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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cel-miR-258

121 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG24641 ENSCBRT00000007716 ZK524.4 [Source:RefSeq_peptide;Acc:NP_492097]ZK524.4 [Source:RefSeq_peptide;Acc:NP_492097] BY ORTHOLOGY TO:ZK524.4
17.9463 -10.34 1e-06 1300 8 1 7 [+] picture button
CBG05837 ENSCBRT00000009059 Osm-9 and Capsaicin receptor-Related family member (ocr-4) [Source:RefSeq_peptide;Acc:NP_501172]Osm-9 and Capsaicin receptor-Related family member (ocr-4) [Source:RefSeq_peptide;Acc:NP_501172] BY ORTHOLOGY TO:Y40C5A.2
16.7986 -20.98 0.00161328 1300 4 1 3 [+] picture button
CBG11575 ENSCBRT00000011385 This gene encodes a protein containing a DnaJ ('J') domain. [Source: WormBase]This gene encodes a protein containing a DnaJ ('J') domain. [Source: WormBase] BY ORTHOLOGY TO:C01G10.12
16.7881 -21.97 0.00165464 1300 3 1 2 [+] picture button
CBG16168 ENSCBRT00000012589 GLYcosylation related family member (gly-14) [Source:RefSeq_peptide;Acc:NP_497719]GLYcosylation related family member (gly-14) [Source:RefSeq_peptide;Acc:NP_497719] BY ORTHOLOGY TO:M01F1.1
16.485 -17.36 0.00215206 1300 8 1 7 [+] picture button
CBG16163 ENSCBRT00000012588 B0416.1 [Source:RefSeq_peptide;Acc:NP_509569]B0416.1 [Source:RefSeq_peptide;Acc:NP_509569] BY ORTHOLOGY TO:B0416.1
18.8608 -12.12 0.00283055 1300 2 1 2 [+] picture button
CBG08987 ENSCBRT00000008486 Partitioning-defective 3 protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q4QZ15]Partitioning-defective 3 protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q4QZ15] BY ORTHOLOGY TO:ENSBTAT00000019972
16.8616 -16.05 0.0028311 1300 2 1 1 [+] picture button
CBG17893 ENSCBRT00000000440 HpaII tiny fragments locus 9c [Source:RefSeq_peptide;Acc:NP_001011895]HpaII tiny fragments locus 9c [Source:RefSeq_peptide;Acc:NP_001011895] BY ORTHOLOGY TO:ENSRNOT00000002580
16.8778 -18.91 0.00284465 1300 7 1 5 [+] picture button
CBG17409 ENSCBRT00000001185 C05C9.1 [Source:RefSeq_peptide;Acc:NP_509863]C05C9.1 [Source:RefSeq_peptide;Acc:NP_509863] BY ORTHOLOGY TO:C05C9.1
16.5931 -16.82 0.003618 1300 2 1 2 [+] picture button
CBG02581 ENSCBRT00000007555 The F57F10.1 gene encodes two proteins, F57F10.1A and F57F10.1B that are homologous to the Arabidopsis and Saccharomyces boron exporters, BOR1 and YNL275w, and closely similar to the to the human BOR1/YNL275w ortholog, BTS1. like BOR1 and YNL275w, F57F10.1A/B proteins might act to export borate ions. [Source: WormBase]The F57F10.1 gene encodes two proteins, F57F10.1A and F57F10.1B that are homologous to the Arabidopsis and Saccharomyces boron exporters, BOR1 and YNL275w, and closely similar to the to the human BOR1/YNL275w ortholog, BTS1. like BOR1 and YNL275w, F57F10.1A/B proteins might act to export borate ions. [Source: WormBase] BY ORTHOLOGY TO:F57F10.1b
18.6491 -24.1 0.00371751 1300 3 2 5 [+] picture button
CBG22102 ENSCBRT00000004315 Temporarily Assigned Gene name family member (tag-146) [Source:RefSeq_peptide;Acc:NP_491744]Temporarily Assigned Gene name family member (tag-146) [Source:RefSeq_peptide;Acc:NP_491744] BY ORTHOLOGY TO:C27A12.3
17.2605 -11.62 0.00411738 1300 6 1 14 [+] picture button
