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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Takifugu rubripes and fru-miR-140

743 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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LMX1B SINFRUT00000165549 LIM homeobox transcription factor 1 beta (LIM/homeobox protein LMX1B) (LIM/homeobox protein 1.2) (LMX-1.2). [Source:Uniprot/SWISSPROT;Acc:O60663]
18.0458 -14.08 0.000000752725 400 3 4 4 [+] picture button
TRIP10 (2 of 2) SINFRUT00000178814 Cdc42-interacting protein 4 (Thyroid receptor-interacting protein 10) (TRIP-10) (Protein Felic) (Salt-tolerant protein) (hSTP). [Source:Uniprot/SWISSPROT;Acc:Q15642]
17.354 -15.98 0.00000159042 400 10 3 12 [+] picture button
ERBB2IP SINFRUT00000139058 Protein LAP2 (Erbb2-interacting protein) (Erbin) (Densin-180-like protein). [Source:Uniprot/SWISSPROT;Acc:Q96RT1]
17.5062 -19.1 0.00000296188 400 6 6 10 [+] picture button
RAB21 SINFRUT00000152565 Ras-related protein Rab-21. [Source:Uniprot/SWISSPROT;Acc:Q9UL25]
16.8726 -15.83 0.00000491785 400 6 3 11 [+] picture button
FGF8 (2 of 2) SINFRUT00000132521 Fibroblast growth factor 8 precursor (FGF-8) (HBGF-8) (Androgen- induced growth factor) (AIGF). [Source:Uniprot/SWISSPROT;Acc:P55075]
16.8456 -24.32 0.00000507526 400 8 3 7 [+] picture button
MGAT3 SINFRUT00000155668 Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase (EC 2.4.1.144) (N-glycosyl-oligosaccharide-glycoprotein N- acetylglucosaminyltransferase III) (N-acetylglucosaminyltransferase III) (GNT-III) (GlcNAc-T III). [Source:Uniprot/SWISSPROT;Acc:Q09327]
18.0567 -16.29 0.00000970296 400 5 4 6 [+] picture button
LENG1 SINFRUT00000170112 Leukocyte receptor cluster member 1. [Source:Uniprot/SWISSPROT;Acc:Q96BZ8]
16.2721 -21.9 0.0000141166 400 4 1 6 [+] picture button
NAT5 SINFRUT00000161447 N-acetyltransferase 5 (EC 2.3.1.-). [Source:Uniprot/SWISSPROT;Acc:P61599]
16.7794 -25.2 0.0000154932 400 4 2 5 [+] picture button
SINFRUT00000131394 cDNA sequence BC002216 [Source:MarkerSymbol;Acc:MGI:1933107]cDNA sequence BC002216 [Source:MarkerSymbol;Acc:MGI:1933107] BY ORTHOLOGY TO:ENSMUST00000030950
17.9466 -19.35 0.0000172721 400 5 1 9 [+] picture button
SLC24A3 (2 of 2) SINFRUT00000172731 Sodium/potassium/calcium exchanger 3 precursor (Na(+)/K(+)/Ca(2+)- exchange protein 3) (Solute carrier family 24 member 3). [Source:Uniprot/SWISSPROT;Acc:Q9HC58]
16.185 -14.12 0.0000193945 400 7 1 8 [+] picture button
LRRC33 SINFRUT00000173685 Leucine-rich repeat-containing protein 33 precursor. [Source:Uniprot/SWISSPROT;Acc:Q86YC3]
16.9418 -13.23 0.0000204414 400 6 2 8 [+] picture button
GRB14 SINFRUT00000133731 Growth factor receptor-bound protein 14 (GRB14 adapter protein). [Source:Uniprot/SWISSPROT;Acc:Q14449]
