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Target Listing


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Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cel-miR-65

186 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG16137 ENSCBRT00000012576 Tubulin beta-4 chain (Beta-4 tubulin). [Source:Uniprot/SWISSPROT;Acc:P41937]Tubulin beta-4 chain (Beta-4 tubulin). [Source:Uniprot/SWISSPROT;Acc:P41937] BY ORTHOLOGY TO:B0272.1
16.2379 -13.07 1e-06 1300 3 1 4 [+] picture button
CBG01438 ENSCBRT00000002522 PREDICTED: Bos taurus hypothetical LOC540837 (LOC540837), mRNA. [Source:RefSeq_dna;Acc:XR_027922]PREDICTED: Bos taurus hypothetical LOC540837 (LOC540837), mRNA. [Source:RefSeq_dna;Acc:XR_027922] BY ORTHOLOGY TO:ENSBTAT00000012249
15.5154 -18.89 2.75952e-05 1300 8 1 6 [+] picture button
CBG13885 ENSCBRT00000013661 C54E4.4 [Source:RefSeq_peptide;Acc:NP_500172]C54E4.4 [Source:RefSeq_peptide;Acc:NP_500172] BY ORTHOLOGY TO:C54E4.4
16.9156 -27.43 3.84e-05 1300 4 1 6 [+] picture button
CBG18269 ENSCBRT00000001671 R08H2.10 [Source:RefSeq_peptide;Acc:NP_506815]R08H2.10 [Source:RefSeq_peptide;Acc:NP_506815] BY ORTHOLOGY TO:R08H2.10
15.1409 -16.32 6.04274e-05 1300 4 1 4 [+] picture button
CBG24228 ENSCBRT00000005499 Serpentine Receptor, class X family member (srx-120) [Source:RefSeq_peptide;Acc:NP_496677]Serpentine Receptor, class X family member (srx-120) [Source:RefSeq_peptide;Acc:NP_496677] BY ORTHOLOGY TO:F49C5.2
16.2389 -15.08 0.000188978 1300 6 1 9 [+] picture button
CBG13287 ENSCBRT00000001051 Y47D3B.4 [Source:RefSeq_peptide;Acc:NP_499469]Y47D3B.4 [Source:RefSeq_peptide;Acc:NP_499469] BY ORTHOLOGY TO:Y47D3B.4
16.8537 -25.57 0.000320262 1300 4 1 6 [+] picture button
CBG15996 ENSCBRT00000014248 F31B9.1 [Source:RefSeq_peptide;Acc:NP_510612]F31B9.1 [Source:RefSeq_peptide;Acc:NP_510612] BY ORTHOLOGY TO:F31B9.1
15.838 -17.52 0.000763247 1300 4 1 6 [+] picture button
CBG16500 ENSCBRT00000014620 F11H8.2 [Source:RefSeq_peptide;Acc:NP_498532]F11H8.2 [Source:RefSeq_peptide;Acc:NP_498532] BY ORTHOLOGY TO:F11H8.2
15.6226 -12.31 0.00106569 1300 5 2 7 [+] picture button
CBG12065 ENSCBRT00000011660 RIKEN cDNA 4921504I05 gene [Source:MarkerSymbol;Acc:MGI:1913957]RIKEN cDNA 4921504I05 gene [Source:MarkerSymbol;Acc:MGI:1913957] BY ORTHOLOGY TO:ENSMUST00000068235
16.018 -12.42 0.00110368 1300 8 2 10 [+] picture button
CBG21774 ENSCBRT00000004669 fem-3 encodes a novel protein that promotes male development in all tissues. [Source: WormBase]fem-3 encodes a novel protein that promotes male development in all tissues. [Source: WormBase] BY ORTHOLOGY TO:C01F6.4
15.5731 -16.19 0.0011768 1300 2 2 6 [+] picture button
CBG02017 ENSCBRT00000005879 Gamma-aminobutyric acid type B receptor, subunit 1 precursor (GABA-B receptor 1) (GABA-B-R1) (Gb1). [Source:Uniprot/SWISSPROT;Acc:Q9UBS5]Gamma-aminobutyric acid type B receptor, subunit 1 precursor (GABA-B receptor 1) (GABA-B-R1) (Gb1). [Source:Uniprot/SWISSPROT;Acc:Q9UBS5] BY ORTHOLOGY TO:ENSXETT00000043889
15.664 -16.33 0.00118797 1300 3 1 4 [+] picture button
