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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cel-miR-78

169 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG13542 ENSCBRT00000007760 Y66H1A.5 [Source:RefSeq_peptide;Acc:NP_499928]Y66H1A.5 [Source:RefSeq_peptide;Acc:NP_499928] BY ORTHOLOGY TO:Y66H1A.5
15.5753 -26.72 0.00104561 1300 3 1 2 [+] picture button
CBG04364 ENSCBRT00000007711 C15C6.2b [Source:RefSeq_peptide;Acc:NP_493080]C15C6.2b [Source:RefSeq_peptide;Acc:NP_493080] BY ORTHOLOGY TO:C15C6.2b
15.5765 -21.82 0.00143241 1300 1 1 1 [+] picture button
CBG08087 ENSCBRT00000003538 F53H8.3 [Source:RefSeq_peptide;Acc:NP_508181]F53H8.3 [Source:RefSeq_peptide;Acc:NP_508181] BY ORTHOLOGY TO:F53H8.3
15.6948 -28.75 0.00193108 1300 3 1 5 [+] picture button
CBG00936 ENSCBRT00000004057 hypothetical protein LOC525027 [Source:RefSeq_peptide;Acc:NP_001029725]hypothetical protein LOC525027 [Source:RefSeq_peptide;Acc:NP_001029725] BY ORTHOLOGY TO:ENSBTAT00000049264
15.3923 -21.1 0.00200958 1300 8 1 5 [+] picture button
CBG06727 ENSCBRT00000009730 Dipeptidyl-peptidase 1 precursor (EC 3.4.14.1) (Dipeptidyl-peptidase I) (DPP-I) (DPPI) (Cathepsin C) (Cathepsin J) (Dipeptidyl transferase) [Contains: Dipeptidyl-peptidase 1 exclusion domain chain (Dipeptidyl- peptidase I exclusion domain chain); Dipeptid [Source:Uniprot/SWISSPROT;Acc:P53634]Dipeptidyl-peptidase 1 precursor (EC 3.4.14.1) (Dipeptidyl-peptidase I) (DPP-I) (DPPI) (Cathepsin C) (Cathepsin J) (Dipeptidyl transferase) [Contains: Dipeptidyl-peptidase 1 exclusion domain chain (Dipeptidyl- peptidase I exclusion domain chain); Dipeptid [Source:Uniprot/SWISSPROT;Acc:P53634] BY ORTHOLOGY TO:SINFRUT00000128175
15.6816 -22.46 0.00231708 1300 5 1 4 [+] picture button
CBG17482 ENSCBRT00000002047 Serpentine receptor class gamma-9 (Protein srg-9). [Source:Uniprot/SWISSPROT;Acc:P46566]Serpentine receptor class gamma-9 (Protein srg-9). [Source:Uniprot/SWISSPROT;Acc:P46566] BY ORTHOLOGY TO:T12A2.10
17.9261 -30.32 0.00296571 1300 3 1 4 [+] picture button
CBG15645 ENSCBRT00000011897 Novel protein similar to human general control of amino-acid synthesis 1-like 1 (Yeast) (GCN1) (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q7T160]Novel protein similar to human general control of amino-acid synthesis 1-like 1 (Yeast) (GCN1) (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q7T160] BY ORTHOLOGY TO:ENSDART00000081272
15.324 -14.21 0.00299442 1300 5 1 6 [+] picture button
CBG10739 ENSCBRT00000012492 R02D3.8 [Source:RefSeq_peptide;Acc:NP_499887]R02D3.8 [Source:RefSeq_peptide;Acc:NP_499887] BY ORTHOLOGY TO:R02D3.8
16.0467 -27.42 0.00306747 1300 3 1 2 [+] picture button
CBG00402 ENSCBRT00000001971 NOT ANNOTATED
15.5167 -25.15 0.00325247 1300 5 1 7 [+] picture button
CBG15355 ENSCBRT00000010172 Mitochondrial import inner membrane translocase subunit Tim23. [Source:Uniprot/SWISSPROT;Acc:Q7T2P6]Mitochondrial import inner membrane translocase subunit Tim23. [Source:Uniprot/SWISSPROT;Acc:Q7T2P6] BY ORTHOLOGY TO:ENSDART00000105523
17.0342 -23.89 0.00366962 1300 5 1 4 [+] picture button
CBG21830 ENSCBRT00000004838 Serpentine Receptor, class H family member (srh-92) [Source:RefSeq_peptide;Acc:NP_504918]Serpentine Receptor, class H family member (srh-92) [Source:RefSeq_peptide;Acc:NP_504918] BY ORTHOLOGY TO:F25E5.13