17.3961 -21.14 0.0000211414 400 5 2 9 [+] picture button
NP_001017964.1 SINFRUT00000182404 LOC150223 protein (LOC150223), mRNA [Source:RefSeq_dna;Acc:NM_001017964]
16.6624 -14.28 0.0000260162 400 6 1 6 [+] picture button
MAP1LC3C SINFRUT00000143479 Microtubule-associated proteins 1A/1B light chain 3C precursor (Microtubule-associated protein 1 light chain 3 gamma) (MAP1A/MAP1B LC3 C) (MAP1A/1B light chain 3 C) (MAP1 light chain 3-like protein 3) (Autophagy-related protein LC3 C) (Autophagy-related u [Source:Uniprot/SWISSPROT;Acc:Q9BXW4]
16.8456 -18.3 0.0000279832 400 6 2 7 [+] picture button
SAR1A SINFRUT00000152512 GTP-binding protein SAR1a (COPII-associated small GTPase). [Source:Uniprot/SWISSPROT;Acc:Q9NR31]
16.2674 -13.94 0.0000294872 400 4 2 8 [+] picture button
EMILIN1 (1 of 2) SINFRUT00000127428 EMILIN-1 precursor (Elastin microfibril interface-located protein 1) (Elastin microfibril interfacer 1). [Source:Uniprot/SWISSPROT;Acc:Q9Y6C2]
17.0658 -18.43 0.0000297018 400 3 2 4 [+] picture button
PTP4A3 SINFRUT00000143234 Protein tyrosine phosphatase type IVA protein 3 (EC 3.1.3.48) (Protein-tyrosine phosphatase 4a3) (Protein-tyrosine phosphatase of regenerating liver 3) (PRL-3) (PRL-R). [Source:Uniprot/SWISSPROT;Acc:O75365]
16.1459 -14.47 0.000031079 400 4 2 6 [+] picture button
PBX4 SINFRUT00000150643 Pre-B-cell leukemia transcription factor 4 (Homeobox protein PBX4). [Source:Uniprot/SWISSPROT;Acc:Q9BYU1]
17.0658 -16.68 0.0000319976 400 7 2 9 [+] picture button
RNF7 SINFRUT00000153786 RING-box protein 2 (Rbx2) (RING finger protein 7) (Regulator of cullins 2) (CKII beta-binding protein 1) (CKBBP1) (Sensitive to apoptosis gene protein). [Source:Uniprot/SWISSPROT;Acc:Q9UBF6]
16.7355 -16.9 0.000032279 400 6 3 6 [+] picture button
C10orf76 SINFRUT00000181763 Uncharacterized protein C10orf76. [Source:Uniprot/SWISSPROT;Acc:Q5T2E6]
16.9863 -15.19 0.0000595371 400 3 2 3 [+] picture button
RCN3 SINFRUT00000140170 Reticulocalbin-3 precursor (EF-hand calcium-binding protein RLP49). [Source:Uniprot/SWISSPROT;Acc:Q96D15]
16.2951 -17.49 0.0000610004 400 12 2 20 [+] picture button
TDO2 SINFRUT00000132750 Tryptophan 2,3-dioxygenase (EC 1.13.11.11) (TO) (Tryptophan pyrrolase) (Tryptophanase) (Tryptophan oxygenase) (Tryptamin 2,3-dioxygenase) (TRPO). [Source:Uniprot/SWISSPROT;Acc:P48775]
17.286 -16.28 0.0000654935 400 5 1 5 [+] picture button
EXTL3 SINFRUT00000164462 Exostosin-like 3 (EC 2.4.1.223) (Glucuronyl-galactosyl-proteoglycan 4- alpha-N-acetylglucosaminyltransferase) (Putative tumor suppressor protein EXTL3) (Multiple exostosis-like protein 3) (Hereditary multiple exostoses gene isolog) (EXT-related protein 1) [Source:Uniprot/SWISSPROT;Acc:O43909]
17.1281 -19.08 0.000066985 400 4 3 6 [+] picture button