CBG19254 ENSCBRT00000013457 Ubiquinone biosynthesis monooxygenase COQ6 (EC 1.14.13.-). [Source:Uniprot/SWISSPROT;Acc:Q9Y2Z9]Ubiquinone biosynthesis monooxygenase COQ6 (EC 1.14.13.-). [Source:Uniprot/SWISSPROT;Acc:Q9Y2Z9] BY ORTHOLOGY TO:ENSGACT00000010389
15.838 -25.06 0.00136522 1300 4 1 5 [+] picture button
CBG14473 ENSCBRT00000003529 Niemann-Pick C1 protein precursor. [Source:Uniprot/SWISSPROT;Acc:O15118]Niemann-Pick C1 protein precursor. [Source:Uniprot/SWISSPROT;Acc:O15118] BY ORTHOLOGY TO:ENSOANT00000019309
15.5372 -12.48 0.0014192 1300 4 2 7 [+] picture button
CBG17688 ENSCBRT00000002267 conserved hypothetical proteinconserved hypothetical protein BY ORTHOLOGY TO:AAEL005846-RA
15.2868 -15.26 0.00189832 1300 5 2 9 [+] picture button
CBG07597 ENSCBRT00000011123 mbk-1 encodes a putative dual-specificity kinase (predicted to have both serine/threonine and tyrosine substrates) that is orthologous to Drosophila MINIBRAIN and mammalian DYRK1A/MnbK and that has a glutamine/asparagine-rich domain. MBK-1 is found in most or all nuclei, is dispensable for viability, and perturbs olfaction in AWC when overexpressed. [Source: WormBase]mbk-1 encodes a putative dual-specificity kinase (predicted to have both serine/threonine and tyrosine substrates) that is orthologous to Drosophila MINIBRAIN and mammalian DYRK1A/MnbK and that has a glutamine/asparagine-rich domain. MBK-1 is found in most or all nuclei, is dispensable for viability, and perturbs olfaction in AWC when overexpressed. [Source: WormBase] BY ORTHOLOGY TO:T04C10.1
15.8879 -15.97 0.00231967 1300 10 1 14 [+] picture button
CBG10898 ENSCBRT00000001278 RGD1304878 protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q5EBA2]RGD1304878 protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q5EBA2] BY ORTHOLOGY TO:ENSRNOT00000006131
16.0888 -20.71 0.00234383 1300 3 1 6 [+] picture button
CBG22763 ENSCBRT00000004245 SaPosin-like Protein family member (spp-13) [Source:RefSeq_peptide;Acc:NP_509428]SaPosin-like Protein family member (spp-13) [Source:RefSeq_peptide;Acc:NP_509428] BY ORTHOLOGY TO:F08F1.6
15.1648 -15.89 0.00239089 1300 5 1 6 [+] picture button
CBG12413 ENSCBRT00000013156 F32H2.7 [Source:RefSeq_peptide;Acc:NP_492420]F32H2.7 [Source:RefSeq_peptide;Acc:NP_492420] BY ORTHOLOGY TO:F32H2.7
15.4285 -21.02 0.00247446 1300 8 2 10 [+] picture button
CBG18919 ENSCBRT00000014164 F13H6.1 [Source:RefSeq_peptide;Acc:NP_504620]F13H6.1 [Source:RefSeq_peptide;Acc:NP_504620] BY ORTHOLOGY TO:F13H6.1
15.8907 -17.39 0.00266047 1300 7 1 13 [+] picture button
CBG12234 ENSCBRT00000013231 mRNA cap guanine-N7 methyltransferase (EC 2.1.1.56) (mRNA (guanine- N(7)-)-methyltransferase) (RG7MT1) (mRNA cap methyltransferase) (hcm1p) (hCMT1) (hMet). [Source:Uniprot/SWISSPROT;Acc:O43148]mRNA cap guanine-N7 methyltransferase (EC 2.1.1.56) (mRNA (guanine- N(7)-)-methyltransferase) (RG7MT1) (mRNA cap methyltransferase) (hcm1p) (hCMT1) (hMet). [Source:Uniprot/SWISSPROT;Acc:O43148] BY ORTHOLOGY TO:ENSOANT00000013199
15.447 -22.22 0.00293951 1300 4 1 5 [+] picture button
CBG23203 ENSCBRT00000012157 F57B7.2 [Source:RefSeq_peptide;Acc:NP_505900]F57B7.2 [Source:RefSeq_peptide;Acc:NP_505900] BY ORTHOLOGY TO:F57B7.2
