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Target Listing


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Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cel-miR-265

80 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG01474 ENSCBRT00000001889 smk-1 encodes a novel, evolutionarily conserved protein that is orthologous to the mammalian and Dictyostelium discoideum SMEK (suppressor of MEK null) proteins. smk-1 activity is essential for several aspects of DAF-16-mediated longevity namely, the defense response to pathogenic bacteria and increased resistance to oxidative and UV-induced damage. in regulating DAF-16 activity, SMK-1 appears to act by affecting the transcription of DAF-16 target genes, such as sod-3, ctl-1, and lys-8. SMK-1 is present in the nucleus of intestinal cells, many head and tail neurons, and some hypodermal cells throughout development. [Source: WormBase]smk-1 encodes a novel, evolutionarily conserved protein that is orthologous to the mammalian and Dictyostelium discoideum SMEK (suppressor of MEK null) proteins. smk-1 activity is essential for several aspects of DAF-16-mediated longevity namely, the defense response to pathogenic bacteria and increased resistance to oxidative and UV-induced damage. in regulating DAF-16 activity, SMK-1 appears to act by affecting the transcription of DAF-16 target genes, such as sod-3, ctl-1, and lys-8. SMK-1 is present in the nucleus of intestinal cells, many head and tail neurons, and some hypodermal cells throughout development. [Source: WormBase] BY ORTHOLOGY TO:F41E6.4a
16.649 -24.24 0.00137742 1300 4 2 7 [+] picture button
CBG19773 ENSCBRT00000000371 R08A2.1 [Source:RefSeq_peptide;Acc:NP_506634]R08A2.1 [Source:RefSeq_peptide;Acc:NP_506634] BY ORTHOLOGY TO:R08A2.1
16.7386 -30.29 0.00142326 1300 4 1 3 [+] picture button
CBG16516 ENSCBRT00000014612 Transmembrane protein 147 (Protein NIFIE 14). [Source:Uniprot/SWISSPROT;Acc:Q9BVK8]Transmembrane protein 147 (Protein NIFIE 14). [Source:Uniprot/SWISSPROT;Acc:Q9BVK8] BY ORTHOLOGY TO:SINFRUT00000142719
16.1747 -23.15 0.00281336 1300 4 1 3 [+] picture button
CBG00981 ENSCBRT00000002189 CDNA: FLJ23205 fis, clone ADSE00359. [Source:Uniprot/SPTREMBL;Acc:Q9H5P5]CDNA: FLJ23205 fis, clone ADSE00359. [Source:Uniprot/SPTREMBL;Acc:Q9H5P5] BY ORTHOLOGY TO:ENSOANT00000013537
17.0897 -25.68 0.00331156 1300 2 1 1 [+] picture button
CBG22648 ENSCBRT00000009842 Serpentine Receptor, class X family member (srx-43) [Source:RefSeq_peptide;Acc:NP_507022]Serpentine Receptor, class X family member (srx-43) [Source:RefSeq_peptide;Acc:NP_507022] BY ORTHOLOGY TO:T10C6.3
19.1742 -35.02 0.0033262 1300 4 1 5 [+] picture button
CBG14672 ENSCBRT00000006865 Profilin-2. [Source:Uniprot/SWISSPROT;Acc:Q20025]Profilin-2. [Source:Uniprot/SWISSPROT;Acc:Q20025] BY ORTHOLOGY TO:F35C8.6
16.7576 -26.05 0.00347981 1300 7 1 6 [+] picture button
CBG17768 ENSCBRT00000000204 C16C8.2 [Source:RefSeq_peptide;Acc:NP_494540]C16C8.2 [Source:RefSeq_peptide;Acc:NP_494540] BY ORTHOLOGY TO:C16C8.2
16.1645 -21.04 0.00350959 1300 5 2 6 [+] picture button
