spacer

Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cel-miR-260

128 hits found.


Page 1 of 3
1 2 3 next >>

Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
picture button picture button picture button picture button picture button picture button picture button picture button picture button picture button
CBG02706 ENSCBRT00000007469 T01H10.7 [Source:RefSeq_peptide;Acc:NP_510029]T01H10.7 [Source:RefSeq_peptide;Acc:NP_510029] BY ORTHOLOGY TO:T01H10.7
17.1489 -26.88 0.00113327 1300 2 1 2 [+] picture button
CBG06387 ENSCBRT00000010895 Nuclear hormone receptor family member nhr-130. [Source:Uniprot/SWISSPROT;Acc:O16963]Nuclear hormone receptor family member nhr-130. [Source:Uniprot/SWISSPROT;Acc:O16963] BY ORTHOLOGY TO:T01G6.8
15.7642 -11.02 0.00157928 1300 2 1 2 [+] picture button
CBG10120 ENSCBRT00000007415 Transthyretin-like protein C40H1.5 precursor. [Source:Uniprot/SWISSPROT;Acc:Q03575]Transthyretin-like protein C40H1.5 precursor. [Source:Uniprot/SWISSPROT;Acc:Q03575] BY ORTHOLOGY TO:C40H1.5
15.2576 -24.54 0.00241117 1300 3 1 2 [+] picture button
CBG20470 ENSCBRT00000003864 F22D6.10 [Source:RefSeq_peptide;Acc:NP_492013]F22D6.10 [Source:RefSeq_peptide;Acc:NP_492013] BY ORTHOLOGY TO:F22D6.10
16.6312 -25.42 0.0024757 1300 3 1 3 [+] picture button
CBG10899 ENSCBRT00000001272 Peroxisomal multifunctional enzyme type 2 (MFE-2) (D-bifunctional protein) (DBP) (17-beta-hydroxysteroid dehydrogenase 4) (17-beta-HSD 4) (D-3-hydroxyacyl-CoA dehydratase) (EC 4.2.1.107) (3-alpha,7- alpha,12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hy [Source:Uniprot/SWISSPROT;Acc:P51659]Peroxisomal multifunctional enzyme type 2 (MFE-2) (D-bifunctional protein) (DBP) (17-beta-hydroxysteroid dehydrogenase 4) (17-beta-HSD 4) (D-3-hydroxyacyl-CoA dehydratase) (EC 4.2.1.107) (3-alpha,7- alpha,12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hy [Source:Uniprot/SWISSPROT;Acc:P51659] BY ORTHOLOGY TO:ENSOANT00000032618
17.0134 -25.24 0.00254192 1300 4 1 3 [+] picture button
CBG12071 ENSCBRT00000011656 C09D1.2 [Source:RefSeq_peptide;Acc:NP_491291]C09D1.2 [Source:RefSeq_peptide;Acc:NP_491291] BY ORTHOLOGY TO:C09D1.2
15.5612 -19.81 0.00266983 1300 3 2 2 [+] picture button
CBG04460 ENSCBRT00000008952 Putative D-amino-acid oxidase F18E3.7 (EC 1.4.3.3) (DAMOX) (DAO) (DAAO). [Source:Uniprot/SWISSPROT;Acc:Q19564]Putative D-amino-acid oxidase F18E3.7 (EC 1.4.3.3) (DAMOX) (DAO) (DAAO). [Source:Uniprot/SWISSPROT;Acc:Q19564] BY ORTHOLOGY TO:F18E3.7a
15.4651 -11.28 0.00302362 1300 1 1 1 [+] picture button
CBG14065 ENSCBRT00000002539 hypothetical protein LOC678543 [Source:RefSeq_peptide;Acc:NP_001035392]hypothetical protein LOC678543 [Source:RefSeq_peptide;Acc:NP_001035392] BY ORTHOLOGY TO:ENSDART00000104315
16.3292 -15.29 0.00304222 1300 4 2 4 [+] picture button
CBG05550 ENSCBRT00000005366 F25C8.1 [Source:RefSeq_peptide;Acc:NP_508036]F25C8.1 [Source:RefSeq_peptide;Acc:NP_508036] BY ORTHOLOGY TO:F25C8.1
15.4439 -16.86 0.00348104 1300 3 2 3 [+] picture button
CBG03101 ENSCBRT00000006973 ZK673.9 [Source:RefSeq_peptide;Acc:NP_496252]ZK673.9 [Source:RefSeq_peptide;Acc:NP_496252] BY ORTHOLOGY TO:ZK673.9