15.6226 -16.7 0.00304233 1300 7 2 14 [+] picture button
CBG00661 ENSCBRT00000003223 PUF (Pumilio/FBF) domain-containing family member (puf-5) [Source:RefSeq_peptide;Acc:NP_495814]PUF (Pumilio/FBF) domain-containing family member (puf-5) [Source:RefSeq_peptide;Acc:NP_495814] BY ORTHOLOGY TO:F54C9.8
15.2213 -13.31 0.00313798 1300 6 1 6 [+] picture button
CBG03383 ENSCBRT00000007145 sarcolemma associated protein [Source:MarkerSymbol;Acc:MGI:1933549]sarcolemma associated protein [Source:MarkerSymbol;Acc:MGI:1933549] BY ORTHOLOGY TO:ENSMUST00000090359
15.0403 -13.14 0.00337729 1300 1 1 3 [+] picture button
CBG02095 ENSCBRT00000004173 syg-1 encodes a novel transmembrane protein that is a member of the immunoglobulin superfamily of proteins. during larval development, SYG-1 activity is required cell autonomously within the HSNL neuron to specify proper synaptic specificity with its targets, such as vulval muscles and the VC neuron. in regulating synapse formation, SYG-1 acts as a receptor for a second immunoglobulin superfamily protein, SYG-2, a synaptic guidepost protein that interacts with SYG-1 and whose activity is essential for proper SYG-1 localization in HSNL. expression of a SYG-1::GFP reporter fusion in HSNL under the control of the unc-86 promoter reveals that SYG-1 localizes to axons and accumulates at future sites of synaptic vesicle clustering, while expression under an endogenous reporter reveals weak expression in head motorneurons, occasionally in HSN neurons, and in other cells in the vulval region. [Source: WormBase]syg-1 encodes a novel transmembrane protein that is a member of the immunoglobulin superfamily of proteins. during larval development, SYG-1 activity is required cell autonomously within the HSNL neuron to specify proper synaptic specificity with its targets, such as vulval muscles and the VC neuron. in regulating synapse formation, SYG-1 acts as a receptor for a second immunoglobulin superfamily protein, SYG-2, a synaptic guidepost protein that interacts with SYG-1 and whose activity is essential for proper SYG-1 localization in HSNL. expression of a SYG-1::GFP reporter fusion in HSNL under the control of the unc-86 promoter reveals that SYG-1 localizes to axons and accumulates at future sites of synaptic vesicle clustering, while expression under an endogenous reporter reveals weak expression in head motorneurons, occasionally in HSN neurons, and in other cells in the vulval region. [Source: WormBase] BY ORTHOLOGY TO:K02E10.8
15.0699 -15.51 0.00352937 1300 7 2 12 [+] picture button
CBG01002 ENSCBRT00000002147 Putative acid phosphatase C05C10.1 (EC 3.1.3.2). [Source:Uniprot/SWISSPROT;Acc:Q09448]Putative acid phosphatase C05C10.1 (EC 3.1.3.2). [Source:Uniprot/SWISSPROT;Acc:Q09448] BY ORTHOLOGY TO:C05C10.1
14.767 -18.35 0.00354637 1300 6 1 7 [+] picture button
CBG23614 ENSCBRT00000001534 F13A2.4 [Source:RefSeq_peptide;Acc:NP_504210]F13A2.4 [Source:RefSeq_peptide;Acc:NP_504210] BY ORTHOLOGY TO:F13A2.4
14.8552 -10.8 0.00360726 1300 4 1 6 [+] picture button
CBG18456 ENSCBRT00000000985 K07F5.7 [Source:RefSeq_peptide;Acc:NP_501765]K07F5.7 [Source:RefSeq_peptide;Acc:NP_501765] BY ORTHOLOGY TO:K07F5.7