CBG23524 ENSCBRT00000011613 F45D3.3 [Source:RefSeq_peptide;Acc:NP_506142]F45D3.3 [Source:RefSeq_peptide;Acc:NP_506142] BY ORTHOLOGY TO:F45D3.3
16.6742 -27.7 0.00356787 1300 3 2 3 [+] picture button
CBG13229 ENSCBRT00000001092 Y41C4A.18 [Source:RefSeq_peptide;Acc:NP_871686]Y41C4A.18 [Source:RefSeq_peptide;Acc:NP_871686] BY ORTHOLOGY TO:Y41C4A.18
19.0738 -35.02 0.00368566 1300 4 1 3 [+] picture button
CBG08795 ENSCBRT00000000556 K03B4.2 [Source:RefSeq_peptide;Acc:NP_504262]K03B4.2 [Source:RefSeq_peptide;Acc:NP_504262] BY ORTHOLOGY TO:K03B4.2
17.0676 -29.4 0.00388689 1300 4 1 3 [+] picture button
CBG12042 ENSCBRT00000011682 T20F5.5 [Source:RefSeq_peptide;Acc:NP_491265]T20F5.5 [Source:RefSeq_peptide;Acc:NP_491265] BY ORTHOLOGY TO:T20F5.5
16.5717 -24.2 0.00410699 1300 2 1 1 [+] picture button
CBG08277 ENSCBRT00000003477 Neuropeptide-Like Protein family member (nlp-8) [Source:RefSeq_peptide;Acc:NP_492158]Neuropeptide-Like Protein family member (nlp-8) [Source:RefSeq_peptide;Acc:NP_492158] BY ORTHOLOGY TO:D2005.2
16.2186 -26.53 0.00487172 1300 3 1 3 [+] picture button
CBG22669 ENSCBRT00000009781 W04C9.2 [Source:RefSeq_peptide;Acc:NP_490738]W04C9.2 [Source:RefSeq_peptide;Acc:NP_490738] BY ORTHOLOGY TO:W04C9.2
17.1373 -27.33 0.00513482 1300 1 1 1 [+] picture button
CBG24087 ENSCBRT00000010775 Nuclear hormone receptor family member nhr-19. [Source:Uniprot/SWISSPROT;Acc:Q09528]Nuclear hormone receptor family member nhr-19. [Source:Uniprot/SWISSPROT;Acc:Q09528] BY ORTHOLOGY TO:E02H1.7
16.399 -27.56 0.00516144 1300 6 2 11 [+] picture button
CBG14751 ENSCBRT00000006772 Twinkle protein, mitochondrial precursor (EC 3.6.1.-) (T7 gp4-like protein with intramitochondrial nucleoid localization) (T7-like mitochondrial DNA helicase) (Progressive external ophthalmoplegia 1 protein). [Source:Uniprot/SWISSPROT;Acc:Q96RR1]Twinkle protein, mitochondrial precursor (EC 3.6.1.-) (T7 gp4-like protein with intramitochondrial nucleoid localization) (T7-like mitochondrial DNA helicase) (Progressive external ophthalmoplegia 1 protein). [Source:Uniprot/SWISSPROT;Acc:Q96RR1] BY ORTHOLOGY TO:SINFRUT00000138729
16.164 -24.6 0.00529162 1300 4 1 4 [+] picture button
CBG00906 ENSCBRT00000003944 NFX1-type zinc finger-containing protein 1. [Source:Uniprot/SWISSPROT;Acc:Q9P2E3]NFX1-type zinc finger-containing protein 1. [Source:Uniprot/SWISSPROT;Acc:Q9P2E3] BY ORTHOLOGY TO:ENSORLT00000007663
16.1462 -22.62 0.00593805 1300 5 2 6 [+] picture button
CBG09833 ENSCBRT00000008011 LEThal family member (let-805) [Source:RefSeq_peptide;Acc:NP_001022641]LEThal family member (let-805) [Source:RefSeq_peptide;Acc:NP_001022641] BY ORTHOLOGY TO:H19M22.2c
15.9325 -28.32 0.00753112 1300 5 2 7 [+] picture button
CBG02651 ENSCBRT00000007496 T25D10.4 [Source:RefSeq_peptide;Acc:NP_495292]T25D10.4 [Source:RefSeq_peptide;Acc:NP_495292] BY ORTHOLOGY TO:T25D10.4
15.8887 -25.08 0.00960931 1300 1 2 1 [+] picture button
CBG24749 ENSCBRT00000008971 Y46H3B.1 [Source:RefSeq_peptide;Acc:NP_503500]Y46H3B.1 [Source:RefSeq_peptide;Acc:NP_503500] BY ORTHOLOGY TO:Y46H3B.1
17.9031 -27.95 0.01214 1300 3 1 3 [+] picture button
