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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Takifugu rubripes and fru-miR-187

732 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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SRP19 SINFRUT00000163274 Signal recognition particle 19 kDa protein (SRP19). [Source:Uniprot/SWISSPROT;Acc:P09132]
16.3531 -21.87 5.59198e-07 400 6 1 8 [+] picture button
C8B SINFRUT00000158187 Complement component C8 beta chain precursor (Complement component 8 subunit beta). [Source:Uniprot/SWISSPROT;Acc:P07358]
16.3566 -15.43 9.87012e-07 400 4 2 6 [+] picture button
JMJD2C SINFRUT00000151439 JmjC domain-containing histone demethylation protein 3C (EC 1.14.11.-) (Jumonji domain-containing protein 2C) (Gene amplified in squamous cell carcinoma 1 protein) (GASC-1 protein). [Source:Uniprot/SWISSPROT;Acc:Q9H3R0]
16.3566 -19.49 1e-06 400 12 1 2 [+] picture button
CDR1 SINFRUT00000180937 cerebellar degeneration-related protein 1, 34kDa [Source:RefSeq_peptide;Acc:NP_004056]
17.6918 -22.06 1e-06 400 10 1 5 [+] picture button
BHLHB2 (2 of 2) SINFRUT00000141506 Class B basic helix-loop-helix protein 2 (bHLHB2) (Differentially expressed in chondrocytes protein 1) (DEC1) (Enhancer-of-split and hairy-related protein 2) (SHARP-2) (Stimulated by retinoic acid gene 13 protein). [Source:Uniprot/SWISSPROT;Acc:O14503]
20.0285 -27.82 1.65688e-06 400 7 4 11 [+] picture button
CRHBP SINFRUT00000136496 Corticotropin-releasing factor-binding protein precursor (CRF-binding protein) (CRF-BP) (Corticotropin-releasing hormone-binding protein) (CRH-BP). [Source:Uniprot/SWISSPROT;Acc:P24387]
17.6711 -19.84 1.38964e-05 400 5 3 12 [+] picture button
R3HDM2 SINFRUT00000179397 R3H domain-containing protein 2 (Fragment). [Source:Uniprot/SWISSPROT;Acc:Q9Y2K5]
18.7354 -24.84 3.44953e-05 400 5 4 7 [+] picture button
DKK4 SINFRUT00000167458 Dickkopf-related protein 4 precursor (Dkk-4) (Dickkopf-4) (hDkk-4) [Contains: Dickkopf-related protein 4 short form]. [Source:Uniprot/SWISSPROT;Acc:Q9UBT3]
17.5806 -19.35 4.43208e-05 400 7 2 5 [+] picture button
C10orf137 SINFRUT00000131206 erythroid differentiation-related factor 1 [Source:RefSeq_peptide;Acc:NP_056423]
18.1369 -18.46 4.45632e-05 400 6 5 5 [+] picture button
CRMP1 SINFRUT00000149349 Dihydropyrimidinase-related protein 1 (DRP-1) (Collapsin response mediator protein 1) (CRMP-1). [Source:Uniprot/SWISSPROT;Acc:Q14194]
17.358 -21.91 4.46181e-05 400 5 2 6 [+] picture button
WDFY2 SINFRUT00000142627 WD repeat and FYVE domain-containing protein 2 (WD40- and FYVE domain- containing protein 2) (Zinc finger FYVE domain-containing protein 22). [Source:Uniprot/SWISSPROT;Acc:Q96P53]
16.9129 -24.23 5.00238e-05 400 6 4 10 [+] picture button
