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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cel-miR-264

150 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG24188 ENSCBRT00000004383 Apolipoprotein O-like precursor (Protein FAM121A). [Source:Uniprot/SWISSPROT;Acc:Q6UXV4]Apolipoprotein O-like precursor (Protein FAM121A). [Source:Uniprot/SWISSPROT;Acc:Q6UXV4] BY ORTHOLOGY TO:ENSXETT00000038623
16.4275 -21.48 0.000199407 1300 3 1 3 [+] picture button
CBG19693 ENSCBRT00000000078 Adhesion-regulating molecule 1 precursor (110 kDa cell membrane glycoprotein) (Gp110). [Source:Uniprot/SWISSPROT;Acc:Q16186]Adhesion-regulating molecule 1 precursor (110 kDa cell membrane glycoprotein) (Gp110). [Source:Uniprot/SWISSPROT;Acc:Q16186] BY ORTHOLOGY TO:ENSOANT00000005340
17.0786 -20.2 0.000592874 1300 7 2 15 [+] picture button
CBG06912 ENSCBRT00000007369 K02D10.5 [Source:RefSeq_peptide;Acc:NP_498940]K02D10.5 [Source:RefSeq_peptide;Acc:NP_498940] BY ORTHOLOGY TO:K02D10.5
16.7073 -21.95 0.00078575 1300 3 1 2 [+] picture button
CBG09348 ENSCBRT00000006363 C14C11.1 [Source:RefSeq_peptide;Acc:NP_504492]C14C11.1 [Source:RefSeq_peptide;Acc:NP_504492] BY ORTHOLOGY TO:C14C11.1
15.853 -26.42 0.000919164 1300 6 2 5 [+] picture button
CBG17652 ENSCBRT00000002201 R102.4b [Source:RefSeq_peptide;Acc:NP_501979]R102.4b [Source:RefSeq_peptide;Acc:NP_501979] BY ORTHOLOGY TO:R102.4a
15.335 -22.72 0.00119032 1300 4 1 3 [+] picture button
CBG10565 ENSCBRT00000007765 Y69A2AR.32a [Source:RefSeq_peptide;Acc:NP_741340]Y69A2AR.32a [Source:RefSeq_peptide;Acc:NP_741340] BY ORTHOLOGY TO:Y69A2AR.32a
15.3587 -20.89 0.00176162 1300 4 1 3 [+] picture button
CBG13523 ENSCBRT00000009347 ham-1 encodes a novel protein with a winged helix DNA-binding motif. ham-1 is required for the asymmetric divisions of several neuroblasts in the developing embryo and may influence their spindle position. ham-1 mutations also exhibit HSN motor neuron migration defects. HAM-1 interacts with itself in a yeast two-hybrid screen and observations suggest that its multimerization is required for its proper localization. HAM-1 is cytoplasmic and is asymmetrically distributed to the posterior of the HSNPHB neuroblast. [Source: WormBase]ham-1 encodes a novel protein with a winged helix DNA-binding motif. ham-1 is required for the asymmetric divisions of several neuroblasts in the developing embryo and may influence their spindle position. ham-1 mutations also exhibit HSN motor neuron migration defects. HAM-1 interacts with itself in a yeast two-hybrid screen and observations suggest that its multimerization is required for its proper localization. HAM-1 is cytoplasmic and is asymmetrically distributed to the posterior of the HSNPHB neuroblast. [Source: WormBase] BY ORTHOLOGY TO:F53B2.6
15.0595 -22.86 0.00218685 1300 4 1 3 [+] picture button
CBG05348 ENSCBRT00000002819 F30B5.7 [Source:RefSeq_peptide;Acc:NP_500517]F30B5.7 [Source:RefSeq_peptide;Acc:NP_500517] BY ORTHOLOGY TO:F30B5.7
15.6366 -20.8 0.00238748 1300 5 1 3 [+] picture button
