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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cel-miR-63

189 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG16137 ENSCBRT00000012576 Tubulin beta-4 chain (Beta-4 tubulin). [Source:Uniprot/SWISSPROT;Acc:P41937]Tubulin beta-4 chain (Beta-4 tubulin). [Source:Uniprot/SWISSPROT;Acc:P41937] BY ORTHOLOGY TO:B0272.1
17.1613 -18.52 1e-06 1300 3 1 4 [+] picture button
CBG24228 ENSCBRT00000005499 Serpentine Receptor, class X family member (srx-120) [Source:RefSeq_peptide;Acc:NP_496677]Serpentine Receptor, class X family member (srx-120) [Source:RefSeq_peptide;Acc:NP_496677] BY ORTHOLOGY TO:F49C5.2
16.669 -16.14 0.000340989 1300 6 1 9 [+] picture button
CBG10881 ENSCBRT00000001287 Max-binding protein MNT (Protein ROX) (Myc antagonist MNT). [Source:Uniprot/SWISSPROT;Acc:Q99583]Max-binding protein MNT (Protein ROX) (Myc antagonist MNT). [Source:Uniprot/SWISSPROT;Acc:Q99583] BY ORTHOLOGY TO:ENSOANT00000013762
15.2684 -21.11 0.000633038 1300 6 2 8 [+] picture button
CBG18269 ENSCBRT00000001671 R08H2.10 [Source:RefSeq_peptide;Acc:NP_506815]R08H2.10 [Source:RefSeq_peptide;Acc:NP_506815] BY ORTHOLOGY TO:R08H2.10
15.9537 -20.1 0.000636576 1300 4 1 4 [+] picture button
CBG13287 ENSCBRT00000001051 Y47D3B.4 [Source:RefSeq_peptide;Acc:NP_499469]Y47D3B.4 [Source:RefSeq_peptide;Acc:NP_499469] BY ORTHOLOGY TO:Y47D3B.4
16.008 -25.76 0.000837468 1300 4 1 6 [+] picture button
CBG00532 ENSCBRT00000003070 T22C8.5 [Source:RefSeq_peptide;Acc:NP_495833]T22C8.5 [Source:RefSeq_peptide;Acc:NP_495833] BY ORTHOLOGY TO:T22C8.5
17.3921 -21 0.00116864 1300 6 1 7 [+] picture button
CBG23650 ENSCBRT00000002702 E03H12.2 [Source:RefSeq_peptide;Acc:NP_500693]E03H12.2 [Source:RefSeq_peptide;Acc:NP_500693] BY ORTHOLOGY TO:E03H12.2
15.786 -17.02 0.00182249 1300 1 2 2 [+] picture button
CBG10898 ENSCBRT00000001278 RGD1304878 protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q5EBA2]RGD1304878 protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q5EBA2] BY ORTHOLOGY TO:ENSRNOT00000006131
16.3164 -20.98 0.00207793 1300 3 1 6 [+] picture button
CBG14733 ENSCBRT00000006784 W01C8.5 [Source:RefSeq_peptide;Acc:NP_508959]W01C8.5 [Source:RefSeq_peptide;Acc:NP_508959] BY ORTHOLOGY TO:W01C8.5
16.3079 -19.96 0.00228163 1300 3 1 8 [+] picture button
CBG13885 ENSCBRT00000013661 C54E4.4 [Source:RefSeq_peptide;Acc:NP_500172]C54E4.4 [Source:RefSeq_peptide;Acc:NP_500172] BY ORTHOLOGY TO:C54E4.4
15.2875 -21.09 0.00232031 1300 4 1 6 [+] picture button
CBG21774 ENSCBRT00000004669 fem-3 encodes a novel protein that promotes male development in all tissues. [Source: WormBase]fem-3 encodes a novel protein that promotes male development in all tissues. [Source: WormBase] BY ORTHOLOGY TO:C01F6.4
15.6064 -18.95 0.00246874 1300 2 2 6 [+] picture button
CBG12065 ENSCBRT00000011660 RIKEN cDNA 4921504I05 gene [Source:MarkerSymbol;Acc:MGI:1913957]RIKEN cDNA 4921504I05 gene [Source:MarkerSymbol;Acc:MGI:1913957] BY ORTHOLOGY TO:ENSMUST00000068235
15.8503 -14.96 0.00258415 1300 8 2 10 [+] picture button
