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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Takifugu rubripes and fru-miR-138

661 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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RQCD1 SINFRUT00000177466 RCD1 required for cell differentiation1 homolog [Source:RefSeq_peptide;Acc:NP_005435]
16.7355 -20.71 3.58632e-09 400 9 2 11 [+] picture button
SINFRUT00000150543 Homolog of Brachydanio rerio "Protocadherin. [Source:Uniprot/SPTREMBL;Acc:Q8AXB7]"
18.0788 -22.81 1e-06 400 3 1 1 [+] picture button
MEGF11 (2 of 2) SINFRUT00000137187 MEGF11 protein [Source:RefSeq_peptide;Acc:NP_115821]
16.7195 -17.96 1.1588e-06 400 1 1 1 [+] picture button
C22orf9 SINFRUT00000145204 Uncharacterized protein C22orf9. [Source:Uniprot/SWISSPROT;Acc:Q6ICG6]
16.6254 -21.13 3.28238e-06 400 4 2 6 [+] picture button
NUP188 SINFRUT00000181701 nucleoporin 188kDa [Source:RefSeq_peptide;Acc:NP_056169]
16.451 -19.99 8.2029e-06 400 6 3 11 [+] picture button
BEST2 SINFRUT00000151123 Bestrophin-2 (Vitelliform macular dystrophy 2-like protein 1). [Source:Uniprot/SWISSPROT;Acc:Q8NFU1]
16.6254 -18.59 1.15171e-05 400 4 2 7 [+] picture button
DPYSL5 (2 of 2) SINFRUT00000140077 Dihydropyrimidinase-related protein 5 (DRP-5) (ULIP6 protein) (Collapsin response mediator protein 5) (CRMP-5) (CRMP3-associated molecule) (CRAM). [Source:Uniprot/SWISSPROT;Acc:Q9BPU6]
17.6163 -25.78 1.18618e-05 400 6 1 8 [+] picture button
TSPAN11 SINFRUT00000147243 tetraspanin 11 [Source:RefSeq_peptide;Acc:NP_001073978]
17.0658 -20.35 1.35365e-05 400 6 1 7 [+] picture button
PHYHD1 SINFRUT00000128555 phytanoyl-CoA dioxygenase domain containing 1 [Source:RefSeq_peptide;Acc:NP_777593]
17.7659 -19.89 1.65827e-05 400 5 2 7 [+] picture button
SMARCD3 SINFRUT00000142552 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 (60 kDa BRG-1/Brm-associated factor subunit C) (BRG1-associated factor 60C). [Source:Uniprot/SWISSPROT;Acc:Q6STE5]
18.2383 -17.99 2.33741e-05 400 6 4 7 [+] picture button
UNK SINFRUT00000151538 Zinc finger CCCH domain-containing protein 5. [Source:Uniprot/SWISSPROT;Acc:Q9C0B0]
18.2769 -29.37 2.81475e-05 400 7 3 9 [+] picture button
LSM14A SINFRUT00000145983 LSM14 protein homolog A (Protein SCD6 homolog) (Protein FAM61A) (Putative alpha synuclein-binding protein) (AlphaSNBP). [Source:Uniprot/SWISSPROT;Acc:Q8ND56]
17.0658 -15 3.38394e-05 400 4 5 4 [+] picture button
C6orf47 SINFRUT00000178684 Uncharacterized protein C6orf47 (Protein G4). [Source:Uniprot/SWISSPROT;Acc:O95873]
17.3961 -19.74 3.60869e-05 400 5 1 8 [+] picture button
SINFRUT00000182046 NOT ANNOTATED
17.7377 -21.64 4.32307e-05 400 5 1 2 [+] picture button
MAP2K2 SINFRUT00000138049 Dual specificity mitogen-activated protein kinase kinase 2 (EC 2.7.12.2) (MAP kinase kinase 2) (MAPKK 2) (ERK activator kinase 2) (MAPK/ERK kinase 2) (MEK2). [Source:Uniprot/SWISSPROT;Acc:P36507]
16.9363 -16.37 4.44552e-05 400 9 3 13 [+] picture button
SCAMP2 (2 of 2) SINFRUT00000129041 Secretory carrier-associated membrane protein 2 (Secretory carrier membrane protein 2). [Source:Uniprot/SWISSPROT;Acc:O15127]
16.7149 -24.01 4.7079e-05 400 7 2 9 [+] picture button
PLA2G7 SINFRUT00000182184 Platelet-activating factor acetylhydrolase precursor (EC 3.1.1.47) (PAF acetylhydrolase) (PAF 2-acylhydrolase) (LDL-associated phospholipase A2) (LDL-PLA(2)) (2-acetyl-1-alkylglycerophosphocholine esterase) (1-alkyl-2-acetylglycerophosphocholine esterase) [Source:Uniprot/SWISSPROT;Acc:Q13093]