17.6218 -30.4 0.00412569 1300 4 1 4 [+] picture button
CBG19245 ENSCBRT00000013449 ZK682.5 [Source:RefSeq_peptide;Acc:NP_505402]ZK682.5 [Source:RefSeq_peptide;Acc:NP_505402] BY ORTHOLOGY TO:ZK682.5
15.1743 -22.53 0.00442486 1300 2 2 2 [+] picture button
CBG17620 ENSCBRT00000002163 Bestrophin-1. [Source:Uniprot/SWISSPROT;Acc:Q21973]Bestrophin-1. [Source:Uniprot/SWISSPROT;Acc:Q21973] BY ORTHOLOGY TO:R13.3
14.9955 -23.97 0.004529 1300 5 1 5 [+] picture button
CBG10721 ENSCBRT00000012474 F56B3.2a [Source:RefSeq_peptide;Acc:NP_499983]F56B3.2a [Source:RefSeq_peptide;Acc:NP_499983] BY ORTHOLOGY TO:F56B3.2b
15.0565 -20.76 0.00454625 1300 11 1 9 [+] picture button
CBG11281 ENSCBRT00000014502 PQ loop repeat-containing protein 3 precursor. [Source:Uniprot/SWISSPROT;Acc:Q8N755]PQ loop repeat-containing protein 3 precursor. [Source:Uniprot/SWISSPROT;Acc:Q8N755] BY ORTHOLOGY TO:ENSOANT00000004245
14.657 -22.17 0.00459958 1300 5 1 4 [+] picture button
CBG09321 ENSCBRT00000006341 F44E7.5b [Source:RefSeq_peptide;Acc:NP_872177]F44E7.5b [Source:RefSeq_peptide;Acc:NP_872177] BY ORTHOLOGY TO:F44E7.5a
15.6733 -26.71 0.00500157 1300 3 1 3 [+] picture button
CBG05922 ENSCBRT00000009006 Temporarily Assigned Gene name family member (tag-199) [Source:RefSeq_peptide;Acc:NP_501236]Temporarily Assigned Gene name family member (tag-199) [Source:RefSeq_peptide;Acc:NP_501236] BY ORTHOLOGY TO:F45E4.4
14.9617 -17.41 0.00536284 1300 3 2 4 [+] picture button
CBG06319 ENSCBRT00000010834 F54E2.2 [Source:RefSeq_peptide;Acc:NP_503760]F54E2.2 [Source:RefSeq_peptide;Acc:NP_503760] BY ORTHOLOGY TO:F54E2.2
14.8806 -21.1 0.00571096 1300 4 1 5 [+] picture button
CBG22832 ENSCBRT00000008867 srz-1 encodes a predicted seven-pass G protein-coupled receptor. as loss of srz-1 activity via large-scale RNAi screens results in no obvious abnormalities, the precise role of SRZ-1 in C. elegans development and/or behavior is not yet known. [Source: WormBase]srz-1 encodes a predicted seven-pass G protein-coupled receptor. as loss of srz-1 activity via large-scale RNAi screens results in no obvious abnormalities, the precise role of SRZ-1 in C. elegans development and/or behavior is not yet known. [Source: WormBase] BY ORTHOLOGY TO:F14F8.3
15.021 -20.84 0.0058459 1300 2 1 2 [+] picture button
CBG13251 ENSCBRT00000001079 Y41C4A.6 [Source:RefSeq_peptide;Acc:NP_499512]Y41C4A.6 [Source:RefSeq_peptide;Acc:NP_499512] BY ORTHOLOGY TO:Y41C4A.6
17.2105 -31.97 0.00643966 1300 2 1 2 [+] picture button
CBG22656 ENSCBRT00000009854 Seven TM Receptor family member (str-231) [Source:RefSeq_peptide;Acc:NP_507017]Seven TM Receptor family member (str-231) [Source:RefSeq_peptide;Acc:NP_507017] BY ORTHOLOGY TO:C06C6.3
15.1955 -24 0.00646537 1300 4 1 3 [+] picture button
CBG03086 ENSCBRT00000006989 F59B10.2 [Source:RefSeq_peptide;Acc:NP_496263]F59B10.2 [Source:RefSeq_peptide;Acc:NP_496263] BY ORTHOLOGY TO:F59B10.2
14.8987 -19.93 0.006717 1300 2 1 2 [+] picture button
CBG14098 ENSCBRT00000002554 F49H12.4 [Source:RefSeq_peptide;Acc:NP_508382]F49H12.4 [Source:RefSeq_peptide;Acc:NP_508382] BY ORTHOLOGY TO:F49H12.4