16.2308 -20.2 0.00349992 1300 6 1 6 [+] picture button
CBG18064 ENSCBRT00000003162 C28A5.6 [Source:RefSeq_peptide;Acc:NP_497900]C28A5.6 [Source:RefSeq_peptide;Acc:NP_497900] BY ORTHOLOGY TO:C28A5.6
17.608 -27.09 0.00349992 1300 3 1 3 [+] picture button
CBG17610 ENSCBRT00000002151 SKN-1 Dependent Zygotic transcript family member (sdz-13) [Source:RefSeq_peptide;Acc:NP_502018]SKN-1 Dependent Zygotic transcript family member (sdz-13) [Source:RefSeq_peptide;Acc:NP_502018] BY ORTHOLOGY TO:F13E9.6
15.4495 -13.82 0.0037919 1300 5 1 5 [+] picture button
CBG02892 ENSCBRT00000006163 W02B12.1 [Source:RefSeq_peptide;Acc:NP_496440]W02B12.1 [Source:RefSeq_peptide;Acc:NP_496440] BY ORTHOLOGY TO:W02B12.1
15.356 -13.99 0.00403019 1300 3 1 4 [+] picture button
CBG24788 ENSCBRT00000014387 rol-3 was identified in screens for recessive mutations that affect body morphology. strong loss-of-function mutations in rol-3 result in early-to-mid larval lethality, while weaker mutations result in animals that are left-handed rollers at the adult stage only. lethal rol-3 mutations are suppressed by mutations in srl-1 and srl-2. [Source: WormBase]rol-3 was identified in screens for recessive mutations that affect body morphology. strong loss-of-function mutations in rol-3 result in early-to-mid larval lethality, while weaker mutations result in animals that are left-handed rollers at the adult stage only. lethal rol-3 mutations are suppressed by mutations in srl-1 and srl-2. [Source: WormBase] BY ORTHOLOGY TO:C16D9.2c
15.3152 -17.26 0.00416738 1300 3 2 3 [+] picture button
CBG14399 ENSCBRT00000002792 COLlagen family member (col-165) [Source:RefSeq_peptide;Acc:NP_508747]COLlagen family member (col-165) [Source:RefSeq_peptide;Acc:NP_508747] BY ORTHOLOGY TO:F14H12.1
15.2953 -16.37 0.00434754 1300 3 2 3 [+] picture button
CBG08630 ENSCBRT00000002966 Serpentine Receptor, class SX family member (srsx-5) [Source:RefSeq_peptide;Acc:NP_505038]Serpentine Receptor, class SX family member (srsx-5) [Source:RefSeq_peptide;Acc:NP_505038] BY ORTHOLOGY TO:Y97E10B.2
16.0438 -14.53 0.00452138 1300 6 2 6 [+] picture button
CBG18618 ENSCBRT00000011205 Seven TM Receptor family member (str-217) [Source:RefSeq_peptide;Acc:NP_507300]Seven TM Receptor family member (str-217) [Source:RefSeq_peptide;Acc:NP_507300] BY ORTHOLOGY TO:Y102A5C.28
15.8456 -17.65 0.0045859 1300 5 1 4 [+] picture button
CBG11881 ENSCBRT00000009324 C26C6.7 [Source:RefSeq_peptide;Acc:NP_492107]C26C6.7 [Source:RefSeq_peptide;Acc:NP_492107] BY ORTHOLOGY TO:C26C6.7
15.2684 -12.4 0.00460366 1300 5 1 10 [+] picture button
CBG15647 ENSCBRT00000011896 Y48G9A.3 [Source:RefSeq_peptide;Acc:NP_497506]Y48G9A.3 [Source:RefSeq_peptide;Acc:NP_497506] BY ORTHOLOGY TO:Y48G9A.3
16.2308 -24.83 0.00460817 1300 3 1 2 [+] picture button
CBG08101 ENSCBRT00000003630 F56F10.2 [Source:RefSeq_peptide;Acc:NP_508167]F56F10.2 [Source:RefSeq_peptide;Acc:NP_508167] BY ORTHOLOGY TO:F56F10.2
17.608 -25.24 0.00503446 1300 2 1 2 [+] picture button