14.7478 -11.54 0.00368336 1300 3 1 3 [+] picture button
CBG14733 ENSCBRT00000006784 W01C8.5 [Source:RefSeq_peptide;Acc:NP_508959]W01C8.5 [Source:RefSeq_peptide;Acc:NP_508959] BY ORTHOLOGY TO:W01C8.5
15.011 -15.96 0.00388298 1300 3 1 8 [+] picture button
CBG17020 ENSCBRT00000011920 ZK105.6 [Source:RefSeq_peptide;Acc:NP_504998]ZK105.6 [Source:RefSeq_peptide;Acc:NP_504998] BY ORTHOLOGY TO:ZK105.6
14.9333 -9.36 0.0042604 1300 2 1 7 [+] picture button
CBG10881 ENSCBRT00000001287 Max-binding protein MNT (Protein ROX) (Myc antagonist MNT). [Source:Uniprot/SWISSPROT;Acc:Q99583]Max-binding protein MNT (Protein ROX) (Myc antagonist MNT). [Source:Uniprot/SWISSPROT;Acc:Q99583] BY ORTHOLOGY TO:ENSOANT00000013762
15.0403 -11.74 0.00444062 1300 6 2 8 [+] picture button
CBG14717 ENSCBRT00000006788 Serpentine Receptor, class V family member (srv-7) [Source:RefSeq_peptide;Acc:NP_508950]Serpentine Receptor, class V family member (srv-7) [Source:RefSeq_peptide;Acc:NP_508950] BY ORTHOLOGY TO:T22B7.5
14.8916 -10.72 0.00450789 1300 5 1 10 [+] picture button
CBG14538 ENSCBRT00000003409 Mesodermal Lineage Specification family member (mls-2) [Source:RefSeq_peptide;Acc:NP_508815]Mesodermal Lineage Specification family member (mls-2) [Source:RefSeq_peptide;Acc:NP_508815] BY ORTHOLOGY TO:C39E6.4
14.8686 -11.87 0.00471249 1300 4 2 6 [+] picture button
CBG19035 ENSCBRT00000014070 gpa-10 encodes a member of the G protein alpha subunit family of heterotrimeric GTPases. it is expressed in ADF, ASI, ASJ, ALN, CAN, LUA, and the spermatheca. [Source: WormBase]gpa-10 encodes a member of the G protein alpha subunit family of heterotrimeric GTPases. it is expressed in ADF, ASI, ASJ, ALN, CAN, LUA, and the spermatheca. [Source: WormBase] BY ORTHOLOGY TO:C55H1.2
14.8324 -15.05 0.00505301 1300 4 1 8 [+] picture button
CBG05178 ENSCBRT00000002642 W03A5.5 [Source:RefSeq_peptide;Acc:NP_498157]W03A5.5 [Source:RefSeq_peptide;Acc:NP_498157] BY ORTHOLOGY TO:W03A5.5
15.0034 -13.77 0.00568039 1300 3 1 6 [+] picture button
CBG09353 ENSCBRT00000006373 acy-4 encodes an adenylate cyclase most similar to vertebrate type V and type VI adenylate cyclases. by homology, ACY-4 is a predicted plasma membrane protein that catalyzes the conversion of ATP to cyclic AMP, a key second messenger in intracellular signaling. as loss of acy-4 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of ACY-4 in C. elegans development and/or behavior is not yet known. [Source: WormBase]acy-4 encodes an adenylate cyclase most similar to vertebrate type V and type VI adenylate cyclases. by homology, ACY-4 is a predicted plasma membrane protein that catalyzes the conversion of ATP to cyclic AMP, a key second messenger in intracellular signaling. as loss of acy-4 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of ACY-4 in C. elegans development and/or behavior is not yet known. [Source: WormBase] BY ORTHOLOGY TO:T01C2.1
14.8044 -16.86 0.00569858 1300 4 2 5 [+] picture button
CBG14497 ENSCBRT00000003498 C05E11.3 [Source:RefSeq_peptide;Acc:NP_508785]C05E11.3 [Source:RefSeq_peptide;Acc:NP_508785] BY ORTHOLOGY TO:C05E11.3
