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Target Listing


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Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cel-miR-257

129 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG15195 ENSCBRT00000010374 Y40D12A.2 [Source:RefSeq_peptide;Acc:NP_498460]Y40D12A.2 [Source:RefSeq_peptide;Acc:NP_498460] BY ORTHOLOGY TO:Y40D12A.2
15.1055 -21 1e-06 1300 5 1 2 [+] picture button
CBG12785 ENSCBRT00000013701 B0511.14a [Source:RefSeq_peptide;Acc:NP_492791]B0511.14a [Source:RefSeq_peptide;Acc:NP_492791] BY ORTHOLOGY TO:B0511.14a
15.6033 -19.21 0.000117749 1300 5 1 3 [+] picture button
CBG00864 ENSCBRT00000003967 growth arrest specific 1 [Source:MarkerSymbol;Acc:MGI:95655]growth arrest specific 1 [Source:MarkerSymbol;Acc:MGI:95655] BY ORTHOLOGY TO:ENSMUST00000065086
16.1512 -17.55 0.000568886 1300 6 1 9 [+] picture button
CBG06222 ENSCBRT00000008255 Lin-48 expression abnormal protein. [Source:Uniprot/SPTREMBL;Acc:Q3YFF5]Lin-48 expression abnormal protein. [Source:Uniprot/SPTREMBL;Acc:Q3YFF5] BY ORTHOLOGY TO:F11A10.1
16.2848 -19.65 0.000732832 1300 5 2 5 [+] picture button
CBG00735 ENSCBRT00000000730 Serpentine receptor class epsilon-2 (Protein sre-2). [Source:Uniprot/SWISSPROT;Acc:Q09273]Serpentine receptor class epsilon-2 (Protein sre-2). [Source:Uniprot/SWISSPROT;Acc:Q09273] BY ORTHOLOGY TO:C41C4.2
16.3412 -21.57 0.000863069 1300 2 1 1 [+] picture button
CBG05120 ENSCBRT00000010283 Y65B4BR.2 [Source:RefSeq_peptide;Acc:NP_490752]Y65B4BR.2 [Source:RefSeq_peptide;Acc:NP_490752] BY ORTHOLOGY TO:Y65B4BR.2
15.9054 -15.23 0.0015133 1300 6 1 6 [+] picture button
CBG00959 ENSCBRT00000002264 Poly(ADP-ribose) polymerase pme-2 (EC 2.4.2.30) (Poly ADP-ribose metabolism enzyme 2). [Source:Uniprot/SWISSPROT;Acc:Q09525]Poly(ADP-ribose) polymerase pme-2 (EC 2.4.2.30) (Poly ADP-ribose metabolism enzyme 2). [Source:Uniprot/SWISSPROT;Acc:Q09525] BY ORTHOLOGY TO:E02H1.4
15.9033 -17.28 0.00151989 1300 2 1 2 [+] picture button
CBG18436 ENSCBRT00000000992 DNA replication licensing factor MCM2 (Minichromosome maintenance protein 2 homolog) (Nuclear protein BM28). [Source:Uniprot/SWISSPROT;Acc:P49736]DNA replication licensing factor MCM2 (Minichromosome maintenance protein 2 homolog) (Nuclear protein BM28). [Source:Uniprot/SWISSPROT;Acc:P49736] BY ORTHOLOGY TO:ENSGACT00000000041
15.9731 -17.06 0.0018393 1300 4 2 4 [+] picture button
CBG05147 ENSCBRT00000010322 F56A6.4 [Source:RefSeq_peptide;Acc:NP_490757]F56A6.4 [Source:RefSeq_peptide;Acc:NP_490757] BY ORTHOLOGY TO:F56A6.4
15.7691 -19.26 0.0023324 1300 3 1 2 [+] picture button
CBG20648 ENSCBRT00000001365 Glutathione S-Transferase family member (gst-39) [Source:RefSeq_peptide;Acc:NP_497119]Glutathione S-Transferase family member (gst-39) [Source:RefSeq_peptide;Acc:NP_497119] BY ORTHOLOGY TO:Y53F4B.33