CBG15733 ENSCBRT00000012024 cdh-1 encodes a cadherin that is similar, in the extracellular domain, to the Drosophila cadherin Dachsous (Ds). although the precise role of cdh-1 in C. elegans development and/or behavior is not yet known, loss of cdh-1 activity via RNAi using the hypersensitive rrf-3 strain can result in locomotion and growth defects, as well as larval lethality. [Source: WormBase]cdh-1 encodes a cadherin that is similar, in the extracellular domain, to the Drosophila cadherin Dachsous (Ds). although the precise role of cdh-1 in C. elegans development and/or behavior is not yet known, loss of cdh-1 activity via RNAi using the hypersensitive rrf-3 strain can result in locomotion and growth defects, as well as larval lethality. [Source: WormBase] BY ORTHOLOGY TO:R10F2.1
17.1901 -26.27 0.00246841 1300 4 1 4 [+] picture button
CBG10938 ENSCBRT00000001245 C16E9.1 [Source:RefSeq_peptide;Acc:NP_509176]C16E9.1 [Source:RefSeq_peptide;Acc:NP_509176] BY ORTHOLOGY TO:C16E9.1
15.4482 -20.3 0.00275834 1300 3 1 2 [+] picture button
CBG13892 ENSCBRT00000013658 K03H6.2 [Source:RefSeq_peptide;Acc:NP_500090]K03H6.2 [Source:RefSeq_peptide;Acc:NP_500090] BY ORTHOLOGY TO:K03H6.2
14.9869 -20.07 0.00318354 1300 5 2 4 [+] picture button
CBG11773 ENSCBRT00000004088 acr-5 encodes a predicted member of the alpha subunit family of nicotinic acetylcholine receptors that is expressed in the nervous system. [Source: WormBase]acr-5 encodes a predicted member of the alpha subunit family of nicotinic acetylcholine receptors that is expressed in the nervous system. [Source: WormBase] BY ORTHOLOGY TO:K03F8.2
15.5877 -28.42 0.00319054 1300 2 1 2 [+] picture button
CBG12847 ENSCBRT00000013762 C32E12.4 [Source:RefSeq_peptide;Acc:NP_491546]C32E12.4 [Source:RefSeq_peptide;Acc:NP_491546] BY ORTHOLOGY TO:C32E12.4
17.6818 -31.21 0.00333197 1300 5 1 5 [+] picture button
CBG07405 ENSCBRT00000011831 Y12A6A.2 [Source:RefSeq_peptide;Acc:NP_510281]Y12A6A.2 [Source:RefSeq_peptide;Acc:NP_510281] BY ORTHOLOGY TO:Y12A6A.2
15.7361 -24.89 0.00355388 1300 5 1 4 [+] picture button
CBG04646 ENSCBRT00000010534 F47B8.3 [Source:RefSeq_peptide;Acc:NP_506549]F47B8.3 [Source:RefSeq_peptide;Acc:NP_506549] BY ORTHOLOGY TO:F47B8.3
15.1862 -22.32 0.003681 1300 9 1 7 [+] picture button
CBG15974 ENSCBRT00000014234 F35B3.4 [Source:RefSeq_peptide;Acc:NP_510750]F35B3.4 [Source:RefSeq_peptide;Acc:NP_510750] BY ORTHOLOGY TO:F35B3.4
15.5517 -23.87 0.00384659 1300 4 1 4 [+] picture button
CBG17879 ENSCBRT00000000428 K10C9.4 [Source:RefSeq_peptide;Acc:NP_503368]K10C9.4 [Source:RefSeq_peptide;Acc:NP_503368] BY ORTHOLOGY TO:K10C9.4
15.4035 -22.67 0.00387676 1300 4 1 4 [+] picture button
ENSCBRT00000010634 H40L08.3 [Source:RefSeq_peptide;Acc:NP_510505]H40L08.3 [Source:RefSeq_peptide;Acc:NP_510505] BY ORTHOLOGY TO:H40L08.3
14.9611 -18.17 0.00414526 1300 6 2 4 [+] picture button
