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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Takifugu rubripes and fru-miR-10d

842 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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HOXA3 SINFRUT00000159071 Homeobox protein Hox-A3 (Hox-1E). [Source:Uniprot/SWISSPROT;Acc:O43365]
16.8432 -14.57 9.09035e-09 400 4 9 6 [+] picture button
RAP2A (2 of 2) SINFRUT00000179673 Ras-related protein Rap-2a precursor (RbBP-30). [Source:Uniprot/SWISSPROT;Acc:P10114]
16.5861 -28.28 3.45248e-08 400 7 6 13 [+] picture button
DAZAP1 SINFRUT00000177667 DAZ-associated protein 1 (Deleted in azoospermia-associated protein 1). [Source:Uniprot/SWISSPROT;Acc:Q96EP5]
15.2387 -17.16 2.81035e-07 400 4 2 5 [+] picture button
RNF122 SINFRUT00000162718 RING finger protein 122. [Source:Uniprot/SWISSPROT;Acc:Q9H9V4]
15.4533 -19.4 3.18784e-07 400 3 3 6 [+] picture button
HOXD10 SINFRUT00000172263 Homeobox protein Hox-D10 (Hox-4D) (Hox-4E). [Source:Uniprot/SWISSPROT;Acc:P28358]
17.4836 -16.4 7.2834e-07 400 3 1 3 [+] picture button
GRAP2 SINFRUT00000141999 GRB2-related adapter protein 2 (GADS protein) (Growth factor receptor- binding protein) (GRBLG) (Grf40 adapter protein) (Grf-40) (GRB-2-like protein) (GRB2L) (GRBX) (P38) (Hematopoietic cell-associated adapter protein GrpL) (Adapter protein GRID) (SH3-SH2 [Source:Uniprot/SWISSPROT;Acc:O75791]
16.6991 -23.66 9.24617e-07 400 1 1 1 [+] picture button
SINFRUT00000178860 Homolog of Brachydanio rerio "SnRNP-associated protein. [Source:Uniprot/SPTREMBL;Acc:Q9I9E5]"
15.526 -20.07 1e-06 400 9 1 3 [+] picture button
Q8QGY7_FUGRU SINFRUT00000148004 Guanine nucleotide binding protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q8QGY7]
15.8517 -14.32 1.21181e-06 400 6 2 5 [+] picture button
NP_078880.1 SINFRUT00000171816 CDNA: FLJ21908 fis, clone HEP03830. [Source:Uniprot/SPTREMBL;Acc:Q9H6T3]
15.7432 -22.19 2.27578e-06 400 4 2 5 [+] picture button
DVL2 SINFRUT00000158842 Segment polarity protein dishevelled homolog DVL-2 (Dishevelled-2) (DSH homolog 2). [Source:Uniprot/SWISSPROT;Acc:O14641]
17.5889 -23.58 2.30842e-06 400 6 5 10 [+] picture button
GRIN2B (2 of 2) SINFRUT00000166181 Glutamate [NMDA] receptor subunit epsilon-2 precursor (N-methyl D- aspartate receptor subtype 2B) (NR2B) (NMDAR2B) (N-methyl-D-aspartate receptor subunit 3) (NR3) (hNR3). [Source:Uniprot/SWISSPROT;Acc:Q13224]
16.2221 -21.75 6.36988e-06 400 4 5 7 [+] picture button
SVOP SINFRUT00000176065 Synaptic vesicle 2-related protein (SV2-related protein). [Source:Uniprot/SWISSPROT;Acc:Q8N4V2]
15.4175 -17.72 6.56074e-06 400 4 2 4 [+] picture button
SINFRUT00000181962 Homolog of Sphoeroides nephelus "HoxD4b. [Source:Uniprot/SPTREMBL;Acc:Q6W987]"
16.8706 -18.65 7.28307e-06 400 2 3 1 [+] picture button
BPGM SINFRUT00000139469 Bisphosphoglycerate mutase (EC 5.4.2.4) (2,3-bisphosphoglycerate mutase, erythrocyte) (2,3-bisphosphoglycerate synthase) (BPGM) (EC 5.4.2.1) (EC 3.1.3.13) (BPG-dependent PGAM). [Source:Uniprot/SWISSPROT;Acc:P07738]
15.2337 -17.29 7.32399e-06 400 10 3 12 [+] picture button
CPN1 SINFRUT00000170286 Carboxypeptidase N catalytic chain precursor (EC 3.4.17.3) (CPN) (Carboxypeptidase N polypeptide 1) (Carboxypeptidase N small subunit) (Lysine carboxypeptidase) (Arginine carboxypeptidase) (Kininase-1) (Serum carboxypeptidase N) (SCPN) (Anaphylatoxin inac [Source:Uniprot/SWISSPROT;Acc:P15169]