CBG02095 ENSCBRT00000004173 syg-1 encodes a novel transmembrane protein that is a member of the immunoglobulin superfamily of proteins. during larval development, SYG-1 activity is required cell autonomously within the HSNL neuron to specify proper synaptic specificity with its targets, such as vulval muscles and the VC neuron. in regulating synapse formation, SYG-1 acts as a receptor for a second immunoglobulin superfamily protein, SYG-2, a synaptic guidepost protein that interacts with SYG-1 and whose activity is essential for proper SYG-1 localization in HSNL. expression of a SYG-1::GFP reporter fusion in HSNL under the control of the unc-86 promoter reveals that SYG-1 localizes to axons and accumulates at future sites of synaptic vesicle clustering, while expression under an endogenous reporter reveals weak expression in head motorneurons, occasionally in HSN neurons, and in other cells in the vulval region. [Source: WormBase]syg-1 encodes a novel transmembrane protein that is a member of the immunoglobulin superfamily of proteins. during larval development, SYG-1 activity is required cell autonomously within the HSNL neuron to specify proper synaptic specificity with its targets, such as vulval muscles and the VC neuron. in regulating synapse formation, SYG-1 acts as a receptor for a second immunoglobulin superfamily protein, SYG-2, a synaptic guidepost protein that interacts with SYG-1 and whose activity is essential for proper SYG-1 localization in HSNL. expression of a SYG-1::GFP reporter fusion in HSNL under the control of the unc-86 promoter reveals that SYG-1 localizes to axons and accumulates at future sites of synaptic vesicle clustering, while expression under an endogenous reporter reveals weak expression in head motorneurons, occasionally in HSN neurons, and in other cells in the vulval region. [Source: WormBase] BY ORTHOLOGY TO:K02E10.8
15.5887 -18.33 0.00283864 1300 7 2 12 [+] picture button
CBG18919 ENSCBRT00000014164 F13H6.1 [Source:RefSeq_peptide;Acc:NP_504620]F13H6.1 [Source:RefSeq_peptide;Acc:NP_504620] BY ORTHOLOGY TO:F13H6.1
15.2425 -22.36 0.00304011 1300 7 1 13 [+] picture button
CBG22153 ENSCBRT00000004282 Y71G12B.11a [Source:RefSeq_peptide;Acc:NP_490886]Y71G12B.11a [Source:RefSeq_peptide;Acc:NP_490886] BY ORTHOLOGY TO:Y71G12B.11a
15.6783 -16.26 0.00310608 1300 4 1 5 [+] picture button
CBG07597 ENSCBRT00000011123 mbk-1 encodes a putative dual-specificity kinase (predicted to have both serine/threonine and tyrosine substrates) that is orthologous to Drosophila MINIBRAIN and mammalian DYRK1A/MnbK and that has a glutamine/asparagine-rich domain. MBK-1 is found in most or all nuclei, is dispensable for viability, and perturbs olfaction in AWC when overexpressed. [Source: WormBase]mbk-1 encodes a putative dual-specificity kinase (predicted to have both serine/threonine and tyrosine substrates) that is orthologous to Drosophila MINIBRAIN and mammalian DYRK1A/MnbK and that has a glutamine/asparagine-rich domain. MBK-1 is found in most or all nuclei, is dispensable for viability, and perturbs olfaction in AWC when overexpressed. [Source: WormBase] BY ORTHOLOGY TO:T04C10.1
16.2186 -17.66 0.00316544 1300 10 1 14 [+] picture button
CBG07579 ENSCBRT00000011135 F33C8.4 [Source:RefSeq_peptide;Acc:NP_510446]F33C8.4 [Source:RefSeq_peptide;Acc:NP_510446] BY ORTHOLOGY TO:F33C8.4
15.5205 -17.88 0.00330869 1300 3 1 5 [+] picture button