CBG10659 ENSCBRT00000008866 T14C1.1 encodes a homolog of the functionally active Fmrf Receptor (FR. CG2114) of D. melanogaster. it is thus possible that T14C1.1 is a receptor for one of the FMRF-like neurotransmitters in C. elegans (e.g., FLP-1 through FLP-12). [Source: WormBase]T14C1.1 encodes a homolog of the functionally active Fmrf Receptor (FR. CG2114) of D. melanogaster. it is thus possible that T14C1.1 is a receptor for one of the FMRF-like neurotransmitters in C. elegans (e.g., FLP-1 through FLP-12). [Source: WormBase] BY ORTHOLOGY TO:T14C1.1
17.4677 -28.89 0.00426736 1300 5 1 4 [+] picture button
CBG18547 ENSCBRT00000010680 Y95B8A.11 [Source:RefSeq_peptide;Acc:NP_490789]Y95B8A.11 [Source:RefSeq_peptide;Acc:NP_490789] BY ORTHOLOGY TO:Y95B8A.11
15.5581 -23.37 0.00438121 1300 5 1 6 [+] picture button
CBG05978 ENSCBRT00000009047 F13H10.6 [Source:RefSeq_peptide;Acc:NP_741485]F13H10.6 [Source:RefSeq_peptide;Acc:NP_741485] BY ORTHOLOGY TO:F13H10.6
15.0595 -22.18 0.00488217 1300 3 1 3 [+] picture button
CBG16701 ENSCBRT00000014650 F48E3.2 [Source:RefSeq_peptide;Acc:NP_509266]F48E3.2 [Source:RefSeq_peptide;Acc:NP_509266] BY ORTHOLOGY TO:F48E3.2
15.1603 -22.23 0.00594256 1300 2 2 2 [+] picture button
CBG12435 ENSCBRT00000013175 steroid receptor-interacting snf2 domain proteinsteroid receptor-interacting snf2 domain protein BY ORTHOLOGY TO:AAEL002647-RA
16.4615 -22.52 0.00668925 1300 2 1 3 [+] picture button
CBG06278 ENSCBRT00000010806 Serpentine Receptor, class X family member (srx-22) [Source:RefSeq_peptide;Acc:NP_503292]Serpentine Receptor, class X family member (srx-22) [Source:RefSeq_peptide;Acc:NP_503292] BY ORTHOLOGY TO:F31F4.3
14.8968 -23.32 0.00668925 1300 5 1 5 [+] picture button
CBG02703 ENSCBRT00000007472 FMRF-Like Peptide family member (flp-4) [Source:RefSeq_peptide;Acc:NP_496173]FMRF-Like Peptide family member (flp-4) [Source:RefSeq_peptide;Acc:NP_496173] BY ORTHOLOGY TO:C18D1.3
14.9035 -15.52 0.00673409 1300 7 1 5 [+] picture button
CBG01680 ENSCBRT00000005562 Y24D9A.1a [Source:RefSeq_peptide;Acc:NP_741374]Y24D9A.1a [Source:RefSeq_peptide;Acc:NP_741374] BY ORTHOLOGY TO:Y24D9A.1a
14.7847 -19.98 0.00770025 1300 1 1 1 [+] picture button
CBG02748 ENSCBRT00000007338 ZK930.2 [Source:RefSeq_peptide;Acc:NP_496539]ZK930.2 [Source:RefSeq_peptide;Acc:NP_496539] BY ORTHOLOGY TO:ZK930.2
15.0504 -25.52 0.00802025 1300 10 1 17 [+] picture button
CBG23384 ENSCBRT00000011503 phospholysine phosphohistidine inorganic pyrophosphate phosphatase [Source:RefSeq_peptide;Acc:NP_071409]phospholysine phosphohistidine inorganic pyrophosphate phosphatase [Source:RefSeq_peptide;Acc:NP_071409] BY ORTHOLOGY TO:ENSMMUT00000021333
14.779 -17.76 0.00825699 1300 3 2 2 [+] picture button
CBG21783 ENSCBRT00000004644 Intraflagellar transport 122 homolog (WD repeat protein 10). [Source:Uniprot/SWISSPROT;Acc:Q9HBG6]Intraflagellar transport 122 homolog (WD repeat protein 10). [Source:Uniprot/SWISSPROT;Acc:Q9HBG6] BY ORTHOLOGY TO:ENSMMUT00000017853
16.8689 -29.53 0.0085106 1300 1 1 1 [+] picture button
CBG14816 ENSCBRT00000006914 hypothetical protein LOC641571 [Source:RefSeq_peptide;Acc:NP_001032658]hypothetical protein LOC641571 [Source:RefSeq_peptide;Acc:NP_001032658] BY ORTHOLOGY TO:ENSDART00000075989
16.836 -27.53 0.00883908 1300 3 1 3 [+] picture button
