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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cel-miR-59

154 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG12809 ENSCBRT00000013688 C34B2.11 [Source:RefSeq_peptide;Acc:NP_492802]C34B2.11 [Source:RefSeq_peptide;Acc:NP_492802] BY ORTHOLOGY TO:C34B2.11
16.6357 -20.38 8.831e-05 1300 4 2 3 [+] picture button
CBG03145 ENSCBRT00000006920 Alpha-centractin (Centractin) (Centrosome-associated actin homolog) (Actin-RPV) (ARP1). [Source:Uniprot/SWISSPROT;Acc:P61163]Alpha-centractin (Centractin) (Centrosome-associated actin homolog) (Actin-RPV) (ARP1). [Source:Uniprot/SWISSPROT;Acc:P61163] BY ORTHOLOGY TO:ENST00000369905
18.2333 -20.81 0.00013625 1300 1 1 1 [+] picture button
CBG15251 ENSCBRT00000010427 cysteine-rich hydrophobic domain 2 (chic1)cysteine-rich hydrophobic domain 2 (chic1) BY ORTHOLOGY TO:AAEL008924-RA
16.6028 -23.44 0.000333771 1300 2 1 1 [+] picture button
CBG17737 ENSCBRT00000000177 Y42H9B.3 [Source:RefSeq_peptide;Acc:NP_501340]Y42H9B.3 [Source:RefSeq_peptide;Acc:NP_501340] BY ORTHOLOGY TO:Y42H9B.3
16.6556 -19.39 0.000670194 1300 2 1 2 [+] picture button
CBG08795 ENSCBRT00000000556 K03B4.2 [Source:RefSeq_peptide;Acc:NP_504262]K03B4.2 [Source:RefSeq_peptide;Acc:NP_504262] BY ORTHOLOGY TO:K03B4.2
16.2515 -22.07 0.00103486 1300 4 1 3 [+] picture button
CBG03823 ENSCBRT00000008673 Cd63 antigen [Source:MarkerSymbol;Acc:MGI:99529]Cd63 antigen [Source:MarkerSymbol;Acc:MGI:99529] BY ORTHOLOGY TO:ENSMUST00000026407
16.1186 -25.7 0.00135666 1300 5 1 3 [+] picture button
CBG05647 ENSCBRT00000005432 Serine/threonine protein kinase 11 (EC 2.7.11.1) (Serine/threonine- protein kinase LKB1). [Source:Uniprot/SWISSPROT;Acc:Q0GGW5]Serine/threonine protein kinase 11 (EC 2.7.11.1) (Serine/threonine- protein kinase LKB1). [Source:Uniprot/SWISSPROT;Acc:Q0GGW5] BY ORTHOLOGY TO:ENSGALT00000004248
19.2545 -34.58 0.00140325 1300 6 1 6 [+] picture button
CBG04341 ENSCBRT00000007704 ubiquitin specific protease 39 and snrnp assembly factorubiquitin specific protease 39 and snrnp assembly factor BY ORTHOLOGY TO:AAEL001827-RA
16.2837 -21.1 0.00145426 1300 5 1 5 [+] picture button
CBG13400 ENSCBRT00000009439 KIAA0020 (KIAA0020), mRNA [Source:RefSeq_dna;Acc:NM_014878]KIAA0020 (KIAA0020), mRNA [Source:RefSeq_dna;Acc:NM_014878] BY ORTHOLOGY TO:ENST00000382032
15.8611 -20.54 0.00154412 1300 2 1 1 [+] picture button
CBG21904 ENSCBRT00000008217 Histidine triad nucleotide-binding protein 2 (EC 3.-.-.-) (HINT-2) (HINT-3) (HIT-17kDa) (PKCI-1-related HIT protein). [Source:Uniprot/SWISSPROT;Acc:Q9BX68]Histidine triad nucleotide-binding protein 2 (EC 3.-.-.-) (HINT-2) (HINT-3) (HIT-17kDa) (PKCI-1-related HIT protein). [Source:Uniprot/SWISSPROT;Acc:Q9BX68] BY ORTHOLOGY TO:ENSMMUT00000022943
16.158 -18.39 0.00161856 1300 7 2 7 [+] picture button
CBG15014 ENSCBRT00000004394 Serpentine Receptor, class E (epsilon) family member (sre-4) [Source:RefSeq_peptide;Acc:NP_501746]Serpentine Receptor, class E (epsilon) family member (sre-4) [Source:RefSeq_peptide;Acc:NP_501746] BY ORTHOLOGY TO:T13F2.5