CBG19019 ENSCBRT00000014082 Germinal Center Kinase family member (gck-2) [Source:RefSeq_peptide;Acc:NP_504721]Germinal Center Kinase family member (gck-2) [Source:RefSeq_peptide;Acc:NP_504721] BY ORTHOLOGY TO:ZC404.9
17.3198 -20.22 0.0033485 1300 6 2 7 [+] picture button
CBG01105 ENSCBRT00000005254 W07B8.3 [Source:RefSeq_peptide;Acc:NP_503381]W07B8.3 [Source:RefSeq_peptide;Acc:NP_503381] BY ORTHOLOGY TO:W07B8.3
15.7304 -16.75 0.00344684 1300 4 1 6 [+] picture button
CBG12413 ENSCBRT00000013156 F32H2.7 [Source:RefSeq_peptide;Acc:NP_492420]F32H2.7 [Source:RefSeq_peptide;Acc:NP_492420] BY ORTHOLOGY TO:F32H2.7
15.6549 -24.72 0.00345346 1300 8 2 10 [+] picture button
CBG07245 ENSCBRT00000011847 C11H1.5 [Source:RefSeq_peptide;Acc:NP_510387]C11H1.5 [Source:RefSeq_peptide;Acc:NP_510387] BY ORTHOLOGY TO:C11H1.5
15.4515 -24.64 0.00349951 1300 4 1 4 [+] picture button
CBG17297 ENSCBRT00000001257 NIK and IKK(beta) binding protein [Source:RefSeq_peptide;Acc:NP_113654]NIK and IKK(beta) binding protein [Source:RefSeq_peptide;Acc:NP_113654] BY ORTHOLOGY TO:SINFRUT00000149577
15.5326 -27.21 0.00365915 1300 4 1 5 [+] picture button
CBG09958 ENSCBRT00000008118 gpdh-2 encodes one of two C. elegans glycerol 3-phosphate dehydrogenases. although loss of gpdh-2 activity via large-scale RNAi screens results in no obvious defects, expression of a gpdh-2 cDNA in Saccharomyces cerevisiae hog1 mutants is able to rescue the high osmolarity-sensitive growth phenotype of these mutants, suggesting that gpdh-2 encodes a functional glycerol 3-phosphate dehydrogenase. [Source: WormBase]gpdh-2 encodes one of two C. elegans glycerol 3-phosphate dehydrogenases. although loss of gpdh-2 activity via large-scale RNAi screens results in no obvious defects, expression of a gpdh-2 cDNA in Saccharomyces cerevisiae hog1 mutants is able to rescue the high osmolarity-sensitive growth phenotype of these mutants, suggesting that gpdh-2 encodes a functional glycerol 3-phosphate dehydrogenase. [Source: WormBase] BY ORTHOLOGY TO:K11H3.1a
15.3742 -13.62 0.00399942 1300 1 1 1 [+] picture button
CBG15996 ENSCBRT00000014248 F31B9.1 [Source:RefSeq_peptide;Acc:NP_510612]F31B9.1 [Source:RefSeq_peptide;Acc:NP_510612] BY ORTHOLOGY TO:F31B9.1
16.7405 -21.78 0.00400765 1300 4 1 6 [+] picture button
CBG05782 ENSCBRT00000009112 COLlagen family member (col-113) [Source:RefSeq_peptide;Acc:NP_501123]COLlagen family member (col-113) [Source:RefSeq_peptide;Acc:NP_501123] BY ORTHOLOGY TO:C34D4.15
15.2684 -14.37 0.00416205 1300 3 1 3 [+] picture button
CBG01053 ENSCBRT00000002306 Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase wee-1.3 (EC 2.7.11.1) (Myt1 kinase) (Lethal protein 37). [Source:Uniprot/SWISSPROT;Acc:O18209]Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase wee-1.3 (EC 2.7.11.1) (Myt1 kinase) (Lethal protein 37). [Source:Uniprot/SWISSPROT;Acc:O18209] BY ORTHOLOGY TO:Y53C12A.1
15.9919 -18.05 0.00444744 1300 3 1 7 [+] picture button
CBG07053 ENSCBRT00000012421 Calcium BiNding protein homolog family member (cbn-1) [Source:RefSeq_peptide;Acc:NP_001022226]Calcium BiNding protein homolog family member (cbn-1) [Source:RefSeq_peptide;Acc:NP_001022226] BY ORTHOLOGY TO:K01A2.11a
15.365 -17.43 0.00456586 1300 2 1 4 [+] picture button