16.5032 -15.08 7.52491e-06 400 6 2 8 [+] picture button
AADAT SINFRUT00000135224 Kynurenine/alpha-aminoadipate aminotransferase mitochondrial precursor (KAT/AadAT) (Kynurenine--oxoglutarate transaminase II) (EC 2.6.1.7) (Kynurenine aminotransferase II) (Kynurenine--oxoglutarate aminotransferase II) (2-aminoadipate transaminase) (EC 2. [Source:Uniprot/SWISSPROT;Acc:Q8N5Z0]
17.1598 -15.07 8.69124e-06 400 4 2 7 [+] picture button
CCDC103 SINFRUT00000132163 Coiled-coil domain-containing protein 103. [Source:Uniprot/SWISSPROT;Acc:Q8IW40]
16.4125 -23.9 9.09456e-06 400 4 2 6 [+] picture button
XPA SINFRUT00000135801 DNA-repair protein complementing XP-A cells (Xeroderma pigmentosum group A-complementing protein). [Source:Uniprot/SWISSPROT;Acc:P23025]
15.2003 -19.72 9.43073e-06 400 5 2 5 [+] picture button
ZNF276 (1 of 2) SINFRUT00000181520 Zinc finger protein 276 (Zfp-276). [Source:Uniprot/SWISSPROT;Acc:Q8N554]
15.3089 -16.89 9.84973e-06 400 4 3 7 [+] picture button
ZMYND11 SINFRUT00000162539 Zinc finger MYND domain-containing protein 11 (Adenovirus 5 E1A- binding protein) (BS69 protein). [Source:Uniprot/SWISSPROT;Acc:Q15326]
16.1775 -17.16 1.15981e-05 400 5 3 8 [+] picture button
SUPT16H SINFRUT00000166659 FACT complex subunit SPT16 (Facilitates chromatin transcription complex subunit SPT16) (hSPT16) (FACT 140 kDa subunit) (FACTp140) (Chromatin-specific transcription elongation factor 140 kDa subunit). [Source:Uniprot/SWISSPROT;Acc:Q9Y5B9]
16.5032 -18.52 1.44184e-05 400 6 2 8 [+] picture button
WIPF3 SINFRUT00000159050 WAS/WASL interacting protein family, member 3 [Source:RefSeq_peptide;Acc:NP_001073998]
15.7432 -24.51 1.58095e-05 400 4 3 5 [+] picture button
FAM69B SINFRUT00000183434 family with sequence similarity 69, member B (FAM69B), mRNA [Source:RefSeq_dna;Acc:NM_152421]
15.9405 -22.34 1.68132e-05 400 8 3 13 [+] picture button
KBTBD7 SINFRUT00000178546 Kelch repeat and BTB domain-containing protein 7. [Source:Uniprot/SWISSPROT;Acc:Q8WVZ9]
17.0461 -19.09 1.74685e-05 400 5 1 7 [+] picture button
SMF_HUMAN SINFRUT00000177558 SMF protein (Fragment). [Source:Uniprot/SWISSPROT;Acc:Q12766]
15.9954 -19.22 1.7469e-05 400 6 2 8 [+] picture button
WWP2 SINFRUT00000158314 NEDD4-like E3 ubiquitin-protein ligase WWP2 (EC 6.3.2.-) (WW domain- containing protein 2) (Atrophin-1-interacting protein 2) (AIP2). [Source:Uniprot/SWISSPROT;Acc:O00308]
15.7432 -19.49 1.84231e-05 400 7 2 8 [+] picture button
IARS2 SINFRUT00000138839 Isoleucyl-tRNA synthetase, mitochondrial precursor (EC 6.1.1.5) (Isoleucine--tRNA ligase) (IleRS). [Source:Uniprot/SWISSPROT;Acc:Q9NSE4]
15.6346 -23.54 1.99631e-05 400 2 1 2 [+] picture button
WNT8B SINFRUT00000139429 Protein Wnt-8b precursor. [Source:Uniprot/SWISSPROT;Acc:Q93098]
15.7432 -15.28 2.05435e-05 400 7 1 9 [+] picture button
UBE3C SINFRUT00000137557 Ubiquitin-protein ligase E3C (EC 6.3.2.-). [Source:Uniprot/SWISSPROT;Acc:Q15386]
16.5032 -30.6 2.34418e-05 400 4 7 6 [+] picture button
RTN4IP1 (1 of 2) SINFRUT00000181147 Reticulon-4-interacting protein 1, mitochondrial precursor (NOGO- interacting mitochondrial protein). [Source:Uniprot/SWISSPROT;Acc:Q8WWV3]
15.4513 -17.4 3.1696e-05 400 3 1 4 [+] picture button
ZC3HC1 SINFRUT00000168627 Nuclear-interacting partner of ALK (Nuclear-interacting partner of anaplastic lymphoma kinase) (hNIPA) (Zinc finger C3HC-type protein 1). [Source:Uniprot/SWISSPROT;Acc:Q86WB0]