CBG12469 ENSCBRT00000013195 COLlagen family member (col-118) [Source:RefSeq_peptide;Acc:NP_501532]COLlagen family member (col-118) [Source:RefSeq_peptide;Acc:NP_501532] BY ORTHOLOGY TO:T11B7.3
16.7287 -21.39 0.00999937 1300 7 1 11 [+] picture button
CBG07177 ENSCBRT00000012216 conserved hypothetical proteinconserved hypothetical protein BY ORTHOLOGY TO:AAEL001475-RA
16.6993 -25.67 0.0103429 1300 2 1 2 [+] picture button
CBG01246 ENSCBRT00000005028 Nuclear Hormone Receptor family member (nhr-190) [Source:RefSeq_peptide;Acc:NP_503276]Nuclear Hormone Receptor family member (nhr-190) [Source:RefSeq_peptide;Acc:NP_503276] BY ORTHOLOGY TO:F48G7.11
16.5886 -21.71 0.0117428 1300 3 1 5 [+] picture button
CBG13909 ENSCBRT00000013649 CG32344-PA [Source:RefSeq_peptide;Acc:NP_612028]CG32344-PA [Source:RefSeq_peptide;Acc:NP_612028] BY ORTHOLOGY TO:CG32344-RA
16.5633 -20.55 0.0120878 1300 8 1 6 [+] picture button
CBG09147 ENSCBRT00000008896 R13A5.11 [Source:RefSeq_peptide;Acc:NP_498666]R13A5.11 [Source:RefSeq_peptide;Acc:NP_498666] BY ORTHOLOGY TO:R13A5.11
16.5357 -27.63 0.012477 1300 1 1 1 [+] picture button
CBG13271 ENSCBRT00000001064 Y66D12A.17 encodes a paralog of GFI-3 that, like GFI-3, is distantly similar to the human anaphase promoting complex subunit APC5. [Source: WormBase]Y66D12A.17 encodes a paralog of GFI-3 that, like GFI-3, is distantly similar to the human anaphase promoting complex subunit APC5. [Source: WormBase] BY ORTHOLOGY TO:Y66D12A.17
16.4561 -26.27 0.0136681 1300 9 2 11 [+] picture button
CBG24189 ENSCBRT00000004380 rnp-5 encodes a putative member of the exon-exon junction complex, orthologous to human RNPS1 (OMIM:606447). RNP-5 is dispensable for embryonic viability. [Source: WormBase]rnp-5 encodes a putative member of the exon-exon junction complex, orthologous to human RNPS1 (OMIM:606447). RNP-5 is dispensable for embryonic viability. [Source: WormBase] BY ORTHOLOGY TO:K02F3.11
16.4275 -21.48 0.0141211 1300 3 1 3 [+] picture button
CBG16728 ENSCBRT00000012807 F08C6.5 [Source:RefSeq_peptide;Acc:NP_509280]F08C6.5 [Source:RefSeq_peptide;Acc:NP_509280] BY ORTHOLOGY TO:F08C6.5
16.4081 -27.89 0.0144394 1300 5 2 5 [+] picture button
CBG12702 ENSCBRT00000014341 T23B3.4 [Source:RefSeq_peptide;Acc:NP_491918]T23B3.4 [Source:RefSeq_peptide;Acc:NP_491918] BY ORTHOLOGY TO:T23B3.4
16.3886 -23.57 0.0147643 1300 6 2 8 [+] picture button
CBG04620 ENSCBRT00000010509 dhs-22 encodes a short-chain dehydrogenase predicted to be mitochondrial. [Source: WormBase]dhs-22 encodes a short-chain dehydrogenase predicted to be mitochondrial. [Source: WormBase] BY ORTHOLOGY TO:C15H11.4
16.3491 -24.57 0.0154458 1300 2 1 2 [+] picture button
CBG03159 ENSCBRT00000006913 T01B7.6 [Source:RefSeq_peptide;Acc:NP_495857]T01B7.6 [Source:RefSeq_peptide;Acc:NP_495857] BY ORTHOLOGY TO:T01B7.6
16.3292 -19.59 0.015801 1300 2 1 2 [+] picture button
CBG02229 ENSCBRT00000004962 UPF0392 protein F59C6.8. [Source:Uniprot/SWISSPROT;Acc:Q93834]UPF0392 protein F59C6.8. [Source:Uniprot/SWISSPROT;Acc:Q93834] BY ORTHOLOGY TO:F59C6.8
16.2758 -24.74 0.016794 1300 8 2 14 [+] picture button