CBG00303 ENSCBRT00000000300 gld-1 encodes a protein containing a K homology RNA binding domain that is required for meiotic cell cycle progression during oogenesis in parallel with gld-2, and also affects spermatogenesis. it physically interacts with its putative mRNA targets in vitro and with FOG-2, and is expressed in the cytoplasm at high levels during meiotic prophase. [Source: WormBase]gld-1 encodes a protein containing a K homology RNA binding domain that is required for meiotic cell cycle progression during oogenesis in parallel with gld-2, and also affects spermatogenesis. it physically interacts with its putative mRNA targets in vitro and with FOG-2, and is expressed in the cytoplasm at high levels during meiotic prophase. [Source: WormBase] BY ORTHOLOGY TO:T23G11.3
15.3111 -15.12 0.00461155 1300 3 1 5 [+] picture button
CBG16609 ENSCBRT00000014544 K04G7.1 [Source:RefSeq_peptide;Acc:NP_498567]K04G7.1 [Source:RefSeq_peptide;Acc:NP_498567] BY ORTHOLOGY TO:K04G7.1
16.2183 -17.01 0.00463413 1300 8 1 14 [+] picture button
CBG16500 ENSCBRT00000014620 F11H8.2 [Source:RefSeq_peptide;Acc:NP_498532]F11H8.2 [Source:RefSeq_peptide;Acc:NP_498532] BY ORTHOLOGY TO:F11H8.2
15.2684 -19.34 0.00470212 1300 5 2 7 [+] picture button
CBG19035 ENSCBRT00000014070 gpa-10 encodes a member of the G protein alpha subunit family of heterotrimeric GTPases. it is expressed in ADF, ASI, ASJ, ALN, CAN, LUA, and the spermatheca. [Source: WormBase]gpa-10 encodes a member of the G protein alpha subunit family of heterotrimeric GTPases. it is expressed in ADF, ASI, ASJ, ALN, CAN, LUA, and the spermatheca. [Source: WormBase] BY ORTHOLOGY TO:C55H1.2
15.257 -16.63 0.0048045 1300 4 1 8 [+] picture button
CBG19119 ENSCBRT00000013889 Serpentine Receptor, class SX family member (srsx-32) [Source:RefSeq_peptide;Acc:NP_504778]Serpentine Receptor, class SX family member (srsx-32) [Source:RefSeq_peptide;Acc:NP_504778] BY ORTHOLOGY TO:F20A1.3
15.3742 -20.35 0.00559555 1300 2 2 2 [+] picture button
CBG15250 ENSCBRT00000010424 Shwachman-Bodian-Diamond syndrome [Source:RefSeq_peptide;Acc:NP_001006211]Shwachman-Bodian-Diamond syndrome [Source:RefSeq_peptide;Acc:NP_001006211] BY ORTHOLOGY TO:ENSGALT00000001658
15.1718 -22.15 0.00563809 1300 3 1 5 [+] picture button
CBG21460 ENSCBRT00000002723 chaperoninchaperonin BY ORTHOLOGY TO:AAEL010063-RA
16.0281 -23.21 0.00572866 1300 3 1 4 [+] picture button
CBG23741 ENSCBRT00000004467 CG18271-PA [Source:RefSeq_peptide;Acc:NP_649484]CG18271-PA [Source:RefSeq_peptide;Acc:NP_649484] BY ORTHOLOGY TO:CG18271-RA
15.7001 -19.2 0.00578981 1300 7 1 9 [+] picture button
CBG14473 ENSCBRT00000003529 Niemann-Pick C1 protein precursor. [Source:Uniprot/SWISSPROT;Acc:O15118]Niemann-Pick C1 protein precursor. [Source:Uniprot/SWISSPROT;Acc:O15118] BY ORTHOLOGY TO:ENSOANT00000019309
15.1831 -14.93 0.00603927 1300 4 2 7 [+] picture button
CBG02659 ENSCBRT00000007499 Diacylglycerol kinase zeta (EC 2.7.1.107) (Diglyceride kinase zeta) (DGK-zeta) (DAG kinase zeta). [Source:Uniprot/SWISSPROT;Acc:Q13574]Diacylglycerol kinase zeta (EC 2.7.1.107) (Diglyceride kinase zeta) (DGK-zeta) (DAG kinase zeta). [Source:Uniprot/SWISSPROT;Acc:Q13574] BY ORTHOLOGY TO:ENSMMUT00000030187
15.4732 -16.42 0.0060995 1300 1 1 1 [+] picture button
