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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cel-miR-66

189 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG16137 ENSCBRT00000012576 Tubulin beta-4 chain (Beta-4 tubulin). [Source:Uniprot/SWISSPROT;Acc:P41937]Tubulin beta-4 chain (Beta-4 tubulin). [Source:Uniprot/SWISSPROT;Acc:P41937] BY ORTHOLOGY TO:B0272.1
15.7398 -17.95 5.36334e-05 1300 3 1 4 [+] picture button
CBG16628 ENSCBRT00000014673 ZC262.3a [Source:RefSeq_peptide;Acc:NP_498834]ZC262.3a [Source:RefSeq_peptide;Acc:NP_498834] BY ORTHOLOGY TO:ZC262.3a
15.6754 -27.61 6.32785e-05 1300 3 2 2 [+] picture button
CBG14538 ENSCBRT00000003409 Mesodermal Lineage Specification family member (mls-2) [Source:RefSeq_peptide;Acc:NP_508815]Mesodermal Lineage Specification family member (mls-2) [Source:RefSeq_peptide;Acc:NP_508815] BY ORTHOLOGY TO:C39E6.4
15.8405 -19.43 7.19407e-05 1300 4 2 6 [+] picture button
CBG12065 ENSCBRT00000011660 RIKEN cDNA 4921504I05 gene [Source:MarkerSymbol;Acc:MGI:1913957]RIKEN cDNA 4921504I05 gene [Source:MarkerSymbol;Acc:MGI:1913957] BY ORTHOLOGY TO:ENSMUST00000068235
15.3172 -12.76 0.000344614 1300 8 2 10 [+] picture button
CBG07597 ENSCBRT00000011123 mbk-1 encodes a putative dual-specificity kinase (predicted to have both serine/threonine and tyrosine substrates) that is orthologous to Drosophila MINIBRAIN and mammalian DYRK1A/MnbK and that has a glutamine/asparagine-rich domain. MBK-1 is found in most or all nuclei, is dispensable for viability, and perturbs olfaction in AWC when overexpressed. [Source: WormBase]mbk-1 encodes a putative dual-specificity kinase (predicted to have both serine/threonine and tyrosine substrates) that is orthologous to Drosophila MINIBRAIN and mammalian DYRK1A/MnbK and that has a glutamine/asparagine-rich domain. MBK-1 is found in most or all nuclei, is dispensable for viability, and perturbs olfaction in AWC when overexpressed. [Source: WormBase] BY ORTHOLOGY TO:T04C10.1
16.4874 -19.36 0.000350853 1300 10 1 14 [+] picture button
CBG04965 ENSCBRT00000010177 Serpentine Receptor, class H family member (srh-95) [Source:RefSeq_peptide;Acc:NP_507100]Serpentine Receptor, class H family member (srh-95) [Source:RefSeq_peptide;Acc:NP_507100] BY ORTHOLOGY TO:F21H7.11
19.4069 -30.95 0.00095921 1300 2 1 6 [+] picture button
CBG14717 ENSCBRT00000006788 Serpentine Receptor, class V family member (srv-7) [Source:RefSeq_peptide;Acc:NP_508950]Serpentine Receptor, class V family member (srv-7) [Source:RefSeq_peptide;Acc:NP_508950] BY ORTHOLOGY TO:T22B7.5
15.9693 -17.16 0.00107942 1300 5 1 10 [+] picture button
CBG23203 ENSCBRT00000012157 F57B7.2 [Source:RefSeq_peptide;Acc:NP_505900]F57B7.2 [Source:RefSeq_peptide;Acc:NP_505900] BY ORTHOLOGY TO:F57B7.2
16.981 -21.08 0.00109405 1300 7 2 14 [+] picture button
CBG21774 ENSCBRT00000004669 fem-3 encodes a novel protein that promotes male development in all tissues. [Source: WormBase]fem-3 encodes a novel protein that promotes male development in all tissues. [Source: WormBase] BY ORTHOLOGY TO:C01F6.4