16.4953 -24.4 0.00184347 1300 4 1 4 [+] picture button
CBG21667 ENSCBRT00000004603 F38E11.6b [Source:RefSeq_peptide;Acc:NP_001023197]F38E11.6b [Source:RefSeq_peptide;Acc:NP_001023197] BY ORTHOLOGY TO:F38E11.6a
18.928 -23.78 0.00198704 1300 5 1 5 [+] picture button
CBG05064 ENSCBRT00000010259 K10C2.3 [Source:RefSeq_peptide;Acc:NP_509082]K10C2.3 [Source:RefSeq_peptide;Acc:NP_509082] BY ORTHOLOGY TO:K10C2.3
16.1174 -19.72 0.00201708 1300 3 1 2 [+] picture button
CBG03803 ENSCBRT00000008657 F26E4.5 [Source:RefSeq_peptide;Acc:NP_492594]F26E4.5 [Source:RefSeq_peptide;Acc:NP_492594] BY ORTHOLOGY TO:F26E4.5
16.3782 -23.58 0.00253118 1300 2 1 2 [+] picture button
CBG15713 ENSCBRT00000012001 TFIIH basal transcription factor complex helicase subunit (EC 3.6.1.-) (DNA-repair protein complementing XP-D cells) (Xeroderma pigmentosum group D-complementing protein) (CXPD) (DNA excision repair protein ERCC-2). [Source:Uniprot/SWISSPROT;Acc:P18074]TFIIH basal transcription factor complex helicase subunit (EC 3.6.1.-) (DNA-repair protein complementing XP-D cells) (Xeroderma pigmentosum group D-complementing protein) (CXPD) (DNA excision repair protein ERCC-2). [Source:Uniprot/SWISSPROT;Acc:P18074] BY ORTHOLOGY TO:ENSGACT00000016441
15.9686 -21.14 0.00276061 1300 6 1 5 [+] picture button
CBG21741 ENSCBRT00000004547 The unc-129 gene encodes a member of the TGF-beta family of secreted growth factor signaling molecules. UNC-129 is required for proper axonal guidance of commissural motorneurons and for proper migration of the distal tip cells of the somatic gonad. UNC-129 is expressed in dorsal body wall muscle and at present does not appear to act through the known TGF-beta type I and II receptors. [Source: WormBase]The unc-129 gene encodes a member of the TGF-beta family of secreted growth factor signaling molecules. UNC-129 is required for proper axonal guidance of commissural motorneurons and for proper migration of the distal tip cells of the somatic gonad. UNC-129 is expressed in dorsal body wall muscle and at present does not appear to act through the known TGF-beta type I and II receptors. [Source: WormBase] BY ORTHOLOGY TO:C53D6.2
15.7601 -17.53 0.00280225 1300 7 2 9 [+] picture button
CBG02455 ENSCBRT00000006527 D1081.5 [Source:RefSeq_peptide;Acc:NP_492299]D1081.5 [Source:RefSeq_peptide;Acc:NP_492299] BY ORTHOLOGY TO:D1081.5
16.0473 -18.73 0.00286827 1300 5 1 3 [+] picture button
CBG06264 ENSCBRT00000007066 C42C1.3 [Source:RefSeq_peptide;Acc:NP_502331]C42C1.3 [Source:RefSeq_peptide;Acc:NP_502331] BY ORTHOLOGY TO:C42C1.3
15.5824 -20.97 0.00329064 1300 5 2 5 [+] picture button
CBG01593 ENSCBRT00000005493 F35H10.10 [Source:RefSeq_peptide;Acc:NP_501400]F35H10.10 [Source:RefSeq_peptide;Acc:NP_501400] BY ORTHOLOGY TO:F35H10.10
16.2233 -21.43 0.00332808 1300 4 2 5 [+] picture button