CBG01823 ENSCBRT00000002891 alkB, alkylation repair homolog 6 isoform 2 [Source:RefSeq_peptide;Acc:NP_116267]alkB, alkylation repair homolog 6 isoform 2 [Source:RefSeq_peptide;Acc:NP_116267] BY ORTHOLOGY TO:ENSXETT00000006206
15.3272 -20.87 0.00522646 1300 2 2 2 [+] picture button
CBG00250 ENSCBRT00000000232 C13E3.1 [Source:RefSeq_peptide;Acc:NP_741867]C13E3.1 [Source:RefSeq_peptide;Acc:NP_741867] BY ORTHOLOGY TO:C13E3.1
15.1672 -13.28 0.00570053 1300 1 1 2 [+] picture button
CBG11530 ENSCBRT00000013803 F53F4.4 [Source:RefSeq_peptide;Acc:NP_506368]F53F4.4 [Source:RefSeq_peptide;Acc:NP_506368] BY ORTHOLOGY TO:F53F4.4
15.4439 -21.62 0.00580562 1300 2 1 2 [+] picture button
CBG08555 ENSCBRT00000002856 K10C8.2 encodes a homolog of the functionally active Fmrf Receptor (FR. CG2114) of D. melanogaster. it is thus possible that K10C8.2 is a receptor for one of the FMRF-like neurotransmitters in C. elegans (e.g., FLP-1 through FLP-12). [Source: WormBase]K10C8.2 encodes a homolog of the functionally active Fmrf Receptor (FR. CG2114) of D. melanogaster. it is thus possible that K10C8.2 is a receptor for one of the FMRF-like neurotransmitters in C. elegans (e.g., FLP-1 through FLP-12). [Source: WormBase] BY ORTHOLOGY TO:K10C8.2
15.1603 -18.62 0.00604199 1300 3 1 3 [+] picture button
CBG18499 ENSCBRT00000000952 SaPosin-like Protein family member (spp-8) [Source:RefSeq_peptide;Acc:NP_501447]SaPosin-like Protein family member (spp-8) [Source:RefSeq_peptide;Acc:NP_501447] BY ORTHOLOGY TO:C28C12.5
15.0183 -16.83 0.00778085 1300 5 1 2 [+] picture button
CBG15778 ENSCBRT00000012154 B0218.7 [Source:RefSeq_peptide;Acc:NP_501370]B0218.7 [Source:RefSeq_peptide;Acc:NP_501370] BY ORTHOLOGY TO:B0218.7
17.1813 -24.11 0.00816251 1300 6 1 7 [+] picture button
CBG18028 ENSCBRT00000003068 F10F2.3 [Source:RefSeq_peptide;Acc:NP_497941]F10F2.3 [Source:RefSeq_peptide;Acc:NP_497941] BY ORTHOLOGY TO:F10F2.3
15.1015 -14.09 0.0086273 1300 1 1 1 [+] picture button
CBG04078 ENSCBRT00000009859 C34B7.4 [Source:RefSeq_peptide;Acc:NP_492265]C34B7.4 [Source:RefSeq_peptide;Acc:NP_492265] BY ORTHOLOGY TO:C34B7.4
14.9622 -10.11 0.00873556 1300 4 1 3 [+] picture button
CBG08141 ENSCBRT00000003737 Uncharacterized protein F13C5.5 precursor. [Source:Uniprot/SWISSPROT;Acc:O76565]Uncharacterized protein F13C5.5 precursor. [Source:Uniprot/SWISSPROT;Acc:O76565] BY ORTHOLOGY TO:F13C5.5
14.952 -15.24 0.00892139 1300 2 1 2 [+] picture button
CBG00577 ENSCBRT00000003111 R04A9.2 [Source:RefSeq_peptide;Acc:NP_508092]R04A9.2 [Source:RefSeq_peptide;Acc:NP_508092] BY ORTHOLOGY TO:R04A9.2
14.9482 -19.3 0.00899084 1300 1 1 1 [+] picture button
CBG18640 ENSCBRT00000011229 Seven TM Receptor family member (str-103) [Source:RefSeq_peptide;Acc:NP_507058]Seven TM Receptor family member (str-103) [Source:RefSeq_peptide;Acc:NP_507058] BY ORTHOLOGY TO:F44G3.1
17.0926 -15.43 0.0090233 1300 6 1 6 [+] picture button
CBG14194 ENSCBRT00000002610 dhs-26 encodes a short-chain dehydrogenase predicted to be mitochondrial. [Source: WormBase]dhs-26 encodes a short-chain dehydrogenase predicted to be mitochondrial. [Source: WormBase] BY ORTHOLOGY TO:ZK816.5