CBG15326 ENSCBRT00000009592 Putative zinc finger protein C06E1.8. [Source:Uniprot/SWISSPROT;Acc:P34303]Putative zinc finger protein C06E1.8. [Source:Uniprot/SWISSPROT;Acc:P34303] BY ORTHOLOGY TO:C06E1.8
17.9031 -29.9 0.01214 1300 1 1 1 [+] picture button
CBG10102 ENSCBRT00000007222 tkr-1 encodes a G protein-coupled receptor that is the C. elegans tachykinin-like neuropeptide receptor homolog. by homology, TKR-1 is predicted to function in modulation of excitatory neurotransmission. as loss of tkr-1 activity via RNAi results in moderate reduction of fat content, TKR-1 may play a specific role in regulating lipid metabolism. a tkr-1 reporter gene fusion is reportedly expressed in the socket cells of the deirid and post-deirid sensilla from the L2 larval stage through adulthood. [Source: WormBase]tkr-1 encodes a G protein-coupled receptor that is the C. elegans tachykinin-like neuropeptide receptor homolog. by homology, TKR-1 is predicted to function in modulation of excitatory neurotransmission. as loss of tkr-1 activity via RNAi results in moderate reduction of fat content, TKR-1 may play a specific role in regulating lipid metabolism. a tkr-1 reporter gene fusion is reportedly expressed in the socket cells of the deirid and post-deirid sensilla from the L2 larval stage through adulthood. [Source: WormBase] BY ORTHOLOGY TO:C38C10.1
15.8373 -21.3 0.0124364 1300 4 2 4 [+] picture button
CBG05270 ENSCBRT00000003872 Nuclear Hormone Receptor family member (nhr-32) [Source:RefSeq_peptide;Acc:NP_510201]Nuclear Hormone Receptor family member (nhr-32) [Source:RefSeq_peptide;Acc:NP_510201] BY ORTHOLOGY TO:K08H2.8
17.8454 -26.43 0.0128705 1300 5 2 10 [+] picture button
CBG03416 ENSCBRT00000007177 rasputin CG9412-PA, isoform A [Source:RefSeq_peptide;Acc:NP_731830]rasputin CG9412-PA, isoform A [Source:RefSeq_peptide;Acc:NP_731830] BY ORTHOLOGY TO:CG9412-RA
15.9357 -24.29 0.0130406 1300 1 1 1 [+] picture button
CBG15659 ENSCBRT00000011917 39S ribosomal protein L30, mitochondrial precursor (L30mt) (MRP-L30). [Source:Uniprot/SWISSPROT;Acc:Q8TCC3]39S ribosomal protein L30, mitochondrial precursor (L30mt) (MRP-L30). [Source:Uniprot/SWISSPROT;Acc:Q8TCC3] BY ORTHOLOGY TO:SINFRUT00000180866
17.7733 -32.79 0.0138444 1300 4 1 4 [+] picture button
CBG20406 ENSCBRT00000003634 Temporarily Assigned Gene name family member (tag-296) [Source:RefSeq_peptide;Acc:NP_492850]Temporarily Assigned Gene name family member (tag-296) [Source:RefSeq_peptide;Acc:NP_492850] BY ORTHOLOGY TO:F49D11.9a
17.6249 -32.43 0.0160838 1300 1 1 1 [+] picture button
CBG01857 ENSCBRT00000005697 Uncharacterized protein C6orf106 homolog. [Source:Uniprot/SWISSPROT;Acc:Q5BL31]Uncharacterized protein C6orf106 homolog. [Source:Uniprot/SWISSPROT;Acc:Q5BL31] BY ORTHOLOGY TO:ENSDART00000005714
16.5259 -29.54 0.0186882 1300 5 2 5 [+] picture button
CBG18323 ENSCBRT00000001626 T-cell activation protein phosphatase 2C [Source:RefSeq_peptide;Acc:NP_644812]T-cell activation protein phosphatase 2C [Source:RefSeq_peptide;Acc:NP_644812] BY ORTHOLOGY TO:ENSGALT00000007244
16.9907 -27.93 0.021706 1300 2 1 2 [+] picture button
CBG04419 ENSCBRT00000008910 C43F9.9 [Source:RefSeq_peptide;Acc:NP_001023062]C43F9.9 [Source:RefSeq_peptide;Acc:NP_001023062] BY ORTHOLOGY TO:C43F9.9