CBG06986 ENSCBRT00000012355 COLlagen family member (col-68) [Source:RefSeq_peptide;Acc:NP_493660]COLlagen family member (col-68) [Source:RefSeq_peptide;Acc:NP_493660] BY ORTHOLOGY TO:C50D2.4
15.4529 -15.97 0.00350569 1300 5 2 4 [+] picture button
CBG22280 ENSCBRT00000003600 Y92H12A.4 [Source:RefSeq_peptide;Acc:NP_490863]Y92H12A.4 [Source:RefSeq_peptide;Acc:NP_490863] BY ORTHOLOGY TO:Y92H12A.4
16.1259 -17.35 0.00355451 1300 6 1 5 [+] picture button
CBG06707 ENSCBRT00000009719 H04M03.1 [Source:RefSeq_peptide;Acc:NP_500887]H04M03.1 [Source:RefSeq_peptide;Acc:NP_500887] BY ORTHOLOGY TO:H04M03.1
15.4439 -18.01 0.00357253 1300 5 1 4 [+] picture button
CBG01360 ENSCBRT00000002242 M02H5.8 [Source:RefSeq_peptide;Acc:NP_503206]M02H5.8 [Source:RefSeq_peptide;Acc:NP_503206] BY ORTHOLOGY TO:M02H5.8
16.6119 -19.91 0.00365893 1300 4 1 4 [+] picture button
CBG24408 ENSCBRT00000009780 Serpentine Receptor, class XA family member (srxa-7) [Source:RefSeq_peptide;Acc:NP_507119]Serpentine Receptor, class XA family member (srxa-7) [Source:RefSeq_peptide;Acc:NP_507119] BY ORTHOLOGY TO:C31A11.6
15.892 -18.5 0.00386027 1300 2 1 1 [+] picture button
CBG03713 ENSCBRT00000008596 Arginyl-tRNA--protein transferase 1 (EC 2.3.2.8) (R-transferase 1) (Arginyltransferase 1) (Arginine-tRNA--protein transferase 1). [Source:Uniprot/SWISSPROT;Acc:O95260]Arginyl-tRNA--protein transferase 1 (EC 2.3.2.8) (R-transferase 1) (Arginyltransferase 1) (Arginine-tRNA--protein transferase 1). [Source:Uniprot/SWISSPROT;Acc:O95260] BY ORTHOLOGY TO:ENSPTRT00000005735
18.2769 -29.24 0.00397284 1300 4 1 4 [+] picture button
CBG17205 ENSCBRT00000000490 F41E7.6 [Source:RefSeq_peptide;Acc:NP_509729]F41E7.6 [Source:RefSeq_peptide;Acc:NP_509729] BY ORTHOLOGY TO:F41E7.6
15.7895 -21.04 0.00410355 1300 5 1 5 [+] picture button
CBG12421 ENSCBRT00000013162 F36F2.1 [Source:RefSeq_peptide;Acc:NP_492426]F36F2.1 [Source:RefSeq_peptide;Acc:NP_492426] BY ORTHOLOGY TO:F36F2.1
15.882 -22.2 0.00412701 1300 2 1 2 [+] picture button
CBG18238 ENSCBRT00000001701 T05D4.4 [Source:RefSeq_peptide;Acc:NP_499806]T05D4.4 [Source:RefSeq_peptide;Acc:NP_499806] BY ORTHOLOGY TO:T05D4.4
15.8763 -18.34 0.00415555 1300 3 1 2 [+] picture button
CBG21753 ENSCBRT00000004542 DOMON domain-containing protein Y73F4A.2 precursor. [Source:Uniprot/SWISSPROT;Acc:Q9XWC3]DOMON domain-containing protein Y73F4A.2 precursor. [Source:Uniprot/SWISSPROT;Acc:Q9XWC3] BY ORTHOLOGY TO:Y73F4A.2
15.6628 -21.46 0.00437222 1300 3 1 3 [+] picture button
CBG12304 ENSCBRT00000013341 Hypothetical protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:A3KNM8]Hypothetical protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:A3KNM8] BY ORTHOLOGY TO:ENSDART00000062941
15.3385 -19.79 0.00440827 1300 3 2 2 [+] picture button