14.8177 -17.21 0.00701238 1300 1 1 1 [+] picture button
CBG05373 ENSCBRT00000004652 KIAA2013 (KIAA2013), mRNA [Source:RefSeq_dna;Acc:NM_138346]KIAA2013 (KIAA2013), mRNA [Source:RefSeq_dna;Acc:NM_138346] BY ORTHOLOGY TO:ENSORLT00000024220
17.0745 -28.94 0.00745991 1300 2 1 2 [+] picture button
CBG09282 ENSCBRT00000006295 Adenosine 3'-phospho 5'-phosphosulfate transporter 1 (PAPS transporter 1). [Source:Uniprot/SWISSPROT;Acc:Q8MXJ9]Adenosine 3'-phospho 5'-phosphosulfate transporter 1 (PAPS transporter 1). [Source:Uniprot/SWISSPROT;Acc:Q8MXJ9] BY ORTHOLOGY TO:M03F8.2a
14.7827 -21.12 0.00749793 1300 3 1 3 [+] picture button
CBG19955 ENSCBRT00000002459 The elo-5 gene encodes a paralog of elo-1 and elo-2, each of which encodes a polyunsaturated fatty acid (PUFA) elongase. ELO-5 is required for normally rapid growth and for normal fatty acid composition. [Source: WormBase]The elo-5 gene encodes a paralog of elo-1 and elo-2, each of which encodes a polyunsaturated fatty acid (PUFA) elongase. ELO-5 is required for normally rapid growth and for normal fatty acid composition. [Source: WormBase] BY ORTHOLOGY TO:F41H10.7
17.0125 -26.39 0.00797619 1300 4 1 12 [+] picture button
CBG19746 ENSCBRT00000000346 MGC79473 protein. [Source:Uniprot/SPTREMBL;Acc:Q66JK0]MGC79473 protein. [Source:Uniprot/SPTREMBL;Acc:Q66JK0] BY ORTHOLOGY TO:ENSXETT00000052962
16.9752 -21.31 0.0083034 1300 5 1 5 [+] picture button
CBG12304 ENSCBRT00000013341 Hypothetical protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:A3KNM8]Hypothetical protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:A3KNM8] BY ORTHOLOGY TO:ENSDART00000062941
14.679 -23.19 0.0085285 1300 3 2 2 [+] picture button
CBG03879 ENSCBRT00000008708 TPX2 (Targeting Protein for Xenopus Klp2)-Like family member (tpxl-1) [Source:RefSeq_peptide;Acc:NP_740805]TPX2 (Targeting Protein for Xenopus Klp2)-Like family member (tpxl-1) [Source:RefSeq_peptide;Acc:NP_740805] BY ORTHOLOGY TO:Y39G10AR.12a
16.9365 -31 0.00865818 1300 4 1 3 [+] picture button
CBG23352 ENSCBRT00000011467 F57F5.3 [Source:RefSeq_peptide;Acc:NP_506012]F57F5.3 [Source:RefSeq_peptide;Acc:NP_506012] BY ORTHOLOGY TO:F57F5.3
16.9357 -23.78 0.00866498 1300 1 1 1 [+] picture button
CBG18966 ENSCBRT00000014132 K04A8.5 [Source:RefSeq_peptide;Acc:NP_504662]K04A8.5 [Source:RefSeq_peptide;Acc:NP_504662] BY ORTHOLOGY TO:K04A8.5
15.0245 -20.88 0.00905057 1300 4 2 4 [+] picture button
CBG12031 ENSCBRT00000011690 mex-5 encodes a novel protein that contains two CCCH zinc finger motifs. maternally provided MEX-5, which functions partly redundantly with the highly similar CCCH finger protein MEX-6, is essential for transducing polarity cues and establishing soma/germline asymmetry in the early embryo. in regulating soma/germline asymmetry, MEX-5 interacts with, and activates, the SOCS-box protein ZIF-1, which functions as part of an E3 ubiquitin ligase complex that degrades germ plasm proteins in somatic blastomeres. accordingly, ectopic expression of MEX-5 throughout the early embryo results in reduced expression of germline proteins in germline blastomeres. MEX-5 is a cytoplasmic protein expressed at uniform levels in oocytes and newly fertilized eggs. from