CBG12386 ENSCBRT00000013132 F55H12.3 [Source:RefSeq_peptide;Acc:NP_492397]F55H12.3 [Source:RefSeq_peptide;Acc:NP_492397] BY ORTHOLOGY TO:F55H12.3
17.5438 -20.45 0.00413723 1300 3 1 3 [+] picture button
CBG22705 ENSCBRT00000004268 C17H11.1 [Source:RefSeq_peptide;Acc:NP_509379]C17H11.1 [Source:RefSeq_peptide;Acc:NP_509379] BY ORTHOLOGY TO:C17H11.1
16.0959 -13.95 0.00433366 1300 4 1 3 [+] picture button
CBG07648 ENSCBRT00000010630 F20D1.8 [Source:RefSeq_peptide;Acc:NP_510492]F20D1.8 [Source:RefSeq_peptide;Acc:NP_510492] BY ORTHOLOGY TO:F20D1.8
16.163 -14.88 0.00466246 1300 3 1 8 [+] picture button
CBG14987 ENSCBRT00000004453 ctn-1 encodes a protein that belongs to the alpha-catulin family of catenin-like proteins. the precise function of ctn-1 is not yet known. the CTN-1 promoter-GFP fusion protein is expressed in body wall, vulval and anal muscle tissues. [Source: WormBase]ctn-1 encodes a protein that belongs to the alpha-catulin family of catenin-like proteins. the precise function of ctn-1 is not yet known. the CTN-1 promoter-GFP fusion protein is expressed in body wall, vulval and anal muscle tissues. [Source: WormBase] BY ORTHOLOGY TO:Y23H5A.5a
18.4245 -26.53 0.00496287 1300 3 1 3 [+] picture button
CBG08048 ENSCBRT00000003776 phosphatidylinositol synthasephosphatidylinositol synthase BY ORTHOLOGY TO:AAEL014142-RA
18.4036 -16.41 0.00509853 1300 10 1 14 [+] picture button
CBG04241 ENSCBRT00000007651 ZK484.7 [Source:RefSeq_peptide;Acc:NP_491758]ZK484.7 [Source:RefSeq_peptide;Acc:NP_491758] BY ORTHOLOGY TO:ZK484.7
16.5751 -11.35 0.00523788 1300 2 1 4 [+] picture button
CBG02372 ENSCBRT00000006653 Tyrosine-protein phosphatase vhp-1 (EC 3.1.3.48) (Vh1 dual specificity phosphatase family protein 1). [Source:Uniprot/SWISSPROT;Acc:Q10038]Tyrosine-protein phosphatase vhp-1 (EC 3.1.3.48) (Vh1 dual specificity phosphatase family protein 1). [Source:Uniprot/SWISSPROT;Acc:Q10038] BY ORTHOLOGY TO:F08B1.1b
18.3469 -23.1 0.00548336 1300 3 1 3 [+] picture button
CBG10832 ENSCBRT00000012507 myotubularin-related protein 2myotubularin-related protein 2 BY ORTHOLOGY TO:AAEL005367-RA
18.3068 -22.61 0.00577373 1300 4 1 5 [+] picture button
CBG17590 ENSCBRT00000002138 T05A10.6 [Source:RefSeq_peptide;Acc:NP_509804]T05A10.6 [Source:RefSeq_peptide;Acc:NP_509804] BY ORTHOLOGY TO:T05A10.6
16.6926 -15.43 0.00602912 1300 5 1 5 [+] picture button
CBG04012 ENSCBRT00000009936 B0207.1 [Source:RefSeq_peptide;Acc:NP_491722]B0207.1 [Source:RefSeq_peptide;Acc:NP_491722] BY ORTHOLOGY TO:B0207.1
16.5957 -15 0.00602912 1300 7 1 6 [+] picture button
CBG05932 ENSCBRT00000009012 F45E4.11 [Source:RefSeq_peptide;Acc:NP_501248]F45E4.11 [Source:RefSeq_peptide;Acc:NP_501248] BY ORTHOLOGY TO:F45E4.11
18.2215 -26.36 0.00644157 1300 1 1 1 [+] picture button
CBG07774 ENSCBRT00000010740 F46G10.2 [Source:RefSeq_peptide;Acc:NP_510218]F46G10.2 [Source:RefSeq_peptide;Acc:NP_510218] BY ORTHOLOGY TO:F46G10.2
16.1978 -17.37 0.00660692 1300 3 2 3 [+] picture button
CBG15256 ENSCBRT00000010434 C09F5.1 [Source:RefSeq_peptide;Acc:NP_497232]C09F5.1 [Source:RefSeq_peptide;Acc:NP_497232] BY ORTHOLOGY TO:C09F5.1
16.1416 -18.75 0.00805763 1300 2 1 2 [+] picture button