15.0669 -19.74 0.00914966 1300 2 1 2 [+] picture button
CBG08133 ENSCBRT00000003718 conserved hypothetical proteinconserved hypothetical protein BY ORTHOLOGY TO:AAEL000134-RA
17.0556 -18.86 0.00940811 1300 2 1 2 [+] picture button
CBG00693 ENSCBRT00000003154 similar to CG10721-PA (LOC642732), mRNA [Source:RefSeq_dna;Acc:XR_016381]similar to CG10721-PA (LOC642732), mRNA [Source:RefSeq_dna;Acc:XR_016381] BY ORTHOLOGY TO:SINFRUT00000160318
17.0178 -23.31 0.00981886 1300 7 2 7 [+] picture button
CBG21964 ENSCBRT00000008260 F31D5.2 [Source:RefSeq_peptide;Acc:NP_494741]F31D5.2 [Source:RefSeq_peptide;Acc:NP_494741] BY ORTHOLOGY TO:F31D5.2
15.0046 -14.98 0.010356 1300 7 1 10 [+] picture button
CBG10358 ENSCBRT00000007834 F55G11.1 [Source:RefSeq_peptide;Acc:NP_502476]F55G11.1 [Source:RefSeq_peptide;Acc:NP_502476] BY ORTHOLOGY TO:F55G11.1
16.9531 -21.93 0.0105622 1300 3 1 3 [+] picture button
CBG11868 ENSCBRT00000009317 T28F4.6 [Source:RefSeq_peptide;Acc:NP_492103]T28F4.6 [Source:RefSeq_peptide;Acc:NP_492103] BY ORTHOLOGY TO:T28F4.6
16.9104 -20.81 0.0110831 1300 3 1 3 [+] picture button
CBG06985 ENSCBRT00000012347 C50D2.3 [Source:RefSeq_peptide;Acc:NP_493661]C50D2.3 [Source:RefSeq_peptide;Acc:NP_493661] BY ORTHOLOGY TO:C50D2.3
16.9023 -23.87 0.011185 1300 3 1 3 [+] picture button
CBG01437 ENSCBRT00000002517 Dolichyl-phosphate beta-glucosyltransferase (EC 2.4.1.117) (DolP- glucosyltransferase). [Source:Uniprot/SWISSPROT;Acc:Q9Y673]Dolichyl-phosphate beta-glucosyltransferase (EC 2.4.1.117) (DolP- glucosyltransferase). [Source:Uniprot/SWISSPROT;Acc:Q9Y673] BY ORTHOLOGY TO:SINFRUT00000138920
16.8341 -19.75 0.012078 1300 5 1 5 [+] picture button
CBG05450 ENSCBRT00000004753 Y73B6BL.22 [Source:RefSeq_peptide;Acc:NP_500979]Y73B6BL.22 [Source:RefSeq_peptide;Acc:NP_500979] BY ORTHOLOGY TO:Y73B6BL.22
16.7834 -20.12 0.0127866 1300 3 1 2 [+] picture button
CBG23373 ENSCBRT00000011485 R07B7.11 is orthologous to the human gene ALPHA-GALACTOSIDASE B (GALB. OMIM:104170), which when mutated leads to Schindler disease, Kanzaki disease, or NAGA deficiency. [Source: WormBase]R07B7.11 is orthologous to the human gene ALPHA-GALACTOSIDASE B (GALB. OMIM:104170), which when mutated leads to Schindler disease, Kanzaki disease, or NAGA deficiency. [Source: WormBase] BY ORTHOLOGY TO:R07B7.11
16.7782 -16.99 0.0128629 1300 4 1 5 [+] picture button
CBG01026 ENSCBRT00000002118 Y53C12C.1 encodes a divergent paired-like homeodomain protein that does not belong to the Q50, K50, or S50 classes. it has no obvious function in mass RNAi assays. [Source: WormBase]Y53C12C.1 encodes a divergent paired-like homeodomain protein that does not belong to the Q50, K50, or S50 classes. it has no obvious function in mass RNAi assays. [Source: WormBase] BY ORTHOLOGY TO:Y53C12C.1
16.7227 -19.54 0.0136916 1300 2 1 2 [+] picture button