CBG22506 ENSCBRT00000006031 R05C11.3 encodes a calcium-transporting ATPase. large-scale RNAi screens indicate that R05C11.3 activity is required for locomotion and normal rates of postembryonic growth. [Source: WormBase]R05C11.3 encodes a calcium-transporting ATPase. large-scale RNAi screens indicate that R05C11.3 activity is required for locomotion and normal rates of postembryonic growth. [Source: WormBase] BY ORTHOLOGY TO:R05C11.3
16.2471 -22.48 0.0049702 1300 5 2 7 [+] picture button
CBG06255 ENSCBRT00000008198 Ankyrin repeat and SAM domain-containing protein 3. [Source:Uniprot/SWISSPROT;Acc:Q6ZW76]Ankyrin repeat and SAM domain-containing protein 3. [Source:Uniprot/SWISSPROT;Acc:Q6ZW76] BY ORTHOLOGY TO:ENST00000304283
16.395 -21.42 0.00504411 1300 1 1 1 [+] picture button
ENSCBRT00000006092 C09H10.7 [Source:RefSeq_peptide;Acc:NP_496381]C09H10.7 [Source:RefSeq_peptide;Acc:NP_496381] BY ORTHOLOGY TO:C09H10.7
15.6354 -21.32 0.00508472 1300 3 2 3 [+] picture button
CBG23799 ENSCBRT00000005462 Bardet-Biedl syndrome 5 protein. [Source:Uniprot/SWISSPROT;Acc:Q8N3I7]Bardet-Biedl syndrome 5 protein. [Source:Uniprot/SWISSPROT;Acc:Q8N3I7] BY ORTHOLOGY TO:SINFRUT00000174842
15.9137 -20.05 0.00535547 1300 3 1 3 [+] picture button
CBG12785 ENSCBRT00000013701 B0511.14a [Source:RefSeq_peptide;Acc:NP_492791]B0511.14a [Source:RefSeq_peptide;Acc:NP_492791] BY ORTHOLOGY TO:B0511.14a
15.4389 -17.64 0.00579016 1300 5 1 3 [+] picture button
CBG23705 ENSCBRT00000004150 Uncharacterized protein C14orf153 precursor. [Source:Uniprot/SWISSPROT;Acc:Q96IL0]Uncharacterized protein C14orf153 precursor. [Source:Uniprot/SWISSPROT;Acc:Q96IL0] BY ORTHOLOGY TO:ENSORLT00000022409
15.5995 -17.64 0.00762325 1300 1 2 1 [+] picture button
CBG12009 ENSCBRT00000011720 NOT ANNOTATED
15.3094 -17.91 0.00825735 1300 1 1 1 [+] picture button
CBG06869 ENSCBRT00000007303 This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins. [Source: WormBase]This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins. [Source: WormBase] BY ORTHOLOGY TO:F59B2.8
15.5525 -20.34 0.00830805 1300 4 1 4 [+] picture button
CBG06667 ENSCBRT00000009681 Y39H10A.4 [Source:RefSeq_peptide;Acc:NP_504036]Y39H10A.4 [Source:RefSeq_peptide;Acc:NP_504036] BY ORTHOLOGY TO:Y39H10A.4
15.2458 -22.5 0.00843747 1300 3 1 3 [+] picture button
CBG13204 ENSCBRT00000001114 CD2 antigen cytoplasmic tail-binding protein 2 (CD2 cytoplasmic domain-binding protein) (CD2 tail-binding protein). [Source:Uniprot/SWISSPROT;Acc:O95400]CD2 antigen cytoplasmic tail-binding protein 2 (CD2 cytoplasmic domain-binding protein) (CD2 tail-binding protein). [Source:Uniprot/SWISSPROT;Acc:O95400] BY ORTHOLOGY TO:ENSMMUT00000030734
15.2819 -16.91 0.00862048 1300 3 1 3 [+] picture button
CBG02174 ENSCBRT00000004198 Y102A11A.7 [Source:RefSeq_peptide;Acc:NP_508376]Y102A11A.7 [Source:RefSeq_peptide;Acc:NP_508376] BY ORTHOLOGY TO:Y102A11A.7
17.5164 -22.89 0.00890096 1300 3 1 3 [+] picture button
CBG13644 ENSCBRT00000002312 coiled-coil and C2 domain containing 1B [Source:RefSeq_peptide;Acc:NP_115825]coiled-coil and C2 domain containing 1B [Source:RefSeq_peptide;Acc:NP_115825] BY ORTHOLOGY TO:SINFRUT00000165221