CBG05078 ENSCBRT00000010271 gar-1 encodes a G-protein-linked acetylcholine receptor. though gar-1 is most closely related to muscarinic acetylcholine receptors (mAChR), it is pharmacologically distinct from them in its response to certain ligands. gar-1 gene transcripts are expressed at all developmental stages. the GAR-1-GFP fusion protein is expressed in some head neurons and in the PVM neuron. electrophysiological studies indicate that gar-1 couples to the inhibitory subunit of G proteins and not to Gs or to Go/Gq. [Source: WormBase]gar-1 encodes a G-protein-linked acetylcholine receptor. though gar-1 is most closely related to muscarinic acetylcholine receptors (mAChR), it is pharmacologically distinct from them in its response to certain ligands. gar-1 gene transcripts are expressed at all developmental stages. the GAR-1-GFP fusion protein is expressed in some head neurons and in the PVM neuron. electrophysiological studies indicate that gar-1 couples to the inhibitory subunit of G proteins and not to Gs or to Go/Gq. [Source: WormBase] BY ORTHOLOGY TO:C15B12.5c
16.1326 -17.13 0.00806126 1300 4 2 6 [+] picture button
CBG16021 ENSCBRT00000014281 Y39F10A.1 [Source:RefSeq_peptide;Acc:NP_493805]Y39F10A.1 [Source:RefSeq_peptide;Acc:NP_493805] BY ORTHOLOGY TO:Y39F10A.1
16.2009 -13.77 0.00807489 1300 4 1 3 [+] picture button
CBG04434 ENSCBRT00000008923 ptr-14 encodes a nematode-specific member of the sterol sensing domain (SSD) proteins, distantly paralogous to Drosophila PATCHED (PTC) and human PTCH (OMIM:601309, mutated in basal cell nevus syndrome). PTR-14 is weakly required for normal molting from L4 to adult stages. PTR-14 is also required for normal growth to full size and locomotion. [Source: WormBase]ptr-14 encodes a nematode-specific member of the sterol sensing domain (SSD) proteins, distantly paralogous to Drosophila PATCHED (PTC) and human PTCH (OMIM:601309, mutated in basal cell nevus syndrome). PTR-14 is weakly required for normal molting from L4 to adult stages. PTR-14 is also required for normal growth to full size and locomotion. [Source: WormBase] BY ORTHOLOGY TO:R09H10.4
18.0422 -19.53 0.00810791 1300 2 1 2 [+] picture button
CBG02384 ENSCBRT00000006629 ADP-ribose pyrophosphatase, mitochondrial precursor (EC 3.6.1.13) (ADP-ribose diphosphatase) (Adenosine diphosphoribose pyrophosphatase) (ADPR-PPase) (ADP-ribose phosphohydrolase) (Nucleoside diphosphate- linked moiety X motif 9) (Nudix motif 9). [Source:Uniprot/SWISSPROT;Acc:Q9BW91]ADP-ribose pyrophosphatase, mitochondrial precursor (EC 3.6.1.13) (ADP-ribose diphosphatase) (Adenosine diphosphoribose pyrophosphatase) (ADPR-PPase) (ADP-ribose phosphohydrolase) (Nucleoside diphosphate- linked moiety X motif 9) (Nudix motif 9). [Source:Uniprot/SWISSPROT;Acc:Q9BW91] BY ORTHOLOGY TO:ENSGALT00000017784
18.0325 -24.93 0.00820941 1300 3 1 5 [+] picture button
CBG12987 ENSCBRT00000012933 wrt-10 encodes a hedgehog-like protein, with an N-terminal signal sequence, a Wart domain, and a C-terminal region of low-complexity sequence. WRT-10 is expressed in both male and hermaphrodite intestine. the Wart domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins. WRT-10 is required for normal growth to full size and locomotion. both of these requirements may reflect common defects in cholesterol-dependent hedgehog-like signalling or in vesicle