ELL2 SINFRUT00000167886 RNA polymerase II elongation factor ELL2. [Source:Uniprot/SWISSPROT;Acc:O00472]
17.2785 -21.49 0.0000696786 400 4 3 6 [+] picture button
ADA SINFRUT00000132497 Adenosine deaminase (EC 3.5.4.4) (Adenosine aminohydrolase). [Source:Uniprot/SWISSPROT;Acc:P00813]
19.1577 -26.63 0.000074951 400 8 5 10 [+] picture button
MPP3 (2 of 2) SINFRUT00000145053 MAGUK p55 subfamily member 3 (Protein MPP3) (Discs large homolog 3). [Source:Uniprot/SWISSPROT;Acc:Q13368]
16.8456 -21.4 0.0000800707 400 11 2 12 [+] picture button
IDH1 SINFRUT00000128662 Isocitrate dehydrogenase [NADP] cytoplasmic (EC 1.1.1.42) (Cytosolic NADP-isocitrate dehydrogenase) (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP). [Source:Uniprot/SWISSPROT;Acc:O75874]
16.6254 -16.09 0.0000810338 400 7 2 14 [+] picture button
SINFRUT00000157724 Homolog of Homo sapiens "Steroid receptor RNA activator isoform 1 [Source:IPI;Acc:IPI00479044]"
17.1759 -24.97 0.0000810812 400 7 3 9 [+] picture button
ADORA2B SINFRUT00000154463 Adenosine A2b receptor. [Source:Uniprot/SWISSPROT;Acc:P29275]
16.6624 -14.8 0.0000816144 400 7 4 11 [+] picture button
SINFRUT00000137978 Homolog of Homo sapiens "MGC99813 protein [Source:IPI;Acc:IPI00164776]"
16.7918 -16.97 0.0000840765 400 6 4 8 [+] picture button
SINFRUT00000176994 Homolog of Homo sapiens "Guanine nucleotide-binding protein, alpha-13 subunit [Source:IPI;Acc:IPI00290928]"
17.42 -17.18 0.0000848219 400 5 3 9 [+] picture button
NT5C3L (1 of 2) SINFRUT00000141234 5'-nucleotidase, cytosolic III-like [Source:RefSeq_peptide;Acc:NP_443167]
18.387 -16.94 0.0000866793 400 4 1 5 [+] picture button
SINFRUT00000161478 Homolog of Brachydanio rerio "Beta-3-galactosyltransferase. [Source:Uniprot/SPTREMBL;Acc:Q6DHV1]"
17.4101 -13.28 0.0000942327 400 4 2 4 [+] picture button
REEP1 SINFRUT00000132146 Receptor expression-enhancing protein 1. [Source:Uniprot/SWISSPROT;Acc:Q9H902]
17.1759 -21.88 0.0000991643 400 4 1 5 [+] picture button
SINFRUT00000158964 Homolog of Homo sapiens "CRB1 isoform II precursor [Source:IPI;Acc:IPI00397504]"
17.3961 -23.62 0.000116259 400 5 2 7 [+] picture button
B4GALT4 SINFRUT00000159423 Beta-1,4-galactosyltransferase 4 (EC 2.4.1.-) (Beta-1,4-GalTase 4) (Beta4Gal-T4) (b4Gal-T4) (UDP-galactose:beta-N-acetylglucosamine beta- 1,4-galactosyltransferase 4) (UDP-Gal:beta-GlcNAc beta-1,4- galactosyltransferase 4) [Includes: N-acetyllactosamine s [Source:Uniprot/SWISSPROT;Acc:O60513]
16.7918 -17.75 0.000130675 400 7 3 12 [+] picture button
PDLIM1 SINFRUT00000177770 PDZ and LIM domain protein 1 (Elfin) (LIM domain protein CLP-36) (C- terminal LIM domain protein 1). [Source:Uniprot/SWISSPROT;Acc:O00151]
16.2951 -13.17 0.000130937 400 3 1 4 [+] picture button