16.7345 -19.48 5.54127e-05 400 7 2 9 [+] picture button
B4GALT3 SINFRUT00000148278 Beta-1,4-galactosyltransferase 3 (EC 2.4.1.-) (Beta-1,4-GalTase 3) (Beta4Gal-T3) (b4Gal-T3) (UDP-galactose:beta-N-acetylglucosamine beta- 1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc beta-1,4- galactosyltransferase 3) [Includes: N-acetyllactosamine s [Source:Uniprot/SWISSPROT;Acc:O60512]
17.7264 -19.98 6.89006e-05 400 4 4 3 [+] picture button
C20orf149 SINFRUT00000130281 UPF0362 protein C20orf149. [Source:Uniprot/SWISSPROT;Acc:Q9H3Y8]
17.9326 -26.91 7.58896e-05 400 6 2 7 [+] picture button
SMOC1 (2 of 2) SINFRUT00000162000 SPARC-related modular calcium-binding protein 1 precursor (Secreted modular calcium-binding protein 1) (SMOC-1). [Source:Uniprot/SWISSPROT;Acc:Q9H4F8]
16.6254 -21.46 8.8116e-05 400 4 1 5 [+] picture button
TMOD4 SINFRUT00000149822 Tropomodulin-4 (Skeletal muscle tropomodulin) (Sk-Tmod). [Source:Uniprot/SWISSPROT;Acc:Q9NZQ9]
17.0658 -23.97 9.17066e-05 400 5 2 7 [+] picture button
AFF4 SINFRUT00000162288 AF4/FMR2 family member 4 (ALL1-fused gene from chromosome 5q31) (Major CDK9 elongation factor-associated protein). [Source:Uniprot/SWISSPROT;Acc:Q9UHB7]
19.2678 -22.47 9.18492e-05 400 5 3 8 [+] picture button
CXorf57 SINFRUT00000127263 Uncharacterized protein CXorf57. [Source:Uniprot/SWISSPROT;Acc:Q6NSI4]
16.8281 -19.59 9.36525e-05 400 7 1 9 [+] picture button
FAM57A (2 of 2) SINFRUT00000144660 Protein FAM57A (CT120 protein). [Source:Uniprot/SWISSPROT;Acc:Q8TBR7]
17.5502 -23.2 9.63193e-05 400 7 3 11 [+] picture button
PSD (2 of 2) SINFRUT00000160510 pleckstrin and Sec7 domain containing [Source:RefSeq_peptide;Acc:NP_002770]
17.6163 -20.95 0.000102731 400 2 1 3 [+] picture button
OFD1 SINFRUT00000134932 Oral-facial-digital syndrome 1 protein (Protein 71-7A). [Source:Uniprot/SWISSPROT;Acc:O75665]
17.6367 -25.09 0.000108139 400 7 3 9 [+] picture button
SLC16A2 SINFRUT00000142054 Monocarboxylate transporter 8 (MCT 8) (MCT 7) (Solute carrier family 16 member 2) (X-linked PEST-containing transporter). [Source:Uniprot/SWISSPROT;Acc:P36021]
17.7264 -21.92 0.000112064 400 5 3 7 [+] picture button
SINFRUT00000180288 NOT ANNOTATED
17.1759 -18.52 0.00012017 400 3 1 1 [+] picture button
ACSS2 SINFRUT00000177814 Acetyl-coenzyme A synthetase, cytoplasmic (EC 6.2.1.1) (Acetate--CoA ligase) (Acyl-activating enzyme) (Acetyl-CoA synthetase) (ACS) (AceCS) (Acyl-CoA synthetase short-chain family member 2). [Source:Uniprot/SWISSPROT;Acc:Q9NR19]
17.0658 -19.12 0.00012017 400 3 1 2 [+] picture button
CAMK1D SINFRUT00000148711 Calcium/calmodulin-dependent protein kinase type 1D (EC 2.7.11.17) (CaM kinase ID) (CaM kinase I delta) (CaMKI-delta) (CaM-KI delta) (CaMKI delta) (Camk1D) (CamKI-like protein kinase) (CKLiK). [Source:Uniprot/SWISSPROT;Acc:Q8IU85]
18.0567 -25.48 0.00012017 400 5 1 4 [+] picture button
SPATA18 SINFRUT00000130571 Spermatogenesis-associated protein 18. [Source:Uniprot/SWISSPROT;Acc:Q8TC71]
16.4651 -22.55 0.00012145 400 4 2 4 [+] picture button
C14orf130 (1 of 2) SINFRUT00000146308 Uncharacterized protein C14orf130. [Source:Uniprot/SWISSPROT;Acc:Q8N806]
18.2769 -21.38 0.000131132 400 3 2 3 [+] picture button
FGF14 SINFRUT00000177034 Fibroblast growth factor 14 (FGF-14) (Fibroblast growth factor homologous factor 4) (FHF-4). [Source:Uniprot/SWISSPROT;Acc:Q92915]
16.5153 -20.54 0.000140921 400 4 4 4 [+] picture button
USP10 SINFRUT00000182829 Ubiquitin carboxyl-terminal hydrolase 10 (EC 3.1.2.15) (Ubiquitin thioesterase 10) (Ubiquitin-specific-processing protease 10) (Deubiquitinating enzyme 10). [Source:Uniprot/SWISSPROT;Acc:Q14694]