16.4658 -22.09 0.00111471 1300 2 2 6 [+] picture button
CBG14733 ENSCBRT00000006784 W01C8.5 [Source:RefSeq_peptide;Acc:NP_508959]W01C8.5 [Source:RefSeq_peptide;Acc:NP_508959] BY ORTHOLOGY TO:W01C8.5
16.9604 -21.63 0.00174636 1300 3 1 8 [+] picture button
CBG02173 ENSCBRT00000004200 Fibroblast growth factor receptor-like 1 precursor (FGF receptor-like protein 1) (Fibroblast growth factor receptor 5) (FGFR-like protein) (FGF homologous factor receptor). [Source:Uniprot/SWISSPROT;Acc:Q8N441]Fibroblast growth factor receptor-like 1 precursor (FGF receptor-like protein 1) (Fibroblast growth factor receptor 5) (FGFR-like protein) (FGF homologous factor receptor). [Source:Uniprot/SWISSPROT;Acc:Q8N441] BY ORTHOLOGY TO:ENSOANT00000000414
16.2541 -24.75 0.0017656 1300 4 2 7 [+] picture button
CBG16500 ENSCBRT00000014620 F11H8.2 [Source:RefSeq_peptide;Acc:NP_498532]F11H8.2 [Source:RefSeq_peptide;Acc:NP_498532] BY ORTHOLOGY TO:F11H8.2
15.7196 -14.35 0.00177718 1300 5 2 7 [+] picture button
CBG13885 ENSCBRT00000013661 C54E4.4 [Source:RefSeq_peptide;Acc:NP_500172]C54E4.4 [Source:RefSeq_peptide;Acc:NP_500172] BY ORTHOLOGY TO:C54E4.4
15.3512 -20.03 0.00187272 1300 4 1 6 [+] picture button
CBG13287 ENSCBRT00000001051 Y47D3B.4 [Source:RefSeq_peptide;Acc:NP_499469]Y47D3B.4 [Source:RefSeq_peptide;Acc:NP_499469] BY ORTHOLOGY TO:Y47D3B.4
16.2692 -16.1 0.00252987 1300 4 1 6 [+] picture button
CBG21345 ENSCBRT00000000964 ZC434.3 [Source:RefSeq_peptide;Acc:NP_492710]ZC434.3 [Source:RefSeq_peptide;Acc:NP_492710] BY ORTHOLOGY TO:ZC434.3
15.1645 -18.57 0.00269806 1300 5 1 4 [+] picture button
CBG12234 ENSCBRT00000013231 mRNA cap guanine-N7 methyltransferase (EC 2.1.1.56) (mRNA (guanine- N(7)-)-methyltransferase) (RG7MT1) (mRNA cap methyltransferase) (hcm1p) (hCMT1) (hMet). [Source:Uniprot/SWISSPROT;Acc:O43148]mRNA cap guanine-N7 methyltransferase (EC 2.1.1.56) (mRNA (guanine- N(7)-)-methyltransferase) (RG7MT1) (mRNA cap methyltransferase) (hcm1p) (hCMT1) (hMet). [Source:Uniprot/SWISSPROT;Acc:O43148] BY ORTHOLOGY TO:ENSOANT00000013199
15.8357 -20.57 0.00274532 1300 4 1 5 [+] picture button
CBG02111 ENSCBRT00000004188 CG15627-PA [Source:RefSeq_peptide;Acc:NP_608863]CG15627-PA [Source:RefSeq_peptide;Acc:NP_608863] BY ORTHOLOGY TO:CG15627-RA
15.729 -22.2 0.00279451 1300 4 1 5 [+] picture button
CBG04600 ENSCBRT00000010489 R02D5.3 [Source:RefSeq_peptide;Acc:NP_506593]R02D5.3 [Source:RefSeq_peptide;Acc:NP_506593] BY ORTHOLOGY TO:R02D5.3
16.1271 -19.96 0.00331383 1300 5 1 6 [+] picture button
CBG18919 ENSCBRT00000014164 F13H6.1 [Source:RefSeq_peptide;Acc:NP_504620]F13H6.1 [Source:RefSeq_peptide;Acc:NP_504620] BY ORTHOLOGY TO:F13H6.1
15.9882 -17.61 0.00361488 1300 7 1 13 [+] picture button
CBG09317 ENSCBRT00000006330 ZC250.3 [Source:RefSeq_peptide;Acc:NP_504521]ZC250.3 [Source:RefSeq_peptide;Acc:NP_504521] BY ORTHOLOGY TO:ZC250.3
16.2048 -16.39 0.00413459 1300 5 1 5 [+] picture button
