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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Takifugu rubripes and fru-miR-10c

851 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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HOXA3 SINFRUT00000159071 Homeobox protein Hox-A3 (Hox-1E). [Source:Uniprot/SWISSPROT;Acc:O43365]
17.7476 -16.81 0.00000000909035 400 4 9 6 [+] picture button
RAP2A (2 of 2) SINFRUT00000179673 Ras-related protein Rap-2a precursor (RbBP-30). [Source:Uniprot/SWISSPROT;Acc:P10114]
16.2674 -22.07 0.0000000345248 400 7 6 13 [+] picture button
RNF122 SINFRUT00000162718 RING finger protein 122. [Source:Uniprot/SWISSPROT;Acc:Q9H9V4]
16.451 -21.22 0.000000318784 400 3 3 6 [+] picture button
HOXD10 SINFRUT00000172263 Homeobox protein Hox-D10 (Hox-4D) (Hox-4E). [Source:Uniprot/SWISSPROT;Acc:P28358]
16.8281 -15.25 0.00000072834 400 3 1 3 [+] picture button
SINFRUT00000178860 Homolog of Brachydanio rerio "SnRNP-associated protein. [Source:Uniprot/SPTREMBL;Acc:Q9I9E5]"
16.185 -18.32 0.000001 400 9 1 3 [+] picture button
Q8QGY7_FUGRU SINFRUT00000148004 Guanine nucleotide binding protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q8QGY7]
17.286 -13.44 0.00000121181 400 6 2 5 [+] picture button
NP_078880.1 SINFRUT00000171816 CDNA: FLJ21908 fis, clone HEP03830. [Source:Uniprot/SPTREMBL;Acc:Q9H6T3]
16.5153 -16.57 0.00000227578 400 4 2 5 [+] picture button
DVL2 SINFRUT00000158842 Segment polarity protein dishevelled homolog DVL-2 (Dishevelled-2) (DSH homolog 2). [Source:Uniprot/SWISSPROT;Acc:O14641]
17.8365 -24.41 0.00000230842 400 6 5 10 [+] picture button
ACSS2 SINFRUT00000174745 Acetyl-coenzyme A synthetase, cytoplasmic (EC 6.2.1.1) (Acetate--CoA ligase) (Acyl-activating enzyme) (Acetyl-CoA synthetase) (ACS) (AceCS) (Acyl-CoA synthetase short-chain family member 2). [Source:Uniprot/SWISSPROT;Acc:Q9NR19]
15.8547 -23.07 0.0000049328 400 3 1 3 [+] picture button
CLUAP1 SINFRUT00000132534 Clusterin-associated protein 1. [Source:Uniprot/SWISSPROT;Acc:Q96AJ1]
15.3041 -11.86 0.00000572817 400 2 1 2 [+] picture button
GRIN2B (2 of 2) SINFRUT00000166181 Glutamate [NMDA] receptor subunit epsilon-2 precursor (N-methyl D- aspartate receptor subtype 2B) (NR2B) (NMDAR2B) (N-methyl-D-aspartate receptor subunit 3) (NR3) (hNR3). [Source:Uniprot/SWISSPROT;Acc:Q13224]
17.5551 -23.39 0.00000636988 400 4 5 7 [+] picture button
SVOP SINFRUT00000176065 Synaptic vesicle 2-related protein (SV2-related protein). [Source:Uniprot/SWISSPROT;Acc:Q8N4V2]
15.9648 -16.17 0.00000656074 400 4 2 4 [+] picture button
SINFRUT00000181962 Homolog of Sphoeroides nephelus "HoxD4b. [Source:Uniprot/SPTREMBL;Acc:Q6W987]"
17.1086 -18.02 0.00000728307 400 2 3 1 [+] picture button
CPN1 SINFRUT00000170286 Carboxypeptidase N catalytic chain precursor (EC 3.4.17.3) (CPN) (Carboxypeptidase N polypeptide 1) (Carboxypeptidase N small subunit) (Lysine carboxypeptidase) (Arginine carboxypeptidase) (Kininase-1) (Serum carboxypeptidase N) (SCPN) (Anaphylatoxin inac [Source:Uniprot/SWISSPROT;Acc:P15169]
16.5153 -13.2 0.00000752491 400 6 2 8 [+] picture button
AADAT SINFRUT00000135224 Kynurenine/alpha-aminoadipate aminotransferase mitochondrial precursor (KAT/AadAT) (Kynurenine--oxoglutarate transaminase II) (EC 2.6.1.7) (Kynurenine aminotransferase II) (Kynurenine--oxoglutarate aminotransferase II) (2-aminoadipate transaminase) (EC 2. [Source:Uniprot/SWISSPROT;Acc:Q8N5Z0]