16.666 -22.62 0.000159541 400 4 4 6 [+] picture button
TMEM42 SINFRUT00000179847 Transmembrane protein 42. [Source:Uniprot/SWISSPROT;Acc:Q69YG0]
17.286 -22.92 0.000162534 400 8 2 7 [+] picture button
SINFRUT00000182073 Homolog of Brachydanio rerio "Actin-binding vascular maintenance protein. [Source:Uniprot/SPTREMBL;Acc:Q76C07]"
19.852 -29.27 0.000166219 400 7 3 9 [+] picture button
UHRF2 SINFRUT00000155873 E3 ubiquitin-protein ligase UHRF2 (EC 6.3.2.-) (Ubiquitin-like PHD and RING finger domain-containing protein 2) (Ubiquitin-like-containing PHD and RING finger domains protein 2) (Np95/ICBP90-like RING finger protein) (Np95-like RING finger protein) (Nucle [Source:Uniprot/SWISSPROT;Acc:Q96PU4]
18.1668 -17.53 0.000171342 400 4 4 5 [+] picture button
SINFRUT00000148947 hypothetical protein LOC405880 [Source:RefSeq_peptide;Acc:NP_998109]hypothetical protein LOC405880 [Source:RefSeq_peptide;Acc:NP_998109] BY ORTHOLOGY TO:ENSDART00000050824
16.8456 -21.59 0.000195561 400 4 2 5 [+] picture button
PAX5 SINFRUT00000156297 Paired box protein Pax-5 (B-cell-specific transcription factor) (BSAP). [Source:Uniprot/SWISSPROT;Acc:Q02548]
17.9917 -21.65 0.000204573 400 6 2 6 [+] picture button
DIP2B (2 of 2) SINFRUT00000174216 DIP2 disco-interacting protein 2 homolog B [Source:RefSeq_peptide;Acc:NP_775873]
16.6624 -16.69 0.000204678 400 7 4 12 [+] picture button
SINFRUT00000131671 Homolog of Homo sapiens "Msx2-interacting protein [Source:IPI;Acc:IPI00045914]"
17.371 -19.41 0.000209795 400 6 4 6 [+] picture button
Q5NU13_FUGRU SINFRUT00000127086 Makorin RING finger protein 2. [Source:Uniprot/SPTREMBL;Acc:Q5NU13]
18.4971 -21.77 0.000213067 400 4 1 6 [+] picture button
MRPL24 SINFRUT00000135626 39S ribosomal protein L24, mitochondrial precursor (L24mt) (MRP-L24). [Source:Uniprot/SWISSPROT;Acc:Q96A35]
16.9983 -22.52 0.000216023 400 4 1 5 [+] picture button
ANKRD22 SINFRUT00000162482 Ankyrin repeat domain-containing protein 22. [Source:Uniprot/SWISSPROT;Acc:Q5VYY1]
17.1759 -28.22 0.000276282 400 6 3 10 [+] picture button
XKR4 SINFRUT00000131753 XK-related protein 4. [Source:Uniprot/SWISSPROT;Acc:Q5GH76]
16.6139 -18.79 0.000310545 400 6 3 8 [+] picture button
XRCC6BP1 SINFRUT00000164656 Ku70-binding protein 3 [Source:RefSeq_peptide;Acc:NP_150592]
16.9557 -27.34 0.000312651 400 6 1 6 [+] picture button
PPP4R1L SINFRUT00000134986 Serine/threonine-protein phosphatase 4 regulatory subunit 1-like. [Source:Uniprot/SWISSPROT;Acc:Q9P1A2]
16.8354 -18.25 0.000318217 400 4 2 7 [+] picture button
ENPP3 SINFRUT00000182235 Ectonucleotide pyrophosphatase/phosphodiesterase family member 3 (E- NPP 3) (Phosphodiesterase I/nucleotide pyrophosphatase 3) (Phosphodiesterase I beta) (PD-Ibeta) (CD203c antigen) [Includes: Alkaline phosphodiesterase I (EC 3.1.4.1); Nucleotide pyrophos [Source:Uniprot/SWISSPROT;Acc:O14638]
18.6072 -20.28 0.000329956 400 6 2 8 [+] picture button
AOF1 SINFRUT00000146468 Flavin-containing amine oxidase domain-containing protein 1 (EC 1.-.-.-). [Source:Uniprot/SWISSPROT;Acc:Q8NB78]
16.8456 -15.85 0.000342698 400 8 1 12 [+] picture button
NP_444273.1 SINFRUT00000154330 CG33932-PA, isoform A [Source:RefSeq_peptide;Acc:NP_001027079]CG33932-PA, isoform A [Source:RefSeq_peptide;Acc:NP_001027079] BY ORTHOLOGY TO:CG33932-RA
18.7964 -23.15 0.000352685 400 6 2 6 [+] picture button

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Download table: GFF TXT
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