CBG14158 ENSCBRT00000002584 ral guanine nucleotide exchange factor,ral guanine nucleotide exchange factor, BY ORTHOLOGY TO:AAEL000858-RA
15.6106 -16.37 0.00414284 1300 1 2 4 [+] picture button
CBG08238 ENSCBRT00000003541 Rab3 GTPase-activating protein non-catalytic subunit (Rab3 GTPase- activating protein 150 kDa subunit) (Rab3-GAP p150) (Rab3-GAP regulatory subunit) (RAB3-GAP150) (RGAP-iso). [Source:Uniprot/SWISSPROT;Acc:Q9H2M9]Rab3 GTPase-activating protein non-catalytic subunit (Rab3 GTPase- activating protein 150 kDa subunit) (Rab3-GAP p150) (Rab3-GAP regulatory subunit) (RAB3-GAP150) (RGAP-iso). [Source:Uniprot/SWISSPROT;Acc:Q9H2M9] BY ORTHOLOGY TO:ENST00000358951
15.2823 -15.01 0.00419442 1300 3 1 3 [+] picture button
CBG01053 ENSCBRT00000002306 Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase wee-1.3 (EC 2.7.11.1) (Myt1 kinase) (Lethal protein 37). [Source:Uniprot/SWISSPROT;Acc:O18209]Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase wee-1.3 (EC 2.7.11.1) (Myt1 kinase) (Lethal protein 37). [Source:Uniprot/SWISSPROT;Acc:O18209] BY ORTHOLOGY TO:Y53C12A.1
15.2796 -17.13 0.0043784 1300 3 1 7 [+] picture button
CBG14497 ENSCBRT00000003498 C05E11.3 [Source:RefSeq_peptide;Acc:NP_508785]C05E11.3 [Source:RefSeq_peptide;Acc:NP_508785] BY ORTHOLOGY TO:C05E11.3
15.4033 -13.86 0.0043995 1300 6 1 9 [+] picture button
CBG14580 ENSCBRT00000003316 Temporarily Assigned Gene name family member (tag-226) [Source:RefSeq_peptide;Acc:NP_508850]Temporarily Assigned Gene name family member (tag-226) [Source:RefSeq_peptide;Acc:NP_508850] BY ORTHOLOGY TO:ZC8.3
15.0914 -16.44 0.00453096 1300 3 1 2 [+] picture button
CBG02887 ENSCBRT00000006172 klp-17 encodes a C-terminal kinesin motor protein orthologous to Drosophila NCD and Saccharomyces cerevisiae KAR3. by homology, KLP-17 is predicted to function as a minus-end directed motor. loss of klp-17 activity via RNAi results in embryonic lethality generally at the one- or two-cell stage with disorganized mitotic spindles and polyploid nuclei, suggesting that KLP-17 plays a role in chromosome segregation and germline development. in situ hybridization studies reveal that klp-17 mRNA is localized specifically to cell nuclei during early development, from the one-cell stage of embryogenesis until early larval stages. a klp-17::gfp transgene did not yield detectable GFP expression, but did result in a small percentage of morphologically abnormal males and intersexual animals that grew slowly and died upon reaching maturity, consistent with a role for klp-17 in chromosome dynamics. [Source: WormBase]klp-17 encodes a C-terminal kinesin motor protein orthologous to Drosophila NCD and Saccharomyces cerevisiae KAR3. by homology, KLP-17 is predicted to function as a minus-end directed motor. loss of klp-17 activity via RNAi results in embryonic lethality generally at the one- or two-cell stage with disorganized mitotic spindles and polyploid nuclei, suggesting that KLP-17 plays a role in chromosome segregation and germline development. in situ hybridization studies reveal that