trafficking. [Source: WormBase]wrt-10 encodes a hedgehog-like protein, with an N-terminal signal sequence, a Wart domain, and a C-terminal region of low-complexity sequence. WRT-10 is expressed in both male and hermaphrodite intestine. the Wart domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins. WRT-10 is required for normal growth to full size and locomotion. both of these requirements may reflect common defects in cholesterol-dependent hedgehog-like signalling or in vesicle trafficking. [Source: WormBase] BY ORTHOLOGY TO:ZK1290.8
16.163 -11.4 0.00847749 1300 2 2 3 [+] picture button
ENSCBRT00000007045 K09E10.2 [Source:RefSeq_peptide;Acc:NP_502345]K09E10.2 [Source:RefSeq_peptide;Acc:NP_502345] BY ORTHOLOGY TO:K09E10.2
16.2846 -17.6 0.00873153 1300 1 1 1 [+] picture button
CBG01702 ENSCBRT00000005579 ZK180.5b [Source:RefSeq_peptide;Acc:NP_741378]ZK180.5b [Source:RefSeq_peptide;Acc:NP_741378] BY ORTHOLOGY TO:ZK180.5c
16.1403 -15.31 0.00944658 1300 5 2 6 [+] picture button
CBG13780 ENSCBRT00000012745 Y41E3.3 [Source:RefSeq_peptide;Acc:NP_502809]Y41E3.3 [Source:RefSeq_peptide;Acc:NP_502809] BY ORTHOLOGY TO:Y41E3.3
17.7212 -14.43 0.0122238 1300 1 1 1 [+] picture button
CBG19038 ENSCBRT00000014063 Spectrin beta chain. [Source:Uniprot/SWISSPROT;Acc:Q00963]Spectrin beta chain. [Source:Uniprot/SWISSPROT;Acc:Q00963] BY ORTHOLOGY TO:CG5870-RA
17.6841 -19.39 0.0128158 1300 4 2 4 [+] picture button
CBG18913 ENSCBRT00000014167 T28C12.1 [Source:RefSeq_peptide;Acc:NP_504617]T28C12.1 [Source:RefSeq_peptide;Acc:NP_504617] BY ORTHOLOGY TO:T28C12.1
17.6545 -25.91 0.0133097 1300 3 2 2 [+] picture button
CBG15778 ENSCBRT00000012154 B0218.7 [Source:RefSeq_peptide;Acc:NP_501370]B0218.7 [Source:RefSeq_peptide;Acc:NP_501370] BY ORTHOLOGY TO:B0218.7
17.6023 -12.33 0.0142246 1300 6 1 7 [+] picture button
CBG18939 ENSCBRT00000014151 T05H4.3 [Source:RefSeq_peptide;Acc:NP_504641]T05H4.3 [Source:RefSeq_peptide;Acc:NP_504641] BY ORTHOLOGY TO:T05H4.3
17.5478 -23.89 0.0152466 1300 2 1 3 [+] picture button
CBG08352 ENSCBRT00000013005 C43E11.5 [Source:RefSeq_peptide;Acc:NP_491335]C43E11.5 [Source:RefSeq_peptide;Acc:NP_491335] BY ORTHOLOGY TO:C43E11.5
17.5345 -23.71 0.0155074 1300 2 1 2 [+] picture button
CBG09215 ENSCBRT00000001818 F34D10.3 [Source:RefSeq_peptide;Acc:NP_497757]F34D10.3 [Source:RefSeq_peptide;Acc:NP_497757] BY ORTHOLOGY TO:F34D10.3
17.5239 -26.7 0.0157178 1300 3 1 4 [+] picture button
CBG11754 ENSCBRT00000004099 Probable phospholipid-transporting ATPase IB (EC 3.6.3.1) (ATPase class I type 8A member 2) (ML-1). [Source:Uniprot/SWISSPROT;Acc:Q9NTI2]Probable phospholipid-transporting ATPase IB (EC 3.6.3.1) (ATPase class I type 8A member 2) (ML-1). [Source:Uniprot/SWISSPROT;Acc:Q9NTI2] BY ORTHOLOGY TO:SINFRUT00000183047
17.4799 -23.39 0.0166208 1300 4 1 3 [+] picture button
CBG03593 ENSCBRT00000006584 TIMeless (Drosophila/mammal) related family member (tim-1) [Source:RefSeq_peptide;Acc:NP_499594]TIMeless (Drosophila/mammal) related family member (tim-1) [Source:RefSeq_peptide;Acc:NP_499594] BY ORTHOLOGY TO:Y75B8A.22
17.4405 -23.01 0.0174745 1300 2 1 2 [+] picture button
CBG22411 ENSCBRT00000004930 Glutathione S-Transferase family member (gst-33) [Source:RefSeq_peptide;Acc:NP_503968]Glutathione S-Transferase family member (gst-33) [Source:RefSeq_peptide;Acc:NP_503968] BY ORTHOLOGY TO:C02A12.1