15.5928 -22.11 0.00289306 1300 6 1 8 [+] picture button
CBG07112 ENSCBRT00000012074 Y57G7A.9 [Source:RefSeq_peptide;Acc:NP_493944]Y57G7A.9 [Source:RefSeq_peptide;Acc:NP_493944] BY ORTHOLOGY TO:Y57G7A.9
15.9118 -20.3 0.00313833 1300 3 1 2 [+] picture button
CBG15360 ENSCBRT00000010162 Serpentine Receptor, class I family member (sri-11) [Source:RefSeq_peptide;Acc:NP_492979]Serpentine Receptor, class I family member (sri-11) [Source:RefSeq_peptide;Acc:NP_492979] BY ORTHOLOGY TO:T22H2.3
16.1217 -17.84 0.00324683 1300 2 1 3 [+] picture button
CBG11373 ENSCBRT00000013786 Seven TM Receptor family member (str-144) [Source:RefSeq_peptide;Acc:NP_505082]Seven TM Receptor family member (str-144) [Source:RefSeq_peptide;Acc:NP_505082] BY ORTHOLOGY TO:C09H5.5
15.1055 -21.34 0.00398809 1300 3 1 4 [+] picture button
ENSCBRT00000005548 Hypothetical protein MGC76137. [Source:Uniprot/SPTREMBL;Acc:Q6P624]Hypothetical protein MGC76137. [Source:Uniprot/SPTREMBL;Acc:Q6P624] BY ORTHOLOGY TO:ENSXETT00000001134
15.3979 -12.96 0.00398809 1300 4 1 3 [+] picture button
CBG00116 ENSCBRT00000001546 F45E6.4 [Source:RefSeq_peptide;Acc:NP_510096]F45E6.4 [Source:RefSeq_peptide;Acc:NP_510096] BY ORTHOLOGY TO:F45E6.4
15.6032 -14.63 0.00400922 1300 2 1 3 [+] picture button
CBG09409 ENSCBRT00000006417 Guanine nucleotide-binding protein alpha-17 subunit (Odorant response abnormal protein 3). [Source:Uniprot/SWISSPROT;Acc:Q18434]Guanine nucleotide-binding protein alpha-17 subunit (Odorant response abnormal protein 3). [Source:Uniprot/SWISSPROT;Acc:Q18434] BY ORTHOLOGY TO:C34D1.3
15.7009 -26.02 0.00436489 1300 2 1 2 [+] picture button
CBG16718 ENSCBRT00000012802 ceh-14 encodes a LIM homeodomain protein orthologous to Drosophila Lim3 and the vertebrate Lhx3 and Lhx4 proteins. ceh-14 is required for specification of the AFD thermosensory neurons and for normal thermotactic behavior. a ceh-14::GFP reporter fusion is expressed in head and tail neurons, including the AFD thermosensory neurons, during late embryonic, larval, and adult stages. Animals triply mutant for the LIM homeobox genes ceh-14, lin-11, and ttx-3 which are required for function of the AFD, AIZ, and AIY neurons, respectively, exhibit a basic cryophilic thermotaxis response suggesting that, in C. elegans, there is more than one pathway for integration of thermosensory input. [Source: WormBase]ceh-14 encodes a LIM homeodomain protein orthologous to Drosophila Lim3 and the vertebrate Lhx3 and Lhx4 proteins. ceh-14 is required for specification of the AFD thermosensory neurons and for normal thermotactic behavior. a ceh-14::GFP reporter fusion is expressed in head and tail neurons, including the AFD thermosensory neurons, during late embryonic, larval, and adult stages. Animals triply mutant for the LIM homeobox genes ceh-14, lin-11, and ttx-3 which are required for function of the AFD, AIZ, and AIY neurons, respectively, exhibit a basic cryophilic thermotaxis response suggesting that, in C. elegans, there is more than one pathway for integration of thermosensory input. [Source: WormBase] BY ORTHOLOGY TO:F46C8.5