klp-17 mRNA is localized specifically to cell nuclei during early development, from the one-cell stage of embryogenesis until early larval stages. a klp-17::gfp transgene did not yield detectable GFP expression, but did result in a small percentage of morphologically abnormal males and intersexual animals that grew slowly and died upon reaching maturity, consistent with a role for klp-17 in chromosome dynamics. [Source: WormBase] BY ORTHOLOGY TO:W02B12.7
14.9911 -14.4 0.004545 1300 4 2 5 [+] picture button
CBG03810 ENSCBRT00000008662 B0379.2 [Source:RefSeq_peptide;Acc:NP_492656]B0379.2 [Source:RefSeq_peptide;Acc:NP_492656] BY ORTHOLOGY TO:B0379.2
15.5934 -16.29 0.00458969 1300 3 1 4 [+] picture button
CBG17020 ENSCBRT00000011920 ZK105.6 [Source:RefSeq_peptide;Acc:NP_504998]ZK105.6 [Source:RefSeq_peptide;Acc:NP_504998] BY ORTHOLOGY TO:ZK105.6
15.3859 -11.46 0.00458969 1300 2 1 7 [+] picture button
CBG14473 ENSCBRT00000003529 Niemann-Pick C1 protein precursor. [Source:Uniprot/SWISSPROT;Acc:O15118]Niemann-Pick C1 protein precursor. [Source:Uniprot/SWISSPROT;Acc:O15118] BY ORTHOLOGY TO:ENSOANT00000019309
15.2458 -12.98 0.00494168 1300 4 2 7 [+] picture button
CBG18983 ENSCBRT00000014113 T10H9.1 [Source:RefSeq_peptide;Acc:NP_504686]T10H9.1 [Source:RefSeq_peptide;Acc:NP_504686] BY ORTHOLOGY TO:T10H9.1
15.2458 -17.3 0.0051405 1300 1 2 1 [+] picture button
CBG10898 ENSCBRT00000001278 RGD1304878 protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q5EBA2]RGD1304878 protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q5EBA2] BY ORTHOLOGY TO:ENSRNOT00000006131
15.4966 -21.85 0.00529123 1300 3 1 6 [+] picture button
CBG05787 ENSCBRT00000009114 DNA-directed RNA polymerase III largest subunit (EC 2.7.7.6) (RPC155) (RPC1). [Source:Uniprot/SWISSPROT;Acc:O14802]DNA-directed RNA polymerase III largest subunit (EC 2.7.7.6) (RPC155) (RPC1). [Source:Uniprot/SWISSPROT;Acc:O14802] BY ORTHOLOGY TO:ENSMODT00000001257
17.6665 -28.5 0.0058071 1300 1 1 1 [+] picture button
CBG22828 ENSCBRT00000008955 W04G5.8 [Source:RefSeq_peptide;Acc:NP_492972]W04G5.8 [Source:RefSeq_peptide;Acc:NP_492972] BY ORTHOLOGY TO:W04G5.8
15.1084 -21.34 0.00586121 1300 3 1 4 [+] picture button
CBG04575 ENSCBRT00000010473 R11H6.5 [Source:RefSeq_peptide;Acc:NP_506614]R11H6.5 [Source:RefSeq_peptide;Acc:NP_506614] BY ORTHOLOGY TO:R11H6.5
15.055 -21.31 0.00648983 1300 4 1 5 [+] picture button
CBG04861 ENSCBRT00000010203 F26D2.10 [Source:RefSeq_peptide;Acc:NP_507152]F26D2.10 [Source:RefSeq_peptide;Acc:NP_507152] BY ORTHOLOGY TO:F26D2.10
15.2772 -12.99 0.00818597 1300 4 2 5 [+] picture button
CBG19035 ENSCBRT00000014070 gpa-10 encodes a member of the G protein alpha subunit family of heterotrimeric GTPases. it is expressed in ADF, ASI, ASJ, ALN, CAN, LUA, and the spermatheca. [Source: WormBase]gpa-10 encodes a member of the G protein alpha subunit family of heterotrimeric GTPases. it is expressed in ADF, ASI, ASJ, ALN, CAN, LUA, and the spermatheca. [Source: WormBase] BY ORTHOLOGY TO:C55H1.2