14.8183 -11.93 0.00673937 1300 6 1 9 [+] picture button
CBG00135 ENSCBRT00000001523 small calcium-binding mitochondrial carrier, putativesmall calcium-binding mitochondrial carrier, putative BY ORTHOLOGY TO:AAEL004589-RA
14.7478 -11.57 0.00738162 1300 2 1 7 [+] picture button
CBG01053 ENSCBRT00000002306 Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase wee-1.3 (EC 2.7.11.1) (Myt1 kinase) (Lethal protein 37). [Source:Uniprot/SWISSPROT;Acc:O18209]Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase wee-1.3 (EC 2.7.11.1) (Myt1 kinase) (Lethal protein 37). [Source:Uniprot/SWISSPROT;Acc:O18209] BY ORTHOLOGY TO:Y53C12A.1
15.3769 -18.67 0.00740983 1300 3 1 7 [+] picture button
CBG12994 ENSCBRT00000012945 ZK1290.11 [Source:RefSeq_peptide;Acc:NP_495586]ZK1290.11 [Source:RefSeq_peptide;Acc:NP_495586] BY ORTHOLOGY TO:ZK1290.11
16.1077 -24.76 0.00763243 1300 3 2 4 [+] picture button
CBG00303 ENSCBRT00000000300 gld-1 encodes a protein containing a K homology RNA binding domain that is required for meiotic cell cycle progression during oogenesis in parallel with gld-2, and also affects spermatogenesis. it physically interacts with its putative mRNA targets in vitro and with FOG-2, and is expressed in the cytoplasm at high levels during meiotic prophase. [Source: WormBase]gld-1 encodes a protein containing a K homology RNA binding domain that is required for meiotic cell cycle progression during oogenesis in parallel with gld-2, and also affects spermatogenesis. it physically interacts with its putative mRNA targets in vitro and with FOG-2, and is expressed in the cytoplasm at high levels during meiotic prophase. [Source: WormBase] BY ORTHOLOGY TO:T23G11.3
14.888 -16.82 0.00767373 1300 3 1 5 [+] picture button
CBG22761 ENSCBRT00000004243 The ced-8 gene encodes a homolog of the human putative membrane transporter XK. ced-8 is required for apoptosis to occur with normal speed during embryonic development. [Source: WormBase]The ced-8 gene encodes a homolog of the human putative membrane transporter XK. ced-8 is required for apoptosis to occur with normal speed during embryonic development. [Source: WormBase] BY ORTHOLOGY TO:F08F1.5
14.5916 -16.69 0.00799256 1300 7 1 8 [+] picture button
CBG24474 ENSCBRT00000010866 H23L24.4 [Source:RefSeq_peptide;Acc:NP_501495]H23L24.4 [Source:RefSeq_peptide;Acc:NP_501495] BY ORTHOLOGY TO:H23L24.4
14.6038 -17.95 0.00822864 1300 4 2 5 [+] picture button
CBG11584 ENSCBRT00000011392 oxysterol-binding protein 1aoxysterol-binding protein 1a BY ORTHOLOGY TO:AAEL012056-RA
15.0699 -19.32 0.00841883 1300 5 1 5 [+] picture button
CBG02173 ENSCBRT00000004200 Fibroblast growth factor receptor-like 1 precursor (FGF receptor-like protein 1) (Fibroblast growth factor receptor 5) (FGFR-like protein) (FGF homologous factor receptor). [Source:Uniprot/SWISSPROT;Acc:Q8N441]Fibroblast growth factor receptor-like 1 precursor (FGF receptor-like protein 1) (Fibroblast growth factor receptor 5) (FGFR-like protein) (FGF homologous factor receptor). [Source:Uniprot/SWISSPROT;Acc:Q8N441] BY ORTHOLOGY TO:ENSOANT00000000414