17.8061 -21.05 3.26937e-05 400 6 1 6 [+] picture button
SINFRUT00000160357 Homolog of Homo sapiens "potassium channel tetramerisation domain containing 7 (KCTD7), mRNA [Source:RefSeq_dna;Acc:NM_153033]"
15.6733 -17.46 3.33859e-05 400 6 2 7 [+] picture button
NP_620419.2 SINFRUT00000150580 epidermal retinal dehydrogenase 2 [Source:RefSeq_peptide;Acc:NP_620419]
16.6118 -20.06 3.95392e-05 400 2 1 2 [+] picture button
ERRFI1 SINFRUT00000173770 ERBB receptor feedback inhibitor 1 (Mitogen-inducible gene 6 protein) (Mig-6). [Source:Uniprot/SWISSPROT;Acc:Q9UJM3]
18.2281 -21.83 4.21584e-05 400 7 3 7 [+] picture button
QPCTL SINFRUT00000152536 glutaminyl-peptide cyclotransferase-like [Source:RefSeq_peptide;Acc:NP_060129]
15.9603 -24.01 4.25141e-05 400 6 2 11 [+] picture button
Q90WM6_FUGRU SINFRUT00000136918 DMRT1 protein. [Source:Uniprot/SPTREMBL;Acc:Q4AE32]
18.3893 -24.08 4.65066e-05 400 5 1 5 [+] picture button
TUBB1 SINFRUT00000129205 Tubulin beta-1 chain. [Source:Uniprot/SWISSPROT;Acc:Q9H4B7]
17.0033 -16.74 4.84228e-05 400 7 2 10 [+] picture button
PRPF39 SINFRUT00000144596 Pre-mRNA-processing factor 39 (PRP39 homolog). [Source:Uniprot/SWISSPROT;Acc:Q86UA1]
15.4993 -16.55 5.15943e-05 400 10 3 12 [+] picture button
SACS SINFRUT00000167876 Sacsin. [Source:Uniprot/SWISSPROT;Acc:Q9NZJ4]
15.7432 -16.67 5.37848e-05 400 7 5 11 [+] picture button
UBXD8 SINFRUT00000164040 UBX domain-containing protein 8 (Protein ETEA). [Source:Uniprot/SWISSPROT;Acc:Q96CS3]
17.9146 -22.78 5.41182e-05 400 4 3 5 [+] picture button
ANKH SINFRUT00000142539 Progressive ankylosis protein homolog (ANK). [Source:Uniprot/SWISSPROT;Acc:Q9HCJ1]
15.3902 -17.49 5.99921e-05 400 6 4 9 [+] picture button
DOCK1 SINFRUT00000131862 Dedicator of cytokinesis protein 1 (180 kDa protein downstream of CRK) (DOCK180). [Source:Uniprot/SWISSPROT;Acc:Q14185]
16.0314 -27.1 6.21551e-05 400 7 2 6 [+] picture button
WDR54 SINFRUT00000154216 WD repeat protein 54. [Source:Uniprot/SWISSPROT;Acc:Q9H977]
15.2003 -17.24 6.29496e-05 400 5 2 5 [+] picture button
FBXL15 SINFRUT00000142445 F-box only protein 37 (F-box/LRR-repeat protein 15). [Source:Uniprot/SWISSPROT;Acc:Q9H469]
16.6118 -23.85 6.851e-05 400 5 2 8 [+] picture button
C19orf29 SINFRUT00000172202 Uncharacterized protein C19orf29 (Renal carcinoma antigen NY-REN-24). [Source:Uniprot/SWISSPROT;Acc:Q8WUQ7]
15.2003 -15.07 6.86755e-05 400 5 2 6 [+] picture button
ICMT SINFRUT00000128295 Protein-S-isoprenylcysteine O-methyltransferase (EC 2.1.1.100) (Isoprenylcysteine carboxylmethyltransferase) (Prenylcysteine carboxyl methyltransferase) (pcCMT) (Prenylated protein carboxyl methyltransferase) (PPMT). [Source:Uniprot/SWISSPROT;Acc:O60725]
15.2003 -17.93 7.06976e-05 400 7 1 6 [+] picture button
LOC390616 SINFRUT00000183444 Homolog of Homo sapiens "Ankyrin repeat domain 34 [Source:UniGene;Acc:Hs.331667]"
16.2822 -17.15 7.0823e-05 400 6 4 8 [+] picture button
KLHL14 SINFRUT00000129624 Kelch-like protein 14. [Source:Uniprot/SWISSPROT;Acc:Q9P2G3]
15.3381 -13.5 7.21081e-05 400 6 6 13 [+] picture button
RPRML SINFRUT00000182747 reprimo-like [Source:RefSeq_peptide;Acc:NP_981945]
15.9603 -25.15 7.34553e-05 400 10 3 14 [+] picture button
SINFRUT00000182487 NOT ANNOTATED
16.286 -17.23 7.3759e-05 400 4 1 2 [+] picture button

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Download table: GFF TXT
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