPROT;Acc:Q9Y485]
16.2157 -22.01 0.000209623 400 6 2 6 [+] picture button
SREBF1 SINFRUT00000180145 Sterol regulatory element-binding protein 1 (SREBP-1) (Sterol regulatory element-binding transcription factor 1). [Source:Uniprot/SWISSPROT;Acc:P36956]
15.887 -23.71 0.000227291 400 8 2 10 [+] picture button
SLC25A18 SINFRUT00000170193 Mitochondrial glutamate carrier 2 (GC-2) (Glutamate/H(+) symporter 2) (Solute carrier family 25 member 18). [Source:Uniprot/SWISSPROT;Acc:Q9H1K4]
15.6679 -15.07 0.000243184 400 5 1 7 [+] picture button
C13orf24 SINFRUT00000140742 Progesterone-induced-blocking factor 1. [Source:Uniprot/SWISSPROT;Acc:Q8WXW3]
15.2296 -15.41 0.000260762 400 6 1 10 [+] picture button
K0431_HUMAN SINFRUT00000159695 Uncharacterized protein KIAA0431. [Source:Uniprot/SWISSPROT;Acc:O43313]
17.0922 -19.64 0.000274731 400 6 2 9 [+] picture button
Q5JZ71_HUMAN SINFRUT00000134042 OTTHUMP00000028979 (KIAA1644 protein). [Source:Uniprot/SPTREMBL;Acc:Q5JZ71]
15.1536 -19.25 0.00031502 400 5 2 8 [+] picture button
Q5TIE3_HUMAN SINFRUT00000131381 Novel protein. [Source:Uniprot/SPTREMBL;Acc:Q5TIE3]
15.0105 -14.76 0.00031863 400 10 3 13 [+] picture button
ZNF346 SINFRUT00000135244 Zinc finger protein 346 (Just another zinc finger protein). [Source:Uniprot/SWISSPROT;Acc:Q9UL40]
15.8213 -18.2 0.00032168 400 7 2 8 [+] picture button
ABL2 SINFRUT00000176586 Tyrosine-protein kinase ABL2 (EC 2.7.10.2) (Abelson murine leukemia viral oncogene homolog 2) (Abelson-related gene protein) (Tyrosine kinase ARG). [Source:Uniprot/SWISSPROT;Acc:P42684]
16.7635 -21.78 0.000333078 400 5 2 5 [+] picture button
KCNK1 SINFRUT00000148232 Potassium channel subfamily K member 1 (Inward rectifying potassium channel protein TWIK-1) (Potassium channel KCNO1). [Source:Uniprot/SWISSPROT;Acc:O00180]
16.3253 -17.25 0.000349666 400 7 2 8 [+] picture button
RNF146 (2 of 2) SINFRUT00000128959 RING finger protein 146 (Dactylidin). [Source:Uniprot/SWISSPROT;Acc:Q9NTX7]
16.654 -17.87 0.000356977 400 6 1 7 [+] picture button
NP_001013754.1 SINFRUT00000147787 similar to dJ402H5.2 (novel protein similar to worm and fly proteins) (LOC442213), mRNA [Source:RefSeq_dna;Acc:NM_001013732]
16.654 -17.07 0.000356977 400 6 2 5 [+] picture button
HNRPU SINFRUT00000154023 Heterogeneous nuclear ribonucleoprotein U (hnRNP U) (Scaffold attachment factor A) (SAF-A) (p120) (pp120). [Source:Uniprot/SWISSPROT;Acc:Q00839]
14.8532 -17.5 0.000361523 400 3 2 4 [+] picture button
RAB5B SINFRUT00000155310 Ras-related protein Rab-5B. [Source:Uniprot/SWISSPROT;Acc:P61020]
17.6347 -25.4 0.00037999 400 3 2 4 [+] picture button
Q69YJ1_HUMAN SINFRUT00000129493 Homolog of Homo sapiens "Pleckstrin homology domain containing, family M (With RUN domain) member 1 [Source:IPI;Acc:IPI00000764]"
17.5305 -25.22 0.000391379 400 6 2 8 [+] picture button
NP_001073947.1 SINFRUT00000181247 leucine-rich repeat-containing protein 14-like (LOC389257), mRNA [Source:RefSeq_dna;Acc:NM_001080478]
15.3392 -16.04 0.000392217 400 4 3 5 [+] picture button
BTBD3 (1 of 2) SINFRUT00000164497 BTB/POZ domain-containing protein 3. [Source:Uniprot/SWISSPROT;Acc:Q9Y2F9]
14.7863 -17.07 0.000396752 400 8 4 13 [+] picture button
PSCDBP SINFRUT00000142583 Pleckstrin homology Sec7 and coiled-coil domains-binding protein (Cytohesin-binding protein HE) (CYBR) (Cytohesin binder and regulator) (Cytohesin-interacting protein). [Source:Uniprot/SWISSPROT;Acc:O60759]
15.5583 -17 0.000405715 400 7 2 9 [+] picture button
SINFRUT00000148414 Homolog of Homo sapiens "Neurexophilin-1 precursor [Source:IPI;Acc:IPI00048230]"
18.5166 -23.4 0.000407587 400 6 2 9 [+] picture button
FBXO33 SINFRUT00000158478 F-box only protein 33. [Source:Uniprot/SWISSPROT;Acc:Q7Z6M2]
15.3392 -16.63 0.000410437 400 6 4 8 [+] picture button
GCC2 SINFRUT00000143156 Ran-binding protein 2-like 4 (RanBP2L4). [Source:Uniprot/SWISSPROT;Acc:Q4ZG46]
16.8731 -17.19 0.000428994 400 6 1 14 [+] picture button
HTR3A SINFRUT00000156928 5-hydroxytryptamine 3 receptor precursor (5-HT-3) (Serotonin-gated ion channel receptor) (5-HT3R). [Source:Uniprot/SWISSPROT;Acc:P46098]
18.0187 -28.21 0.000440063 400 7 2 9 [+] picture button
MCM6 SINFRUT00000137818 DNA replication licensing factor MCM6 (p105MCM). [Source:Uniprot/SWISSPROT;Acc:Q14566]
15.0909 -13.5 0.000445819 400 5 1 6 [+] picture button
PHF20 SINFRUT00000183017 PHD finger protein 20 (Hepatocellular carcinoma-associated antigen 58) (Glioma-expressed antigen 2) (Transcription factor TZP) (Novel zinc finger protein). [Source:Uniprot/SWISSPROT;Acc:Q9BVI0]
15.0105 -19.43 0.000448522 400 4 2 6 [+] picture button

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Download table: GFF TXT
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