15.361 -14.09 0.00464113 1300 4 1 6 [+] picture button
CBG07909 ENSCBRT00000004840 U5 small nuclear ribonucleoprotein 200 kDa helicase (EC 3.6.1.-) (U5 snRNP-specific 200 kDa protein) (U5-200KD) (Activating signal cointegrator 1 complex subunit 3-like 1) (BRR2 homolog). [Source:Uniprot/SWISSPROT;Acc:O75643]U5 small nuclear ribonucleoprotein 200 kDa helicase (EC 3.6.1.-) (U5 snRNP-specific 200 kDa protein) (U5-200KD) (Activating signal cointegrator 1 complex subunit 3-like 1) (BRR2 homolog). [Source:Uniprot/SWISSPROT;Acc:O75643] BY ORTHOLOGY TO:ENSXETT00000002684
17.8163 -28.83 0.00504523 1300 1 1 1 [+] picture button
CBG01025 ENSCBRT00000002121 F52H3.6 [Source:RefSeq_peptide;Acc:NP_496167]F52H3.6 [Source:RefSeq_peptide;Acc:NP_496167] BY ORTHOLOGY TO:F52H3.6
15.2121 -14.29 0.00626113 1300 3 1 3 [+] picture button
CBG16602 ENSCBRT00000014548 Geranylgeranyl transferase type-2 subunit beta (EC 2.5.1.60) (Geranylgeranyl transferase type II subunit beta) (Rab geranylgeranyltransferase subunit beta) (Rab geranyl- geranyltransferase subunit beta) (Rab GG transferase beta) (Rab GGTase beta). [Source:Uniprot/SWISSPROT;Acc:P53611]Geranylgeranyl transferase type-2 subunit beta (EC 2.5.1.60) (Geranylgeranyl transferase type II subunit beta) (Rab geranylgeranyltransferase subunit beta) (Rab geranyl- geranyltransferase subunit beta) (Rab GG transferase beta) (Rab GGTase beta). [Source:Uniprot/SWISSPROT;Acc:P53611] BY ORTHOLOGY TO:ENST00000370825
15.4071 -15.76 0.00676989 1300 2 1 2 [+] picture button
CBG08753 ENSCBRT00000005223 Y105E8A.14 [Source:RefSeq_peptide;Acc:NP_740943]Y105E8A.14 [Source:RefSeq_peptide;Acc:NP_740943] BY ORTHOLOGY TO:Y105E8A.14
17.524 -25.19 0.00691982 1300 1 1 1 [+] picture button
CBG11184 ENSCBRT00000014436 Peptidyl-prolyl cis-trans isomerase-like 3 (EC 5.2.1.8) (PPIase) (Rotamase) (Cyclophilin-like protein PPIL3) (Cyclophilin J) (CyPJ). [Source:Uniprot/SWISSPROT;Acc:Q9H2H8]Peptidyl-prolyl cis-trans isomerase-like 3 (EC 5.2.1.8) (PPIase) (Rotamase) (Cyclophilin-like protein PPIL3) (Cyclophilin J) (CyPJ). [Source:Uniprot/SWISSPROT;Acc:Q9H2H8] BY ORTHOLOGY TO:ENSOANT00000012822
15.9288 -28.26 0.00729128 1300 4 2 4 [+] picture button
CBG08830 ENSCBRT00000000540 Leucine-rich repeat and IQ domain-containing protein 2. [Source:Uniprot/SWISSPROT;Acc:Q8IW35]Leucine-rich repeat and IQ domain-containing protein 2. [Source:Uniprot/SWISSPROT;Acc:Q8IW35] BY ORTHOLOGY TO:ENSMMUT00000009163
15.2431 -14.63 0.00753376 1300 2 1 2 [+] picture button
CBG07429 ENSCBRT00000011089 F18H3.4 [Source:RefSeq_peptide;Acc:NP_510261]F18H3.4 [Source:RefSeq_peptide;Acc:NP_510261] BY ORTHOLOGY TO:F18H3.4