17.9624 -18.97 0.00000869124 400 4 2 7 [+] picture button
CCDC103 SINFRUT00000132163 Coiled-coil domain-containing protein 103. [Source:Uniprot/SWISSPROT;Acc:Q8IW40]
16.0927 -21.54 0.00000909456 400 4 2 6 [+] picture button
C19orf61 SINFRUT00000160610 F17127_1. [Source:Uniprot/SPTREMBL;Acc:O60429]
15.194 -19.51 0.0000108555 400 5 3 6 [+] picture button
ZMYND11 SINFRUT00000162539 Zinc finger MYND domain-containing protein 11 (Adenovirus 5 E1A- binding protein) (BS69 protein). [Source:Uniprot/SWISSPROT;Acc:Q15326]
16.5153 -20.38 0.0000115981 400 5 3 8 [+] picture button
PRIM2A SINFRUT00000154785 DNA primase large subunit (EC 2.7.7.-) (DNA primase 58 kDa subunit) (p58). [Source:Uniprot/SWISSPROT;Acc:P49643]
15.4584 -17.92 0.0000135861 400 4 2 4 [+] picture button
SUPT16H SINFRUT00000166659 FACT complex subunit SPT16 (Facilitates chromatin transcription complex subunit SPT16) (hSPT16) (FACT 140 kDa subunit) (FACTp140) (Chromatin-specific transcription elongation factor 140 kDa subunit). [Source:Uniprot/SWISSPROT;Acc:Q9Y5B9]
15.7446 -19.48 0.0000144184 400 6 2 8 [+] picture button
KLHDC6 SINFRUT00000158195 kelch domain containing 6 [Source:RefSeq_peptide;Acc:NP_997218]
15.4142 -22.24 0.0000150115 400 6 2 10 [+] picture button
KBTBD7 SINFRUT00000178546 Kelch repeat and BTB domain-containing protein 7. [Source:Uniprot/SWISSPROT;Acc:Q8WVZ9]
16.9557 -18.86 0.0000174685 400 5 1 7 [+] picture button
SMF_HUMAN SINFRUT00000177558 SMF protein (Fragment). [Source:Uniprot/SWISSPROT;Acc:Q12766]
16.6624 -22.02 0.000017469 400 6 2 8 [+] picture button
UBE3C SINFRUT00000137557 Ubiquitin-protein ligase E3C (EC 6.3.2.-). [Source:Uniprot/SWISSPROT;Acc:Q15386]
16.185 -21.17 0.0000234418 400 4 7 6 [+] picture button
RTN4IP1 (1 of 2) SINFRUT00000181147 Reticulon-4-interacting protein 1, mitochondrial precursor (NOGO- interacting mitochondrial protein). [Source:Uniprot/SWISSPROT;Acc:Q8WWV3]
15.89 -20.37 0.000031696 400 3 1 4 [+] picture button
ZC3HC1 SINFRUT00000168627 Nuclear-interacting partner of ALK (Nuclear-interacting partner of anaplastic lymphoma kinase) (hNIPA) (Zinc finger C3HC-type protein 1). [Source:Uniprot/SWISSPROT;Acc:Q86WB0]
17.0658 -20.05 0.0000326937 400 6 1 6 [+] picture button
SINFRUT00000160357 Homolog of Homo sapiens "potassium channel tetramerisation domain containing 7 (KCTD7), mRNA [Source:RefSeq_dna;Acc:NM_153033]"
16.4464 -17.83 0.0000333859 400 6 2 7 [+] picture button
ERRFI1 SINFRUT00000173770 ERBB receptor feedback inhibitor 1 (Mitogen-inducible gene 6 protein) (Mig-6). [Source:Uniprot/SWISSPROT;Acc:Q9UJM3]
17.9326 -16.48 0.0000421584 400 7 3 7 [+] picture button
QPCTL SINFRUT00000152536 glutaminyl-peptide cyclotransferase-like [Source:RefSeq_peptide;Acc:NP_060129]
15.8547 -22 0.0000425141 400 6 2 11 [+] picture button
Q90WM6_FUGRU SINFRUT00000136918 DMRT1 protein. [Source:Uniprot/SPTREMBL;Acc:Q4AE32]
18.428 -22.38 0.0000465066 400 5 1 5 [+] picture button
TUBB1 SINFRUT00000129205 Tubulin beta-1 chain. [Source:Uniprot/SWISSPROT;Acc:Q9H4B7]
18.2383 -16.32 0.0000484228 400 7 2 10 [+] picture button
UBXD8 SINFRUT00000164040 UBX domain-containing protein 8 (Protein ETEA). [Source:Uniprot/SWISSPROT;Acc:Q96CS3]
17.6163 -20.8 0.0000541182 400 4 3 5 [+] picture button