15.4271 -19.5 0.00893153 1300 4 1 11 [+] picture button
CBG03400 ENSCBRT00000007163 4-aminobutyrate aminotransferase, mitochondrial precursor (EC 2.6.1.19) ((S)-3-amino-2-methylpropionate transaminase) (EC 2.6.1.22) (Gamma-amino-N-butyrate transaminase) (GABA transaminase) (GABA aminotransferase) (GABA-AT) (GABA-T) (L-AIBAT). [Source:Uniprot/SWISSPROT;Acc:P80404]4-aminobutyrate aminotransferase, mitochondrial precursor (EC 2.6.1.19) ((S)-3-amino-2-methylpropionate transaminase) (EC 2.6.1.22) (Gamma-amino-N-butyrate transaminase) (GABA transaminase) (GABA aminotransferase) (GABA-AT) (GABA-T) (L-AIBAT). [Source:Uniprot/SWISSPROT;Acc:P80404] BY ORTHOLOGY TO:SINFRUT00000150989
15.2344 -20.9 0.00897913 1300 2 1 2 [+] picture button
CBG23228 ENSCBRT00000012195 Uncharacterized protein C12orf4. [Source:Uniprot/SWISSPROT;Acc:Q9NQ89]Uncharacterized protein C12orf4. [Source:Uniprot/SWISSPROT;Acc:Q9NQ89] BY ORTHOLOGY TO:ENST00000261250
15.2203 -17.41 0.00927452 1300 3 2 6 [+] picture button
CBG23896 ENSCBRT00000007911 CG6854-PA, isoform A [Source:RefSeq_peptide;Acc:NP_730024]CG6854-PA, isoform A [Source:RefSeq_peptide;Acc:NP_730024] BY ORTHOLOGY TO:CG6854-RC
17.4316 -26.17 0.00973559 1300 4 1 6 [+] picture button
CBG08495 ENSCBRT00000000262 ATP-binding cassette sub-family B member 8, mitochondrial precursor (Mitochondrial ATP-binding cassette 1) (M-ABC1). [Source:Uniprot/SWISSPROT;Acc:Q9NUT2]ATP-binding cassette sub-family B member 8, mitochondrial precursor (Mitochondrial ATP-binding cassette 1) (M-ABC1). [Source:Uniprot/SWISSPROT;Acc:Q9NUT2] BY ORTHOLOGY TO:ENSMMUT00000028769
17.3164 -26.24 0.0109956 1300 7 1 7 [+] picture button
CBG13829 ENSCBRT00000012464 Y19D10B.2 [Source:RefSeq_peptide;Acc:NP_503631]Y19D10B.2 [Source:RefSeq_peptide;Acc:NP_503631] BY ORTHOLOGY TO:Y19D10B.2
17.23 -21.45 0.0120441 1300 3 1 4 [+] picture button
ENSCBRT00000011531 Serpentine Receptor, class W family member (srw-137) [Source:RefSeq_peptide;Acc:NP_503799]Serpentine Receptor, class W family member (srw-137) [Source:RefSeq_peptide;Acc:NP_503799] BY ORTHOLOGY TO:H27D07.4
17.1854 -21.73 0.012624 1300 2 1 2 [+] picture button
CBG21671 ENSCBRT00000004604 cng-3 is predicted to encode a cyclic nucleotide gated (CNG) channel that is required for wild-type thermotolerance. cng-3 is expressed in five sensory neurons, including the thermosensory neuron AFD. [Source: WormBase]cng-3 is predicted to encode a cyclic nucleotide gated (CNG) channel that is required for wild-type thermotolerance. cng-3 is expressed in five sensory neurons, including the thermosensory neuron AFD. [Source: WormBase] BY ORTHOLOGY TO:F38E11.12
17.1751 -22.58 0.0127617 1300 3 1 3 [+] picture button
CBG03473 ENSCBRT00000007218 lethal (2) 35Df CG4152-PA [Source:RefSeq_peptide;Acc:NP_524929]lethal (2) 35Df CG4152-PA [Source:RefSeq_peptide;Acc:NP_524929] BY ORTHOLOGY TO:CG4152-RA
17.1554 -24.37 0.0130295 1300 4 1 4 [+] picture button

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