15.4435 -16.67 0.00760378 1300 7 1 8 [+] picture button
CBG24150 ENSCBRT00000004069 T21D11.1 [Source:RefSeq_peptide;Acc:NP_498599]T21D11.1 [Source:RefSeq_peptide;Acc:NP_498599] BY ORTHOLOGY TO:T21D11.1
15.5928 -17.94 0.00763029 1300 4 2 6 [+] picture button
CBG17019 ENSCBRT00000011921 C12D5.10 [Source:RefSeq_peptide;Acc:NP_504992]C12D5.10 [Source:RefSeq_peptide;Acc:NP_504992] BY ORTHOLOGY TO:C12D5.10
15.1125 -18.32 0.00763244 1300 2 1 2 [+] picture button
CBG24495 ENSCBRT00000011173 conserved hypothetical proteinconserved hypothetical protein BY ORTHOLOGY TO:AAEL007697-RA
15.203 -14.67 0.00782137 1300 4 1 6 [+] picture button
CBG09340 ENSCBRT00000006351 C-type LECtin family member (clec-1) [Source:RefSeq_peptide;Acc:NP_504500]C-type LECtin family member (clec-1) [Source:RefSeq_peptide;Acc:NP_504500] BY ORTHOLOGY TO:F25B4.9
15.203 -15.16 0.00803578 1300 5 2 5 [+] picture button
CBG15658 ENSCBRT00000011923 H14E04.1 [Source:RefSeq_peptide;Acc:NP_497549]H14E04.1 [Source:RefSeq_peptide;Acc:NP_497549] BY ORTHOLOGY TO:H14E04.1
15.2882 -19.5 0.00819813 1300 6 2 5 [+] picture button
CBG04201 ENSCBRT00000007598 arx-7 encodes the C. elegans ortholog of the p16Arc subunit of the actin-related protein (Arp)2/3 complex. [Source: WormBase]arx-7 encodes the C. elegans ortholog of the p16Arc subunit of the actin-related protein (Arp)2/3 complex. [Source: WormBase] BY ORTHOLOGY TO:M01B12.3
15.0761 -12.2 0.00854044 1300 3 2 8 [+] picture button
CBG23205 ENSCBRT00000012158 F57B7.3 [Source:RefSeq_peptide;Acc:NP_505902]F57B7.3 [Source:RefSeq_peptide;Acc:NP_505902] BY ORTHOLOGY TO:F57B7.3
15.6104 -17.09 0.00879107 1300 4 1 5 [+] picture button
CBG23290 ENSCBRT00000012336 F46F3.3 [Source:RefSeq_peptide;Acc:NP_505953]F46F3.3 [Source:RefSeq_peptide;Acc:NP_505953] BY ORTHOLOGY TO:F46F3.3
15.3108 -14.16 0.00910163 1300 2 2 3 [+] picture button
CBG12323 ENSCBRT00000013211 F55A12.2a [Source:RefSeq_peptide;Acc:NP_740851]F55A12.2a [Source:RefSeq_peptide;Acc:NP_740851] BY ORTHOLOGY TO:F55A12.2c
17.2612 -27.65 0.00918697 1300 3 2 3 [+] picture button
CBG08311 ENSCBRT00000012972 CC8.1 [Source:RefSeq_peptide;Acc:NP_500390]CC8.1 [Source:RefSeq_peptide;Acc:NP_500390] BY ORTHOLOGY TO:CC8.1
15.0562 -15.6 0.009228 1300 3 1 3 [+] picture button
CBG08579 ENSCBRT00000002837 C15C8.6 [Source:RefSeq_peptide;Acc:NP_506189]C15C8.6 [Source:RefSeq_peptide;Acc:NP_506189] BY ORTHOLOGY TO:C15C8.6
16.4577 -17.02 0.00958994 1300 2 1 2 [+] picture button
CBG20700 ENSCBRT00000001396 Temporarily Assigned Gene name family member (tag-336) [Source:RefSeq_peptide;Acc:NP_507640]Temporarily Assigned Gene name family member (tag-336) [Source:RefSeq_peptide;Acc:NP_507640] BY ORTHOLOGY TO:Y69H2.12
17.1692 -12.01 0.0101436 1300 5 1 8 [+] picture button