CBG07426 ENSCBRT00000011086 cah-4 encodes a carbonic anhydrase homolog, which is rather divergent from other such homologs in C. elegans (with at most 38% identity to any other carbonic anhydrase, in or out of C. elegans). it is individually dispensable for viability and for grossly normal postembryonic morphology, and thus may have a more subtle biological function than the basic cytoprotective functions expected for carbonic anhydrases. [Source: WormBase]cah-4 encodes a carbonic anhydrase homolog, which is rather divergent from other such homologs in C. elegans (with at most 38% identity to any other carbonic anhydrase, in or out of C. elegans). it is individually dispensable for viability and for grossly normal postembryonic morphology, and thus may have a more subtle biological function than the basic cytoprotective functions expected for carbonic anhydrases. [Source: WormBase] BY ORTHOLOGY TO:R01E6.3b
16.7227 -18.55 0.0136916 1300 5 2 5 [+] picture button
CBG17584 ENSCBRT00000002126 F31B12.2 [Source:RefSeq_peptide;Acc:NP_509807]F31B12.2 [Source:RefSeq_peptide;Acc:NP_509807] BY ORTHOLOGY TO:F31B12.2
16.6913 -22.98 0.0141826 1300 3 1 4 [+] picture button
CBG21464 ENSCBRT00000002720 CG9960-PA, isoform A [Source:RefSeq_peptide;Acc:NP_001027221]CG9960-PA, isoform A [Source:RefSeq_peptide;Acc:NP_001027221] BY ORTHOLOGY TO:CG9960-RA
16.6584 -17.93 0.014716 1300 4 1 4 [+] picture button
CBG03222 ENSCBRT00000006837 Translocation protein SEC62 (Translocation protein 1) (TP-1) (hTP-1). [Source:Uniprot/SWISSPROT;Acc:Q99442]Translocation protein SEC62 (Translocation protein 1) (TP-1) (hTP-1). [Source:Uniprot/SWISSPROT;Acc:Q99442] BY ORTHOLOGY TO:ENSORLT00000022471
16.6446 -19.72 0.0149473 1300 4 1 4 [+] picture button
CBG14759 ENSCBRT00000006769 F13D11.1 [Source:RefSeq_peptide;Acc:NP_508977]F13D11.1 [Source:RefSeq_peptide;Acc:NP_508977] BY ORTHOLOGY TO:F13D11.1
15.092 -14.18 0.0149913 1300 4 1 4 [+] picture button
CBG08415 ENSCBRT00000012899 Y55F3AM.13 [Source:RefSeq_peptide;Acc:NP_500031]Y55F3AM.13 [Source:RefSeq_peptide;Acc:NP_500031] BY ORTHOLOGY TO:Y55F3AM.13
16.6357 -21.43 0.0150975 1300 5 1 5 [+] picture button
CBG03850 ENSCBRT00000008691 oct-1 encodes a organic cation transporter predicted to contain twelve transmembrane domains. OCT-1 induces the transport of the prototypical organic cation tetraethylammonium when expressed in mammalian cells, and has broad substrate specificity. OCT-1 is orthologous to human OCTN2 (OMIM:603377, mutated in primary carnitine deficiency). [Source: WormBase]oct-1 encodes a organic cation transporter predicted to contain twelve transmembrane domains. OCT-1 induces the transport of the prototypical organic cation tetraethylammonium when expressed in mammalian cells, and has broad substrate specificity. OCT-1 is orthologous to human OCTN2 (OMIM:603377, mutated in primary carnitine deficiency). [Source: WormBase] BY ORTHOLOGY TO:F52F12.1a
16.5717 -19.05 0.0162213 1300 3 1 3 [+] picture button
CBG12022 ENSCBRT00000011698 DNA mismatch repair protein Msh2 (MutS protein homolog 2). [Source:Uniprot/SWISSPROT;Acc:P43246]DNA mismatch repair protein Msh2 (MutS protein homolog 2). [Source:Uniprot/SWISSPROT;Acc:P43246] BY ORTHOLOGY TO:ENSMMUT00000001393
16.44 -17.57 0.0187979 1300 3 1 3 [+] picture button

Page 1 of 3
1 2 3 next >>

Download table: GFF TXT
spacer
spacer