the 1-cell to 4-cell stages of embryogenesis, MEX-5 expression is dynamic, with highest levels seen in the anterior AB blastomere and, for a time, its daughters, the anterior portion of the P1 blastomere, P1 centrosomes (both, then posterior only), and the EMS and C blastomeres. the asymmetric distribution of MEX-5 in early embryos depends upon wild-type activity of the PAR and OMA-1 proteins. [Source: WormBase]mex-5 encodes a novel protein that contains two CCCH zinc finger motifs. maternally provided MEX-5, which functions partly redundantly with the highly similar CCCH finger protein MEX-6, is essential for transducing polarity cues and establishing soma/germline asymmetry in the early embryo. in regulating soma/germline asymmetry, MEX-5 interacts with, and activates, the SOCS-box protein ZIF-1, which functions as part of an E3 ubiquitin ligase complex that degrades germ plasm proteins in somatic blastomeres. accordingly, ectopic expression of MEX-5 throughout the early embryo results in reduced expression of germline proteins in germline blastomeres. MEX-5 is a cytoplasmic protein expressed at uniform levels in oocytes and newly fertilized eggs. from the 1-cell to 4-cell stages of embryogenesis, MEX-5 expression is dynamic, with highest levels seen in the anterior AB blastomere and, for a time, its daughters, the anterior portion of the P1 blastomere, P1 centrosomes (both, then posterior only), and the EMS and C blastomeres. the asymmetric distribution of MEX-5 in early embryos depends upon wild-type activity of the PAR and OMA-1 proteins. [Source: WormBase] BY ORTHOLOGY TO:W02A2.7
15.5824 -27.68 0.00905278 1300 4 2 4 [+] picture button
CBG11983 ENSCBRT00000011745 T28F2.7 [Source:RefSeq_peptide;Acc:NP_491196]T28F2.7 [Source:RefSeq_peptide;Acc:NP_491196] BY ORTHOLOGY TO:T28F2.7
14.6758 -21.13 0.00906703 1300 7 1 9 [+] picture button
CBG09343 ENSCBRT00000006352 F25B4.4 [Source:RefSeq_peptide;Acc:NP_504497]F25B4.4 [Source:RefSeq_peptide;Acc:NP_504497] BY ORTHOLOGY TO:F25B4.4
15.7844 -26.33 0.00968937 1300 2 1 2 [+] picture button
ENSCBRT00000010034 Y48G1C.10 [Source:RefSeq_peptide;Acc:NP_871894]Y48G1C.10 [Source:RefSeq_peptide;Acc:NP_871894] BY ORTHOLOGY TO:Y48G1C.10
16.6554 -28.32 0.0117206 1300 1 1 1 [+] picture button
CBG02400 ENSCBRT00000006607 F07F6.1 [Source:RefSeq_peptide;Acc:NP_495032]F07F6.1 [Source:RefSeq_peptide;Acc:NP_495032] BY ORTHOLOGY TO:F07F6.1
16.6058 -26.55 0.0123621 1300 3 1 3 [+] picture button
CBG21818 ENSCBRT00000004895 Y32G9A.8 [Source:RefSeq_peptide;Acc:NP_503523]Y32G9A.8 [Source:RefSeq_peptide;Acc:NP_503523] BY ORTHOLOGY TO:Y32G9A.8
16.5647 -27.7 0.0129209 1300 4 1 4 [+] picture button
CBG17683 ENSCBRT00000002258 The ric-3 gene encodes a novel, highly charged protein with two transmembrane domains and extensive coiled-coil domains. it is necessary for the function of at least four nicotinic acetylcholine receptors. specifically, it is needed for assembly or trafficking of the DEG-3 nicotinic acetylcholine receptor. [Source: WormBase]The ric-3 gene encodes a novel, highly charged protein with two transmembrane domains and extensive coiled-coil domains. it is necessary for the function of at least four nicotinic acetylcholine receptors. specifically, it is needed for assembly or trafficking of the DEG-3 nicotinic acetylcholine receptor. [Source: WormBase] BY ORTHOLOGY TO:T14A8.1