CBG01450 ENSCBRT00000001901 ZC190.2 [Source:RefSeq_peptide;Acc:NP_505236]ZC190.2 [Source:RefSeq_peptide;Acc:NP_505236] BY ORTHOLOGY TO:ZC190.2
17.1692 -13.3 0.0101436 1300 5 1 8 [+] picture button
CBG20781 ENSCBRT00000001342 hypothetical protein LOC427256 [Source:RefSeq_peptide;Acc:NP_001026596]hypothetical protein LOC427256 [Source:RefSeq_peptide;Acc:NP_001026596] BY ORTHOLOGY TO:ENSGALT00000038148
17.0922 -31.11 0.0110196 1300 1 1 1 [+] picture button
CBG01639 ENSCBRT00000005524 frm-5 encodes a protein that contains a FERM (Band 4.1-ezrin-radixin-moesin) domain near the center of the molecule and two C-terminal PDZ domains. by homology, FRM-5 is predicted to function as a membrane-cytoskeleton linker protein that plays a role in cell adhesion, migration, or organization of cell surface structures. however, as loss of frm-5 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of FRM-5 in C. elegans development and/or behavior is not yet known. the FRM-5 FERM and PDZ domains are most similar to those found in cytoplasmic protein tyrosine phosphatases, even though FRM-5 does not appear to be a phosphatase. [Source: WormBase]frm-5 encodes a protein that contains a FERM (Band 4.1-ezrin-radixin-moesin) domain near the center of the molecule and two C-terminal PDZ domains. by homology, FRM-5 is predicted to function as a membrane-cytoskeleton linker protein that plays a role in cell adhesion, migration, or organization of cell surface structures. however, as loss of frm-5 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of FRM-5 in C. elegans development and/or behavior is not yet known. the FRM-5 FERM and PDZ domains are most similar to those found in cytoplasmic protein tyrosine phosphatases, even though FRM-5 does not appear to be a phosphatase. [Source: WormBase] BY ORTHOLOGY TO:Y38C1AB.8
17.0546 -14.12 0.0114739 1300 3 1 4 [+] picture button
CBG06842 ENSCBRT00000007268 eukaryotic translation initiation factor 3 subuniteukaryotic translation initiation factor 3 subunit BY ORTHOLOGY TO:AAEL009902-RA
17.0546 -29.82 0.0114739 1300 3 1 6 [+] picture button
CBG08093 ENSCBRT00000003570 F35H12.6 [Source:RefSeq_peptide;Acc:NP_741711]F35H12.6 [Source:RefSeq_peptide;Acc:NP_741711] BY ORTHOLOGY TO:F35H12.6
16.8174 -23.81 0.0147981 1300 3 2 2 [+] picture button
CBG23204 ENSCBRT00000012159 CG9850-PB, isoform B [Source:RefSeq_peptide;Acc:NP_001027572]CG9850-PB, isoform B [Source:RefSeq_peptide;Acc:NP_001027572] BY ORTHOLOGY TO:CG9850-RA
15.226 -34.44 0.0159262 1300 4 2 3 [+] picture button
CBG07246 ENSCBRT00000011850 lethal (3) 70Da CG6760-PA [Source:RefSeq_peptide;Acc:NP_652016]lethal (3) 70Da CG6760-PA [Source:RefSeq_peptide;Acc:NP_652016] BY ORTHOLOGY TO:CG6760-RA
16.6648 -16.26 0.0174236 1300 4 1 4 [+] picture button
CBG05152 ENSCBRT00000010320 Y18H1A.3 [Source:RefSeq_peptide;Acc:NP_490772]Y18H1A.3 [Source:RefSeq_peptide;Acc:NP_490772] BY ORTHOLOGY TO:Y18H1A.3