CBG10884 ENSCBRT00000001286 Inward rectifier potassium channel irk-1. [Source:Uniprot/SWISSPROT;Acc:P52192]Inward rectifier potassium channel irk-1. [Source:Uniprot/SWISSPROT;Acc:P52192] BY ORTHOLOGY TO:R03E9.4
16.2469 -25.42 0.0173566 1300 2 1 2 [+] picture button
CBG19664 ENSCBRT00000000061 hydroxypyruvate isomerase homolog [Source:RefSeq_peptide;Acc:NP_112484]hydroxypyruvate isomerase homolog [Source:RefSeq_peptide;Acc:NP_112484] BY ORTHOLOGY TO:ENSORLT00000003951
16.2312 -19.59 0.0176686 1300 2 1 2 [+] picture button
CBG01639 ENSCBRT00000005524 frm-5 encodes a protein that contains a FERM (Band 4.1-ezrin-radixin-moesin) domain near the center of the molecule and two C-terminal PDZ domains. by homology, FRM-5 is predicted to function as a membrane-cytoskeleton linker protein that plays a role in cell adhesion, migration, or organization of cell surface structures. however, as loss of frm-5 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of FRM-5 in C. elegans development and/or behavior is not yet known. the FRM-5 FERM and PDZ domains are most similar to those found in cytoplasmic protein tyrosine phosphatases, even though FRM-5 does not appear to be a phosphatase. [Source: WormBase]frm-5 encodes a protein that contains a FERM (Band 4.1-ezrin-radixin-moesin) domain near the center of the molecule and two C-terminal PDZ domains. by homology, FRM-5 is predicted to function as a membrane-cytoskeleton linker protein that plays a role in cell adhesion, migration, or organization of cell surface structures. however, as loss of frm-5 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of FRM-5 in C. elegans development and/or behavior is not yet known. the FRM-5 FERM and PDZ domains are most similar to those found in cytoplasmic protein tyrosine phosphatases, even though FRM-5 does not appear to be a phosphatase. [Source: WormBase] BY ORTHOLOGY TO:Y38C1AB.8
16.2308 -27.24 0.0176772 1300 3 1 4 [+] picture button
CBG08471 ENSCBRT00000000251 C35E7.5a [Source:RefSeq_peptide;Acc:NP_492830]C35E7.5a [Source:RefSeq_peptide;Acc:NP_492830] BY ORTHOLOGY TO:C35E7.5a
16.2308 -25.38 0.0176772 1300 4 1 4 [+] picture button
CBG01082 ENSCBRT00000005240 tripartite motif protein trim9tripartite motif protein trim9 BY ORTHOLOGY TO:AAEL002642-RA
16.2182 -24.72 0.017934 1300 2 1 2 [+] picture button
CBG03703 ENSCBRT00000008590 C04F12.1 [Source:RefSeq_peptide;Acc:NP_492573]C04F12.1 [Source:RefSeq_peptide;Acc:NP_492573] BY ORTHOLOGY TO:C04F12.1
16.1747 -21.52 0.0188427 1300 4 1 7 [+] picture button
CBG15319 ENSCBRT00000009587 T27E9.9 [Source:RefSeq_peptide;Acc:NP_499789]T27E9.9 [Source:RefSeq_peptide;Acc:NP_499789] BY ORTHOLOGY TO:T27E9.9
16.1699 -22.65 0.0189463 1300 2 1 2 [+] picture button
CBG08798 ENSCBRT00000000553 ZC266.2 [Source:RefSeq_peptide;Acc:NP_504265]ZC266.2 [Source:RefSeq_peptide;Acc:NP_504265] BY ORTHOLOGY TO:ZC266.2
16.1671 -20.98 0.019008 1300 6 1 5 [+] picture button

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Download table: GFF TXT
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