ESD SINFRUT00000183296 S-formylglutathione hydrolase (EC 3.1.2.12) (FGH) (Esterase D). [Source:Uniprot/SWISSPROT;Acc:P10768]
16.185 -20.29 0.000134232 400 3 1 3 [+] picture button
ITGA5 (2 of 2) SINFRUT00000170409 Integrin alpha-5 precursor (Fibronectin receptor subunit alpha) (Integrin alpha-F) (VLA-5) (CD49e antigen) [Contains: Integrin alpha-5 heavy chain; Integrin alpha-5 light chain]. [Source:Uniprot/SWISSPROT;Acc:P08648]
16.5773 -20.89 0.000135853 400 6 4 10 [+] picture button
LMNB1 SINFRUT00000152894 Lamin-B1. [Source:Uniprot/SWISSPROT;Acc:P20700]
16.6956 -18.58 0.000135902 400 7 4 11 [+] picture button
AP2S1 SINFRUT00000130860 AP-2 complex subunit sigma-1 (Adapter-related protein complex 2 sigma- 1 subunit) (Clathrin coat assembly protein AP17) (Clathrin coat- associated protein AP17) (Plasma membrane adaptor AP-2 17 kDa protein) (HA2 17 kDa subunit) (Clathrin assembly protein [Source:Uniprot/SWISSPROT;Acc:P53680]
19.0285 -24.17 0.00014273 400 5 2 6 [+] picture button
ESRRA SINFRUT00000138848 Steroid hormone receptor ERR1 (Estrogen-related receptor, alpha) (ERR- alpha) (Estrogen receptor-like 1). [Source:Uniprot/SWISSPROT;Acc:P11474]
16.5153 -17.27 0.000144302 400 5 4 5 [+] picture button
C11orf67 SINFRUT00000162457 UPF0366 protein C11orf67. [Source:Uniprot/SWISSPROT;Acc:Q9H7C9]
16.7345 -17.22 0.00015272 400 1 1 1 [+] picture button
KIF1B SINFRUT00000146057 Kinesin-like protein KIF1B (Klp). [Source:Uniprot/SWISSPROT;Acc:O60333]
16.3749 -14.27 0.000153391 400 5 4 5 [+] picture button
PDE7A SINFRUT00000155216 High-affinity cAMP-specific 3',5'-cyclic phosphodiesterase 7A (EC 3.1.4.17) (HCP1) (TM22). [Source:Uniprot/SWISSPROT;Acc:Q13946]
18.6028 -19.32 0.000158216 400 8 3 12 [+] picture button
FGFR3 SINFRUT00000174329 Fibroblast growth factor receptor 3 precursor (EC 2.7.10.1) (FGFR-3) (CD333 antigen). [Source:Uniprot/SWISSPROT;Acc:P22607]
17.5206 -19.53 0.000158822 400 7 5 9 [+] picture button
YWHAG (1 of 2) SINFRUT00000181173 14-3-3 protein gamma (Protein kinase C inhibitor protein 1) (KCIP-1). [Source:Uniprot/SWISSPROT;Acc:P61981]
18.3861 -18.31 0.000168954 400 7 8 9 [+] picture button
ECE1 SINFRUT00000136873 Endothelin-converting enzyme 1 (EC 3.4.24.71) (ECE-1). [Source:Uniprot/SWISSPROT;Acc:P42892]
16.7355 -20.7 0.000169253 400 5 4 5 [+] picture button
GFM2 SINFRUT00000155315 Elongation factor G 2, mitochondrial precursor (mEF-G 2) (Elongation factor G2). [Source:Uniprot/SWISSPROT;Acc:Q969S9]
17.286 -18.82 0.000203824 400 5 1 7 [+] picture button
PTCD3 SINFRUT00000157443 Pentatricopeptide repeat domain 3 [Source:RefSeq_peptide;Acc:NP_060422]
16.6254 -15.77 0.000205225 400 7 2 9 [+] picture button

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Download table: GFF TXT
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