17.426 -24.48 0.0177992 1300 3 1 3 [+] picture button
CBG13635 ENSCBRT00000002325 longevity assurance homolog 1 (S. cerevisiae) [Source:MarkerSymbol;Acc:MGI:2136690]longevity assurance homolog 1 (S. cerevisiae) [Source:MarkerSymbol;Acc:MGI:2136690] BY ORTHOLOGY TO:ENSMUST00000046516
17.3878 -24.61 0.0186812 1300 3 1 4 [+] picture button
CBG08807 ENSCBRT00000000550 F39G3.2 [Source:RefSeq_peptide;Acc:NP_504273]F39G3.2 [Source:RefSeq_peptide;Acc:NP_504273] BY ORTHOLOGY TO:F39G3.2
17.3864 -17.91 0.0187155 1300 4 1 4 [+] picture button
CBG02447 ENSCBRT00000006535 C17G10.3 [Source:RefSeq_peptide;Acc:NP_495082]C17G10.3 [Source:RefSeq_peptide;Acc:NP_495082] BY ORTHOLOGY TO:C17G10.3
17.3624 -17.51 0.0192931 1300 6 1 6 [+] picture button
CBG14913 ENSCBRT00000004484 F55F8.9 [Source:RefSeq_peptide;Acc:NP_491660]F55F8.9 [Source:RefSeq_peptide;Acc:NP_491660] BY ORTHOLOGY TO:F55F8.9
17.3213 -18.68 0.0203246 1300 3 1 3 [+] picture button
CBG02800 ENSCBRT00000006152 F18A11.2 [Source:RefSeq_peptide;Acc:NP_496771]F18A11.2 [Source:RefSeq_peptide;Acc:NP_496771] BY ORTHOLOGY TO:F18A11.2
17.263 -19.67 0.0218793 1300 2 1 3 [+] picture button
CBG20223 ENSCBRT00000001480 The cam-1 gene encodes a receptor tyrosine kinase of the immunoglobulin superfamily that is orthologous to human ROR1 (OMIM:602336) and ROR2 (OMIM:602337, mutation of which leads to type B brachydactyly) and is required for locomotion, cell migration, asymmetric cell division, axon outgrowth, and dauer formation. CAM-1 is broadly expressed during embryogenesis and larval development with expression first appearing at the 200-cell stage of embryogenesis. [Source: WormBase]The cam-1 gene encodes a receptor tyrosine kinase of the immunoglobulin superfamily that is orthologous to human ROR1 (OMIM:602336) and ROR2 (OMIM:602337, mutation of which leads to type B brachydactyly) and is required for locomotion, cell migration, asymmetric cell division, axon outgrowth, and dauer formation. CAM-1 is broadly expressed during embryogenesis and larval development with expression first appearing at the 200-cell stage of embryogenesis. [Source: WormBase] BY ORTHOLOGY TO:C01G6.8a
17.2593 -19.73 0.0219828 1300 2 1 3 [+] picture button
CBG24040 ENSCBRT00000009805 Uncharacterized kinase-like protein D1044.1. [Source:Uniprot/SWISSPROT;Acc:P41949]Uncharacterized kinase-like protein D1044.1. [Source:Uniprot/SWISSPROT;Acc:P41949] BY ORTHOLOGY TO:D1044.1
17.2383 -15.32 0.022571 1300 2 1 2 [+] picture button
CBG23298 ENSCBRT00000012346 rap GTPase-activating proteinrap GTPase-activating protein BY ORTHOLOGY TO:AAEL002206-RA
17.2354 -21.75 0.0226556 1300 9 2 11 [+] picture button
CBG22037 ENSCBRT00000004345 Y37E3.13 [Source:RefSeq_peptide;Acc:NP_490933]Y37E3.13 [Source:RefSeq_peptide;Acc:NP_490933] BY ORTHOLOGY TO:Y37E3.13
17.2277 -12.77 0.0228753 1300 4 1 4 [+] picture button
CBG03996 ENSCBRT00000006709 Sperm-specific class P protein 16. [Source:Uniprot/SWISSPROT;Acc:P91499]Sperm-specific class P protein 16. [Source:Uniprot/SWISSPROT;Acc:P91499] BY ORTHOLOGY TO:T27A3.3
17.2134 -20.41 0.023294 1300 1 1 1 [+] picture button

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