14.5994 -17.32 0.00849929 1300 4 2 7 [+] picture button
CBG14606 ENSCBRT00000003274 Pantothenate kinase 3 (EC 2.7.1.33) (Pantothenic acid kinase 3) (hPanK3). [Source:Uniprot/SWISSPROT;Acc:Q9H999]Pantothenate kinase 3 (EC 2.7.1.33) (Pantothenic acid kinase 3) (hPanK3). [Source:Uniprot/SWISSPROT;Acc:Q9H999] BY ORTHOLOGY TO:ENSORLT00000022780
14.5552 -22.5 0.00855863 1300 4 1 5 [+] picture button
CBG23228 ENSCBRT00000012195 Uncharacterized protein C12orf4. [Source:Uniprot/SWISSPROT;Acc:Q9NQ89]Uncharacterized protein C12orf4. [Source:Uniprot/SWISSPROT;Acc:Q9NQ89] BY ORTHOLOGY TO:ENST00000261250
14.6349 -13.28 0.00881392 1300 3 2 6 [+] picture button
CBG19042 ENSCBRT00000014049 unc-68 encodes a ryanodine receptor ortholog that is expressed in body-wall muscle cells and is required for normal body tension and locomotion. unc-68 mutants are flaccid, sluggish, and resistant to ryanodine, but have normal muscle ultrastructure. UNC-68 is dispensable for excitation-contraction coupling itself, but may amplify its calcium signals. the unc-68/kra-1(kh30) mutation is an S1444N substitution at a putative protein kinase C phosphorylation site. UNC-68 reduced unc-103(sy557)-induced spicule protraction by one half. unc-68 is orthologous to the human genes RYR1 (OMIM:180901, mutated in malignant hyperthermia and central core disease), RYR2 (OMIM:180902, mutated in stress-induced polymorphic ventricular tachycardia), and RYR3 (OMIM:180903). [Source: WormBase]unc-68 encodes a ryanodine receptor ortholog that is expressed in body-wall muscle cells and is required for normal body tension and locomotion. unc-68 mutants are flaccid, sluggish, and resistant to ryanodine, but have normal muscle ultrastructure. UNC-68 is dispensable for excitation-contraction coupling itself, but may amplify its calcium signals. the unc-68/kra-1(kh30) mutation is an S1444N substitution at a putative protein kinase C phosphorylation site. UNC-68 reduced unc-103(sy557)-induced spicule protraction by one half. unc-68 is orthologous to the human genes RYR1 (OMIM:180901, mutated in malignant hyperthermia and central core disease), RYR2 (OMIM:180902, mutated in stress-induced polymorphic ventricular tachycardia), and RYR3 (OMIM:180903). [Source: WormBase] BY ORTHOLOGY TO:K11C4.5
14.6522 -14.6 0.00942702 1300 4 2 8 [+] picture button
CBG21257 ENSCBRT00000000767 BolA-like protein 2. [Source:Uniprot/SWISSPROT;Acc:Q9H3K6] [from human gene ENSG00000169627]BolA-like protein 2. [Source:Uniprot/SWISSPROT;Acc:Q9H3K6] [from human gene ENSG00000169627] BY ORTHOLOGY TO:ENSXETT00000028006
16.7119 -23.33 0.010787 1300 3 1 5 [+] picture button
ENSCBRT00000009649 carbon catabolite repressor proteincarbon catabolite repressor protein BY ORTHOLOGY TO:AAEL002836-RA
16.6733 -21.59 0.0112232 1300 2 1 2 [+] picture button
CBG09601 ENSCBRT00000005861 Cdc-42 Related Protein family member (crp-1) [Source:RefSeq_peptide;Acc:NP_505688]Cdc-42 Related Protein family member (crp-1) [Source:RefSeq_peptide;Acc:NP_505688] BY ORTHOLOGY TO:Y32F6B.3
16.668 -18.68 0.0112839 1300 3 1 7 [+] picture button

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