SINFRUT00000182219 Homolog of Homo sapiens "Splice Isoform 1 of Potential helicase Mov10l1 [Source:IPI;Acc:IPI00005638]"
17.1355 -19.37 5.17039e-05 400 7 2 6 [+] picture button
SINFRUT00000180611 NOT ANNOTATED
16.8975 -12.74 6.42704e-05 400 3 1 2 [+] picture button
CAPG SINFRUT00000158882 Macrophage-capping protein (Actin-regulatory protein CAP-G). [Source:Uniprot/SWISSPROT;Acc:P40121]
18.1079 -18.7 6.63136e-05 400 5 2 3 [+] picture button
AP4M1 SINFRUT00000131004 AP-4 complex subunit mu-1 (Adapter-related protein complex 4 mu-1 subunit) (Mu subunit of AP-4) (AP-4 adapter complex mu subunit) (Mu- adaptin-related protein 2) (mu-ARP2) (mu4). [Source:Uniprot/SWISSPROT;Acc:O00189]
18.4594 -22.18 7.05931e-05 400 6 1 6 [+] picture button
DEF6 SINFRUT00000154292 differentially expressed in FDCP 6 homolog [Source:RefSeq_peptide;Acc:NP_071330]
16.2453 -18.9 0.000123281 400 5 3 5 [+] picture button
ATP8B2 SINFRUT00000183107 Probable phospholipid-transporting ATPase ID (EC 3.6.3.1) (ATPase class I type 8B member 2). [Source:Uniprot/SWISSPROT;Acc:P98198]
16.9129 -22.14 0.000136473 400 3 2 3 [+] picture button
SINFRUT00000181927 Homolog of Homo sapiens "PREDICTED "similar to Cerebellar-degeneration-related antigen 1 (CDR34) [Source:IPI;Acc:IPI00397192]"
16.0228 -21.63 0.000137291 400 3 1 1 [+] picture button
SGCD SINFRUT00000151701 Delta-sarcoglycan (SG-delta) (35 kDa dystrophin-associated glycoprotein) (35DAG). [Source:Uniprot/SWISSPROT;Acc:Q92629]
16.1243 -16.94 0.000164293 400 3 1 3 [+] picture button
DR1 SINFRUT00000136643 TATA-binding protein-associated phosphoprotein (Down-regulator of transcription 1) (Dr1 protein) (Negative cofactor 2 beta) (NC2 beta). [Source:Uniprot/SWISSPROT;Acc:Q01658]
17.9144 -19.83 0.000193729 400 7 2 8 [+] picture button
SNX25 SINFRUT00000130013 Sorting nexin-25. [Source:Uniprot/SWISSPROT;Acc:Q9H3E2]
16.0228 -17.73 0.000244455 400 4 2 5 [+] picture button
C1orf165 SINFRUT00000129720 Coiled-coil domain-containg protein C1orf165. [Source:Uniprot/SWISSPROT;Acc:Q7L4P6]
17.4888 -19.75 0.000245168 400 6 2 7 [+] picture button
SINFRUT00000144224 Homolog of Homo sapiens "syntaxin 16 (STX16), transcript variant 3, mRNA [Source:RefSeq_dna;Acc:NM_001001434]"
16.8017 -17.81 0.000246992 400 6 2 6 [+] picture button
CA14 SINFRUT00000130537 Carbonic anhydrase 14 precursor (EC 4.2.1.1) (Carbonic anhydrase XIV) (Carbonate dehydratase XIV) (CA-XIV). [Source:Uniprot/SWISSPROT;Acc:Q9ULX7]
16.4679 -18 0.000253317 400 5 2 7 [+] picture button
FDXR SINFRUT00000145222 NADPH:adrenodoxin oxidoreductase, mitochondrial precursor (EC 1.18.1.2) (Adrenodoxin reductase) (AR) (Ferredoxin reductase) (Ferredoxin--NADP(+) reductase). [Source:Uniprot/SWISSPROT;Acc:P22570]
18.5068 -21.67 0.000262965 400 4 4 9 [+] picture button