17.326 -31.21 0.0217255 1300 2 1 2 [+] picture button
CBG15655 ENSCBRT00000011915 H14E04.3 [Source:RefSeq_peptide;Acc:NP_497546]H14E04.3 [Source:RefSeq_peptide;Acc:NP_497546] BY ORTHOLOGY TO:H14E04.3
17.2798 -28.96 0.022756 1300 2 1 2 [+] picture button
CBG18595 ENSCBRT00000011196 acr-18 encodes an alpha subunit of nicotinic acetylcholine receptor (nAChR), predicted to be a ligand-gated ion channel regulating fast action of acetylcholine at neuromuscular junctions and in the nervous system. ACR-18 falls into the 'DEG-3' class of nAChR subunits, apparently unique to nematodes, which includes DEG-3, DES-2, ACR-5, ACR-17, ACR-20, and ACR-23. [Source: WormBase]acr-18 encodes an alpha subunit of nicotinic acetylcholine receptor (nAChR), predicted to be a ligand-gated ion channel regulating fast action of acetylcholine at neuromuscular junctions and in the nervous system. ACR-18 falls into the 'DEG-3' class of nAChR subunits, apparently unique to nematodes, which includes DEG-3, DES-2, ACR-5, ACR-17, ACR-20, and ACR-23. [Source: WormBase] BY ORTHOLOGY TO:F28F8.1
17.2328 -32.41 0.0238515 1300 2 1 2 [+] picture button
CBG19812 ENSCBRT00000000409 ZK337.2 [Source:RefSeq_peptide;Acc:NP_493611]ZK337.2 [Source:RefSeq_peptide;Acc:NP_493611] BY ORTHOLOGY TO:ZK337.2
17.2008 -22.21 0.0246296 1300 5 1 6 [+] picture button
CBG00871 ENSCBRT00000003963 CG14969-PA [Source:RefSeq_peptide;Acc:NP_647809]CG14969-PA [Source:RefSeq_peptide;Acc:NP_647809] BY ORTHOLOGY TO:CG14969-RA
17.1632 -26.82 0.0255729 1300 2 1 2 [+] picture button
CBG11852 ENSCBRT00000009331 DnaJ homolog subfamily C member 13 (Required for receptor-mediated endocytosis 8). [Source:Uniprot/SWISSPROT;Acc:O75165]DnaJ homolog subfamily C member 13 (Required for receptor-mediated endocytosis 8). [Source:Uniprot/SWISSPROT;Acc:O75165] BY ORTHOLOGY TO:ENSMODT00000014955
17.1622 -26.25 0.0255974 1300 2 1 2 [+] picture button
CBG04628 ENSCBRT00000010515 unc-39 encodes a homeodomain transcription factor that belongs to the Six4/5 family of homeodomain proteins that includes human Six5. UNC-39 is required for axonal pathfinding in anterior-derived neurons and for specification of most mesodermal cell types and may regulate a developmental decision between migration and differentiation. UNC-39 is expressed in the embryo in anterior neurons, posteriorly derived mesoderm (somatic gonad, M mesoblast, and possibly the coelomocytes and muIntR), the CAN neurons, and body wall muscle. [Source: WormBase]unc-39 encodes a homeodomain transcription factor that belongs to the Six4/5 family of homeodomain proteins that includes human Six5. UNC-39 is required for axonal pathfinding in anterior-derived neurons and for specification of most mesodermal cell types and may regulate a developmental decision between migration and differentiation. UNC-39 is expressed in the embryo in anterior neurons, posteriorly derived mesoderm (somatic gonad, M mesoblast, and possibly the coelomocytes and muIntR), the CAN neurons, and body wall muscle. [Source: WormBase] BY ORTHOLOGY TO:F56A12.1