DOCK1 SINFRUT00000131862 Dedicator of cytokinesis protein 1 (180 kDa protein downstream of CRK) (DOCK180). [Source:Uniprot/SWISSPROT;Acc:Q14185]
16.5898 -29.65 0.0000621551 400 7 2 6 [+] picture button
PSMD3 SINFRUT00000155984 26S proteasome non-ATPase regulatory subunit 3 (26S proteasome regulatory subunit S3) (Proteasome subunit p58). [Source:Uniprot/SWISSPROT;Acc:O43242]
15.194 -13.76 0.000065602 400 5 4 11 [+] picture button
FBXL15 SINFRUT00000142445 F-box only protein 37 (F-box/LRR-repeat protein 15). [Source:Uniprot/SWISSPROT;Acc:Q9H469]
15.7446 -20.15 0.00006851 400 5 2 8 [+] picture button
ICMT SINFRUT00000128295 Protein-S-isoprenylcysteine O-methyltransferase (EC 2.1.1.100) (Isoprenylcysteine carboxylmethyltransferase) (Prenylcysteine carboxyl methyltransferase) (pcCMT) (Prenylated protein carboxyl methyltransferase) (PPMT). [Source:Uniprot/SWISSPROT;Acc:O60725]
16.4052 -16.75 0.0000706976 400 7 1 6 [+] picture button
LOC390616 SINFRUT00000183444 Homolog of Homo sapiens "Ankyrin repeat domain 34 [Source:UniGene;Acc:Hs.331667]"
16.5128 -17.16 0.000070823 400 6 4 8 [+] picture button
SINFRUT00000182487 NOT ANNOTATED
16.9557 -18.08 0.000073759 400 4 1 2 [+] picture button
CDK5RAP3 SINFRUT00000139391 CDK5 regulatory subunit-associated protein 3 (CDK5 activator-binding protein C53) (HSF-27 protein). [Source:Uniprot/SWISSPROT;Acc:Q96JB5]
15.194 -14.68 0.0000771417 400 8 2 13 [+] picture button
FAM133B SINFRUT00000144168 MGC40405 protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q6P5S6]
17.0658 -18.48 0.0000831382 400 6 2 8 [+] picture button
LANCL3 SINFRUT00000157140 LanC lantibiotic synthetase component C-like 3 [Source:RefSeq_peptide;Acc:NP_940913]
16.9557 -15.71 0.0000846926 400 6 1 5 [+] picture button
SINFRUT00000180693 Homolog of Homo sapiens "Lipid phosphate phosphohydrolase 3 [Source:IPI;Acc:IPI00021453]"
15.194 -15.98 0.0000852065 400 3 1 3 [+] picture button
FAM118B SINFRUT00000174643 family with sequence similarity 118, member B (FAM118B), mRNA [Source:RefSeq_dna;Acc:NM_024556]
15.194 -15.22 0.0000868357 400 6 1 6 [+] picture button
SINFRUT00000180529 NOT ANNOTATED
15.7446 -16.85 0.0000907629 400 6 1 5 [+] picture button
P79752_FUGRU SINFRUT00000158628 Wnt1. [Source:Uniprot/SPTREMBL;Acc:P79752]
17.3961 -16.11 0.0000918746 400 6 3 6 [+] picture button
SINFRUT00000180418 Homolog of Homo sapiens "PREDICTED "similar to ADP-ribosylation factor-like 1 [Source:IPI;Acc:IPI00242972]"
16.5153 -19.04 0.0000965004 400 7 2 7 [+] picture button
BDNF SINFRUT00000151386 Brain-derived neurotrophic factor precursor (BDNF) (Abrineurin). [Source:Uniprot/SWISSPROT;Acc:P23560]
16.5572 -13.71 0.0000982553 400 6 9 12 [+] picture button
TXNDC5 SINFRUT00000132572 Thioredoxin domain-containing protein 5 precursor (Thioredoxin-like protein p46) (Endoplasmic reticulum protein ERp46). [Source:Uniprot/SWISSPROT;Acc:Q8NBS9]
15.5243 -15.97 0.000107184 400 3 2 4 [+] picture button
Q5IRA9_FUGRU SINFRUT00000178426 Stanniocalcin 2. [Source:Uniprot/SPTREMBL;Acc:Q5IRA9]
16.2881 -20.76 0.000112254 400 8 4 8 [+] picture button
AHCTF1P SINFRUT00000150191 CDNA FLJ32832 fis, clone TESTI2003196. (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q96M44]
16.4052 -22.36 0.000114533 400 5 3 4 [+] picture button

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Download table: GFF TXT
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