DDHD1 SINFRUT00000149473 Probable phospholipase DDHD1 (EC 3.1.1.-) (DDHD domain protein 1) (Phosphatidic acid-preferring phospholipase A1 homolog) (PA-PLA1). [Source:Uniprot/SWISSPROT;Acc:Q8NEL9]
17.3971 -22.51 0.000264802 400 4 6 5 [+] picture button
SGK2 SINFRUT00000158004 Serine/threonine-protein kinase Sgk2 (EC 2.7.11.1) (Serum/glucocorticoid-regulated kinase 2). [Source:Uniprot/SWISSPROT;Acc:Q9HBY8]
17.6659 -23.92 0.000265443 400 2 2 3 [+] picture button
Q8AX93_FUGRU SINFRUT00000144183 Sorting nexin 13. [Source:Uniprot/SPTREMBL;Acc:Q8AX93]
16.4217 -18.51 0.00028463 400 7 3 11 [+] picture button
SSBP3 SINFRUT00000144457 Single-stranded DNA-binding protein 3 (Sequence-specific single- stranded-DNA-binding protein). [Source:Uniprot/SWISSPROT;Acc:Q9BWW4]
17.575 -24.59 0.000344953 400 4 4 4 [+] picture button
RGL3 SINFRUT00000164990 ral guanine nucleotide dissociation stimulator-like 3 [Source:RefSeq_peptide;Acc:NP_001030300]
16.8017 -16.8 0.000346578 400 1 1 2 [+] picture button
SINFRUT00000174728 Homolog of Homo sapiens "TBC1 domain family, member 20 (TBC1D20), mRNA [Source:RefSeq_dna;Acc:NM_144628]"
16.3227 -16.06 0.000364976 400 6 2 9 [+] picture button
PECI SINFRUT00000127993 Peroxisomal 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) (Dodecenoyl-CoA isomerase) (Delta(3),delta(2)-enoyl-CoA isomerase) (D3,D2-enoyl-CoA isomerase) (DBI-related protein 1) (DRS-1) (Hepatocellular carcinoma- associated antigen 88) (Renal carcinoma antige [Source:Uniprot/SWISSPROT;Acc:O75521]
16.6904 -14.39 0.000385605 400 4 2 4 [+] picture button
USP18 SINFRUT00000180032 Ubl carboxyl-terminal hydrolase 18 (EC 3.1.2.-) (Ubl thioesterase 18) (ISG15-specific-processing protease) (43 kDa ISG15-specific protease) (hUBP43). [Source:Uniprot/SWISSPROT;Acc:Q9UMW8]
17.8031 -25.32 0.000395878 400 4 2 11 [+] picture button
NMBR SINFRUT00000150118 Neuromedin-B receptor (NMB-R) (Neuromedin-B-preferring bombesin receptor). [Source:Uniprot/SWISSPROT;Acc:P28336]
17.8031 -23.84 0.000395878 400 6 1 8 [+] picture button
WDR36 SINFRUT00000166108 WD repeat protein 36 (T-cell activation WD repeat-containing protein) (TA-WDRP). [Source:Uniprot/SWISSPROT;Acc:Q8NI36]
16.2901 -16.8 0.000396009 400 2 1 2 [+] picture button
CRLS1 SINFRUT00000178628 Cardiolipin synthetase (EC 2.7.8.-) (Cardiolipin synthase) (CLS) (Protein GCD10 homolog). [Source:Uniprot/SWISSPROT;Acc:Q9UJA2]
17.1351 -22.24 0.000396852 400 5 2 7 [+] picture button
SINFRUT00000128819 hypothetical protein LOC751667 [Source:RefSeq_peptide;Acc:NP_001038849]hypothetical protein LOC751667 [Source:RefSeq_peptide;Acc:NP_001038849] BY ORTHOLOGY TO:ENSDART00000104999
16.3981 -16.18 0.000397233 400 4 2 6 [+] picture button