16.5449 -31.81 0.0131983 1300 5 1 5 [+] picture button
CBG08374 ENSCBRT00000013049 F13B12.6 [Source:RefSeq_peptide;Acc:NP_741483]F13B12.6 [Source:RefSeq_peptide;Acc:NP_741483] BY ORTHOLOGY TO:F13B12.6
16.5449 -30.71 0.0131983 1300 5 1 5 [+] picture button
CBG25096 ENSCBRT00000000615 F15A4.11 [Source:RefSeq_peptide;Acc:NP_496652]F15A4.11 [Source:RefSeq_peptide;Acc:NP_496652] BY ORTHOLOGY TO:F15A4.11
16.5364 -27.76 0.0133189 1300 3 1 3 [+] picture button
CBG21923 ENSCBRT00000008203 The unc-14 gene encodes an activity required for both axonogenesis and sex myoblast migration. [Source: WormBase]The unc-14 gene encodes an activity required for both axonogenesis and sex myoblast migration. [Source: WormBase] BY ORTHOLOGY TO:K10D3.2
16.5156 -22.33 0.0136202 1300 4 2 4 [+] picture button
CBG08006 ENSCBRT00000004750 Y52B11A.4 [Source:RefSeq_peptide;Acc:NP_492856]Y52B11A.4 [Source:RefSeq_peptide;Acc:NP_492856] BY ORTHOLOGY TO:Y52B11A.4
16.5125 -24.9 0.0136652 1300 5 1 5 [+] picture button
CBG00640 ENSCBRT00000003239 F14E5.1 [Source:RefSeq_peptide;Acc:NP_495772]F14E5.1 [Source:RefSeq_peptide;Acc:NP_495772] BY ORTHOLOGY TO:F14E5.1
16.4749 -26.84 0.0142283 1300 6 1 11 [+] picture button
CBG20762 ENSCBRT00000001359 Y48E1B.2a [Source:RefSeq_peptide;Acc:NP_496845]Y48E1B.2a [Source:RefSeq_peptide;Acc:NP_496845] BY ORTHOLOGY TO:Y48E1B.2b
16.4404 -27.7 0.0147635 1300 6 1 7 [+] picture button
CBG02097 ENSCBRT00000004171 K02E10.1 [Source:RefSeq_peptide;Acc:NP_508455]K02E10.1 [Source:RefSeq_peptide;Acc:NP_508455] BY ORTHOLOGY TO:K02E10.1
16.4316 -20.75 0.0149043 1300 7 1 7 [+] picture button
CBG05209 ENSCBRT00000002604 Immature colon carcinoma transcript 1 protein precursor. [Source:Uniprot/SWISSPROT;Acc:Q3T116]Immature colon carcinoma transcript 1 protein precursor. [Source:Uniprot/SWISSPROT;Acc:Q3T116] BY ORTHOLOGY TO:ENSBTAT00000004276
16.3849 -23.9 0.0156686 1300 4 1 4 [+] picture button
CBG14514 ENSCBRT00000003468 ceh-1 encodes a protein that contains a homeobox domain. [Source: WormBase]ceh-1 encodes a protein that contains a homeobox domain. [Source: WormBase] BY ORTHOLOGY TO:F16H11.4
16.3491 -21.85 0.0162818 1300 7 2 21 [+] picture button
CBG01468 ENSCBRT00000001892 F41E6.14 [Source:RefSeq_peptide;Acc:NP_505228]F41E6.14 [Source:RefSeq_peptide;Acc:NP_505228] BY ORTHOLOGY TO:F41E6.14
16.3358 -26.4 0.0165148 1300 3 1 3 [+] picture button
CBG06570 ENSCBRT00000011046 Protein C20orf11 (Two-hybrid associated protein 1 with RanBPM) (Twa1). [Source:Uniprot/SWISSPROT;Acc:Q9NWU2]Protein C20orf11 (Two-hybrid associated protein 1 with RanBPM) (Twa1). [Source:Uniprot/SWISSPROT;Acc:Q9NWU2] BY ORTHOLOGY TO:ENSXETT00000013463
16.3345 -26.48 0.0165378 1300 2 1 2 [+] picture button
CBG10898 ENSCBRT00000001278 RGD1304878 protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q5EBA2]RGD1304878 protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q5EBA2] BY ORTHOLOGY TO:ENSRNOT00000006131
16.3342 -19.81 0.0165433 1300 3 1 6 [+] picture button

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