17.1265 -26.95 0.0265258 1300 2 1 2 [+] picture button
CBG04112 ENSCBRT00000010091 lin-17 encodes one of four C. elegans Frizzled homologs, integral membrane proteins that contain an external cysteine rich domain (CRD) and seven transmembrane domains and that function in a wide variety of species as receptors for Wnt glycoprotein signaling molecules. LIN-17 activity is required for specifying the polarity of a number of asymmetric cell divisions that, in C. elegans, are essential for development of such structures as the vulva, somatic gonad, and tail. LIN-17 is also required for the proper polarity of neuronal migrations along the anterior-posterior axis. genetic interactions indicate that LIN-17 likely functions as a receptor for several different Wnt molecules, including LIN-44 and EGL-20, and that in specifying cell fates, the LIN-17-mediated signaling pathway often functions redundantly with other signaling pathways, including the RTK/Ras pathway. a LIN-17 translational reporter fusion shows membrane-associated expression in all of the Pn.pxx vulval precursor cells, in the descendants of V6 and T in males, in the P11.p and B cells, as well as their daughters, and granddaughters, and weakly in P10.p and its daughters. the reporter fusion does not reveal expression in P7.p, Z1, Z4, and T [Source: WormBase]lin-17 encodes one of four C. elegans Frizzled homologs, integral membrane proteins that contain an external cysteine rich domain (CRD) and seven transmembrane domains and that function in a wide variety of species as receptors for Wnt glycoprotein signaling molecules. LIN-17 activity is required for specifying the polarity of a number of asymmetric cell divisions that, in C. elegans, are essential for development of such structures as the vulva, somatic gonad, and tail. LIN-17 is also required for the proper polarity of neuronal migrations along the anterior-posterior axis. genetic interactions indicate that LIN-17 likely functions as a receptor for several different Wnt molecules, including LIN-44 and EGL-20, and that in specifying cell fates, the LIN-17-mediated signaling pathway often functions redundantly with other signaling pathways, including the RTK/Ras pathway. a LIN-17 translational reporter fusion shows membrane-associated expression in all of the Pn.pxx vulval precursor cells, in the descendants of V6 and T in males, in the P11.p and B cells, as well as their daughters, and granddaughters, and weakly in P10.p and its daughters. the reporter fusion does not reveal expression in P7.p, Z1, Z4, and T [Source: WormBase] BY ORTHOLOGY TO:Y71F9B.5a
17.1161 -29.3 0.0268027 1300 1 1 1 [+] picture button
CBG10849 ENSCBRT00000001370 Cathepsin B-like cysteine proteinase 6 precursor (EC 3.4.22.-) (Cysteine protease-related 6). [Source:Uniprot/SWISSPROT;Acc:P43510]Cathepsin B-like cysteine proteinase 6 precursor (EC 3.4.22.-) (Cysteine protease-related 6). [Source:Uniprot/SWISSPROT;Acc:P43510] BY ORTHOLOGY TO:C25B8.3a
17.0793 -28.38 0.0278065 1300 5 1 5 [+] picture button
CBG09494 ENSCBRT00000005989 R186.1 [Source:RefSeq_peptide;Acc:NP_506243]R186.1 [Source:RefSeq_peptide;Acc:NP_506243] BY ORTHOLOGY TO:R186.1