TSKU SINFRUT00000163671 Tsukushi precursor (Leucine-rich repeat-containing protein 54) (E2- induced gene 4 protein). [Source:Uniprot/SWISSPROT;Acc:Q8WUA8]
16.8975 -14.92 0.000398276 400 7 1 8 [+] picture button
EP400 SINFRUT00000128848 E1A-binding protein p400 (EC 3.6.1.-) (p400 kDa SWI2/SNF2-related protein) (Domino homolog) (hDomino) (CAG repeat protein 32) (Trinucleotide repeat-containing gene 12 protein). [Source:Uniprot/SWISSPROT;Acc:Q96L91]
16.9511 -20.63 0.000439404 400 8 3 10 [+] picture button
AMDHD2 SINFRUT00000132086 amidohydrolase domain containing 2 [Source:RefSeq_peptide;Acc:NP_057028]
16.2453 -15.57 0.000442844 400 5 1 5 [+] picture button
CAD SINFRUT00000183190 CAD protein [Includes: Glutamine-dependent carbamoyl-phosphate synthase (EC 6.3.5.5); Aspartate carbamoyltransferase (EC 2.1.3.2); Dihydroorotase (EC 3.5.2.3)]. [Source:Uniprot/SWISSPROT;Acc:P27708]
16.2453 -18.95 0.000450078 400 7 2 8 [+] picture button
Q642Y3_FUGRU SINFRUT00000158617 FrRUNX1. [Source:Uniprot/SPTREMBL;Acc:Q642Y3]
16.9129 -18.23 0.000468591 400 7 1 7 [+] picture button
IHPK1 SINFRUT00000181358 Inositol hexaphosphate kinase 1 (EC 2.7.4.21) (InsP6 kinase 1) (Inositol hexakisphosphate kinase 1). [Source:Uniprot/SWISSPROT;Acc:Q92551]
17.1355 -22.98 0.000483905 400 2 1 3 [+] picture button
TNN SINFRUT00000166524 Tenascin-N precursor (TN-N). [Source:Uniprot/SWISSPROT;Acc:Q9UQP3]
16.5791 -22.31 0.000499844 400 5 2 11 [+] picture button
SINFRUT00000181787 Homolog of Gallus gallus "Parvalbumin, thymic (Avian thymic hormone) (ATH) (Thymus-specific antigen T1). [Source:Uniprot/SWISSPROT;Acc:P19753]"
18.0892 -21.96 0.000519921 400 4 2 4 [+] picture button
ARG1 SINFRUT00000148803 Arginase-1 (EC 3.5.3.1) (Type I arginase) (Liver-type arginase). [Source:Uniprot/SWISSPROT;Acc:P05089]
16.5791 -16.4 0.000561311 400 8 2 12 [+] picture button
KIAA1033 SINFRUT00000148715 Uncharacterized protein KIAA1033. [Source:Uniprot/SWISSPROT;Acc:Q2M389]
16.3566 -17.62 0.000570757 400 3 2 4 [+] picture button
TNFAIP1 SINFRUT00000158132 BTB/POZ domain-containing protein TNFAIP1 (Tumor necrosis factor, alpha-induced protein 1, endothelial) (Protein B12). [Source:Uniprot/SWISSPROT;Acc:Q13829]
17.2468 -22.29 0.000572025 400 4 1 5 [+] picture button
KL SINFRUT00000140554 Klotho precursor (EC 3.2.1.31) [Contains: Klotho peptide]. [Source:Uniprot/SWISSPROT;Acc:Q9UEF7]
16.1341 -22.77 0.000583618 400 6 1 6 [+] picture button
ACSL6 SINFRUT00000183174 Long-chain-fatty-acid--CoA ligase 6 (EC 6.2.1.3) (Long-chain acyl-CoA synthetase 6) (LACS 6). [Source:Uniprot/SWISSPROT;Acc:Q9UKU0]
16.1341 -23.32 0.000583618 400 3 1 4 [+] picture button

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Download table: GFF TXT
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