16.6496 -19.93 0.0177086 1300 4 1 4 [+] picture button
CBG12500 ENSCBRT00000014323 F43G9.5 encodes a NUDIX hydrolase that is a (perhaps evolutionarily conserved) target of transcriptional activation by DAF-16. loss of F43G9.5 function has no obvious effect on lifespan, dauer formation, or fat storage. [Source: WormBase]F43G9.5 encodes a NUDIX hydrolase that is a (perhaps evolutionarily conserved) target of transcriptional activation by DAF-16. loss of F43G9.5 function has no obvious effect on lifespan, dauer formation, or fat storage. [Source: WormBase] BY ORTHOLOGY TO:F43G9.5
16.6479 -21.16 0.0177397 1300 1 1 1 [+] picture button
CBG10031 ENSCBRT00000007307 F58A4.6 [Source:RefSeq_peptide;Acc:NP_499127]F58A4.6 [Source:RefSeq_peptide;Acc:NP_499127] BY ORTHOLOGY TO:F58A4.6
16.5773 -23.14 0.019128 1300 6 1 7 [+] picture button
CBG20671 ENSCBRT00000001449 Glutathione S-Transferase family member (gst-20) [Source:RefSeq_peptide;Acc:NP_496858]Glutathione S-Transferase family member (gst-20) [Source:RefSeq_peptide;Acc:NP_496858] BY ORTHOLOGY TO:Y48E1B.10
16.5513 -20.29 0.0196655 1300 2 1 2 [+] picture button
CBG04601 ENSCBRT00000010490 C-type LECtin family member (clec-54) [Source:RefSeq_peptide;Acc:NP_506590]C-type LECtin family member (clec-54) [Source:RefSeq_peptide;Acc:NP_506590] BY ORTHOLOGY TO:F08H9.8
16.3934 -23.09 0.023261 1300 3 1 3 [+] picture button
CBG08628 ENSCBRT00000002967 Serpentine Receptor, class SX family member (srsx-3) [Source:RefSeq_peptide;Acc:NP_505041]Serpentine Receptor, class SX family member (srsx-3) [Source:RefSeq_peptide;Acc:NP_505041] BY ORTHOLOGY TO:Y97E10B.9
16.3922 -26.81 0.0232918 1300 3 1 4 [+] picture button
CBG11009 ENSCBRT00000001186 unc-10 encodes a protein with zinc-finger, Q/N-rich, PDZ, and C2 domains that is homologous to vertebrate Rim1, a presynaptic protein which binds, and effects the activity of, synaptic vesicle-associated GTP-Rab3. UNC-10 is required for normal locomotion and synaptic transmission, and localizes to a subdomain of presynaptic termini, where it probably acts to regulate the priming step of presynaptic vesicle fusion by promoting conformational changes in syntaxin. [Source: WormBase]unc-10 encodes a protein with zinc-finger, Q/N-rich, PDZ, and C2 domains that is homologous to vertebrate Rim1, a presynaptic protein which binds, and effects the activity of, synaptic vesicle-associated GTP-Rab3. UNC-10 is required for normal locomotion and synaptic transmission, and localizes to a subdomain of presynaptic termini, where it probably acts to regulate the priming step of presynaptic vesicle fusion by promoting conformational changes in syntaxin. [Source: WormBase] BY ORTHOLOGY TO:T10A3.1a
16.3685 -21.54 0.0238863 1300 3 2 9 [+] picture button

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