17.0636 -28.25 0.0282445 1300 4 1 4 [+] picture button
CBG00545 ENSCBRT00000003083 protein tyrosine phosphatase, mitochondrial 1 [Source:MarkerSymbol;Acc:MGI:1913711]protein tyrosine phosphatase, mitochondrial 1 [Source:MarkerSymbol;Acc:MGI:1913711] BY ORTHOLOGY TO:ENSMUST00000077874
17.0596 -28.37 0.028357 1300 2 1 2 [+] picture button
CBG00426 ENSCBRT00000001955 Y116A8C.43 [Source:RefSeq_peptide;Acc:NP_503028]Y116A8C.43 [Source:RefSeq_peptide;Acc:NP_503028] BY ORTHOLOGY TO:Y116A8C.43
17.0281 -25.08 0.0292601 1300 2 1 2 [+] picture button
CBG08080 ENSCBRT00000003514 Y60A3A.7 [Source:RefSeq_peptide;Acc:NP_507863]Y60A3A.7 [Source:RefSeq_peptide;Acc:NP_507863] BY ORTHOLOGY TO:Y60A3A.7
17.0106 -28.25 0.0297725 1300 2 1 2 [+] picture button
CBG16369 ENSCBRT00000011253 F01G12.6 [Source:RefSeq_peptide;Acc:NP_510666]F01G12.6 [Source:RefSeq_peptide;Acc:NP_510666] BY ORTHOLOGY TO:F01G12.6
16.9849 -23.14 0.0305439 1300 2 1 2 [+] picture button
CBG16362 ENSCBRT00000011249 phosphatidylinositol-specific phospholipase C, X domain containing 3 [Source:RefSeq_peptide;Acc:NP_001005473]phosphatidylinositol-specific phospholipase C, X domain containing 3 [Source:RefSeq_peptide;Acc:NP_001005473] BY ORTHOLOGY TO:ENST00000328457
16.9676 -30.72 0.0310746 1300 4 2 4 [+] picture button
CBG06663 ENSCBRT00000009678 W08A12.1b [Source:RefSeq_peptide;Acc:NP_504029]W08A12.1b [Source:RefSeq_peptide;Acc:NP_504029] BY ORTHOLOGY TO:W08A12.1a
16.9644 -28.91 0.0311744 1300 4 1 3 [+] picture button
CBG18365 ENSCBRT00000001586 UNCoordinated family member (unc-49) [Source:RefSeq_peptide;Acc:NP_001022781]UNCoordinated family member (unc-49) [Source:RefSeq_peptide;Acc:NP_001022781] BY ORTHOLOGY TO:T21C12.1a
16.9326 -20.73 0.0321714 1300 10 1 14 [+] picture button
CBG11274 ENSCBRT00000014508 F38E1.3 [Source:RefSeq_peptide;Acc:NP_505159]F38E1.3 [Source:RefSeq_peptide;Acc:NP_505159] BY ORTHOLOGY TO:F38E1.3
16.9309 -25.87 0.0322271 1300 8 1 7 [+] picture button
CBG10829 ENSCBRT00000012509 Y110A7A.7 [Source:RefSeq_peptide;Acc:NP_491528]Y110A7A.7 [Source:RefSeq_peptide;Acc:NP_491528] BY ORTHOLOGY TO:Y110A7A.7
16.9297 -21.21 0.0322665 1300 3 1 5 [+] picture button
CBG04729 ENSCBRT00000010558 K02E11.5 [Source:RefSeq_peptide;Acc:NP_506526]K02E11.5 [Source:RefSeq_peptide;Acc:NP_506526] BY ORTHOLOGY TO:K02E11.5
16.9194 -22.51 0.0325972 1300 4 1 4 [+] picture button
CBG10334 ENSCBRT00000009521 Y38E10A.20 [Source:RefSeq_peptide;Acc:NP_496703]Y38E10A.20 [Source:RefSeq_peptide;Acc:NP_496703] BY ORTHOLOGY TO:Y38E10A.20
16.8846 -28.42 0.033742 1300 4 1 5 [+] picture button
CBG14636 ENSCBRT00000003205 The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). [Source: WormBase]The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). [Source: WormBase] BY ORTHOLOGY TO:T03G11.1
16.8808 -28.42 0.0338665 1300 4 2 4 [+] picture button
CBG18458 ENSCBRT00000000984 R11F4.3 [Source:RefSeq_peptide;Acc:NP_494719]R11F4.3 [Source:RefSeq_peptide;Acc:NP_494719] BY ORTHOLOGY TO:R11F4.3
16.8716 -32.17 0.034177 1300 4 2 6 [+] picture button

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