14.93 -17.14 0.00822189 1300 4 1 8 [+] picture button
CBG09054 ENSCBRT00000008383 C28H8.8 [Source:RefSeq_peptide;Acc:NP_498279]C28H8.8 [Source:RefSeq_peptide;Acc:NP_498279] BY ORTHOLOGY TO:C28H8.8
17.2825 -24.64 0.00862481 1300 4 1 6 [+] picture button
CBG15183 ENSCBRT00000010370 K02F3.9 [Source:RefSeq_peptide;Acc:NP_497272]K02F3.9 [Source:RefSeq_peptide;Acc:NP_497272] BY ORTHOLOGY TO:K02F3.9
17.275 -19.08 0.00869159 1300 7 1 11 [+] picture button
CBG05178 ENSCBRT00000002642 W03A5.5 [Source:RefSeq_peptide;Acc:NP_498157]W03A5.5 [Source:RefSeq_peptide;Acc:NP_498157] BY ORTHOLOGY TO:W03A5.5
15.1995 -16.55 0.00991927 1300 3 1 6 [+] picture button
CBG00135 ENSCBRT00000001523 small calcium-binding mitochondrial carrier, putativesmall calcium-binding mitochondrial carrier, putative BY ORTHOLOGY TO:AAEL004589-RA
14.9431 -17.52 0.010036 1300 2 1 7 [+] picture button
CBG19478 ENSCBRT00000013072 F14B4.1 [Source:RefSeq_peptide;Acc:NP_492474]F14B4.1 [Source:RefSeq_peptide;Acc:NP_492474] BY ORTHOLOGY TO:F14B4.1
17.1168 -25.95 0.0102254 1300 5 1 5 [+] picture button
CBG14244 ENSCBRT00000002687 C18B2.6 [Source:RefSeq_peptide;Acc:NP_508622]C18B2.6 [Source:RefSeq_peptide;Acc:NP_508622] BY ORTHOLOGY TO:C18B2.6
17.0961 -18.81 0.0104459 1300 5 2 10 [+] picture button
ENSCBRT00000009961 F23C8.8 [Source:RefSeq_peptide;Acc:NP_490976]F23C8.8 [Source:RefSeq_peptide;Acc:NP_490976] BY ORTHOLOGY TO:F23C8.8
17.0785 -14.26 0.0106357 1300 3 1 7 [+] picture button
CBG05377 ENSCBRT00000003009 F26A1.10 [Source:RefSeq_peptide;Acc:NP_498000]F26A1.10 [Source:RefSeq_peptide;Acc:NP_498000] BY ORTHOLOGY TO:F26A1.10
17.038 -22.3 0.0110878 1300 3 1 2 [+] picture button
CBG17688 ENSCBRT00000002267 conserved hypothetical proteinconserved hypothetical protein BY ORTHOLOGY TO:AAEL005846-RA
15.6813 -18.61 0.0114878 1300 5 2 9 [+] picture button
CBG00175 ENSCBRT00000001517 B0563.7 [Source:RefSeq_peptide;Acc:NP_509544]B0563.7 [Source:RefSeq_peptide;Acc:NP_509544] BY ORTHOLOGY TO:B0563.7
17.0028 -21.36 0.0114955 1300 3 1 6 [+] picture button
CBG20689 ENSCBRT00000001463 R06B9.3 [Source:RefSeq_peptide;Acc:NP_496882]R06B9.3 [Source:RefSeq_peptide;Acc:NP_496882] BY ORTHOLOGY TO:R06B9.3
16.9925 -23.04 0.0116171 1300 5 1 5 [+] picture button
CBG14172 ENSCBRT00000002593 sul-1 encodes a member of the sulfatase family. [Source: WormBase]sul-1 encodes a member of the sulfatase family. [Source: WormBase] BY ORTHOLOGY TO:K09C4.8
16.9779 -22.65 0.0117925 1300 4 1 5 [+] picture button
CBG17253 ENSCBRT00000000500 C39B10.2 [Source:RefSeq_peptide;Acc:NP_509753]C39B10.2 [Source:RefSeq_peptide;Acc:NP_509753] BY ORTHOLOGY TO:C39B10.2
16.9725 -19.95 0.0118578 1300 2 1 5 [+] picture button
CBG19749 ENSCBRT00000000351 dihydrouridine synthase 2-like (SMM1, S. cerevisiae) [Source:MarkerSymbol;Acc:MGI:1913619]dihydrouridine synthase 2-like (SMM1, S. cerevisiae) [Source:MarkerSymbol;Acc:MGI:1913619] BY ORTHOLOGY TO:ENSMUST00000034375
15.5264 -18.58 0.0120291 1300 1 1 5 [+] picture button

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