ENSCBRT00000004215 C47D2.1 [Source:RefSeq_peptide;Acc:NP_509385]C47D2.1 [Source:RefSeq_peptide;Acc:NP_509385] BY ORTHOLOGY TO:C47D2.1
17.7147 -25.61 0.00613146 1300 3 1 7 [+] picture button
CBG00661 ENSCBRT00000003223 PUF (Pumilio/FBF) domain-containing family member (puf-5) [Source:RefSeq_peptide;Acc:NP_495814]PUF (Pumilio/FBF) domain-containing family member (puf-5) [Source:RefSeq_peptide;Acc:NP_495814] BY ORTHOLOGY TO:F54C9.8
15.2559 -15.31 0.00617137 1300 6 1 6 [+] picture button
CBG09476 ENSCBRT00000006260 F15B9.5 [Source:RefSeq_peptide;Acc:NP_506254]F15B9.5 [Source:RefSeq_peptide;Acc:NP_506254] BY ORTHOLOGY TO:F15B9.5
17.7019 -28.23 0.00621105 1300 7 2 14 [+] picture button
CBG14497 ENSCBRT00000003498 C05E11.3 [Source:RefSeq_peptide;Acc:NP_508785]C05E11.3 [Source:RefSeq_peptide;Acc:NP_508785] BY ORTHOLOGY TO:C05E11.3
15.6309 -16.72 0.00662361 1300 6 1 9 [+] picture button
CBG03383 ENSCBRT00000007145 sarcolemma associated protein [Source:MarkerSymbol;Acc:MGI:1933549]sarcolemma associated protein [Source:MarkerSymbol;Acc:MGI:1933549] BY ORTHOLOGY TO:ENSMUST00000090359
15.0751 -15.45 0.00675087 1300 1 1 3 [+] picture button
CBG14717 ENSCBRT00000006788 Serpentine Receptor, class V family member (srv-7) [Source:RefSeq_peptide;Acc:NP_508950]Serpentine Receptor, class V family member (srv-7) [Source:RefSeq_peptide;Acc:NP_508950] BY ORTHOLOGY TO:T22B7.5
16.1957 -20.04 0.00683217 1300 5 1 10 [+] picture button
CBG17366 ENSCBRT00000001155 Nuclear Hormone Receptor family member (nhr-33) [Source:RefSeq_peptide;Acc:NP_509893]Nuclear Hormone Receptor family member (nhr-33) [Source:RefSeq_peptide;Acc:NP_509893] BY ORTHOLOGY TO:ZK455.6
15.0496 -15.08 0.00707862 1300 4 2 5 [+] picture button
CBG19329 ENSCBRT00000013513 T06E4.6 [Source:RefSeq_peptide;Acc:NP_505484]T06E4.6 [Source:RefSeq_peptide;Acc:NP_505484] BY ORTHOLOGY TO:T06E4.6
17.5028 -21.5 0.00759013 1300 3 1 6 [+] picture button
CBG22761 ENSCBRT00000004243 The ced-8 gene encodes a homolog of the human putative membrane transporter XK. ced-8 is required for apoptosis to occur with normal speed during embryonic development. [Source: WormBase]The ced-8 gene encodes a homolog of the human putative membrane transporter XK. ced-8 is required for apoptosis to occur with normal speed during embryonic development. [Source: WormBase] BY ORTHOLOGY TO:F08F1.5
15.6939 -18.55 0.00799833 1300 7 1 8 [+] picture button
CBG04273 ENSCBRT00000007665 C-type LECtin family member (clec-66) [Source:RefSeq_peptide;Acc:NP_496746]C-type LECtin family member (clec-66) [Source:RefSeq_peptide;Acc:NP_496746] BY ORTHOLOGY TO:F35C5.9
15.7824 -29.6 0.0080517 1300 2 2 2 [+] picture button
CBG11493 ENSCBRT00000013833 F20G2.2 [Source:RefSeq_peptide;Acc:NP_506407]F20G2.2 [Source:RefSeq_peptide;Acc:NP_506407] BY ORTHOLOGY TO:F20G2.2
14.969 -16.58 0.00821312 1300 2 2 2 [+] picture button
CBG17688 ENSCBRT00000002267 conserved hypothetical proteinconserved hypothetical protein BY ORTHOLOGY TO:AAEL005846-RA
15.8122 -17.51 0.00831279 1300 5 2 9 [+] picture button
CBG22082 ENSCBRT00000004325 Y34D9A.2 [Source:RefSeq_peptide;Acc:NP_490815]Y34D9A.2 [Source:RefSeq_peptide;Acc:NP_490815] BY ORTHOLOGY TO:Y34D9A.2
14.9548 -15.09 0.00842986 1300 2 1 4 [+] picture button

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