spacer

Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cel-miR-256

133 hits found.


Page 1 of 3
1 2 3 next >>

Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
picture button picture button picture button picture button picture button picture button picture button picture button picture button picture button
CBG04128 ENSCBRT00000010048 crs-1 encodes a predicted cytoplasmic cysteinyl-tRNA synthetase (CysRS), a class I aminoacyl-tRNA synthetase that catalyzes the attachment of cysteine to its cognate tRNA and is thus required for protein biosynthesis. CRS-1 is essential for embryonic and larval development, and is required for molting and a normal rate of postembryonic development. [Source: WormBase]crs-1 encodes a predicted cytoplasmic cysteinyl-tRNA synthetase (CysRS), a class I aminoacyl-tRNA synthetase that catalyzes the attachment of cysteine to its cognate tRNA and is thus required for protein biosynthesis. CRS-1 is essential for embryonic and larval development, and is required for molting and a normal rate of postembryonic development. [Source: WormBase] BY ORTHOLOGY TO:Y23H5A.7b
17.3748 -13.95 1e-06 1300 10 1 14 [+] picture button
CBG24013 ENSCBRT00000009538 F36D1.8 [Source:RefSeq_peptide;Acc:NP_492891]F36D1.8 [Source:RefSeq_peptide;Acc:NP_492891] BY ORTHOLOGY TO:F36D1.8
16.6128 -20.09 0.000803234 1300 6 1 8 [+] picture button
CBG06440 ENSCBRT00000010945 fhod-2 encodes an ortholog of Drosophila DAAM and human DAAM1 (OMIM:606626). FHOD-2 enables Wnt-directed planar cell polarity. FHOD-2 is required for the fully asymmetrical division of B.a versus B.p cells, though this requirement is quantitatively weak. [Source: WormBase]fhod-2 encodes an ortholog of Drosophila DAAM and human DAAM1 (OMIM:606626). FHOD-2 enables Wnt-directed planar cell polarity. FHOD-2 is required for the fully asymmetrical division of B.a versus B.p cells, though this requirement is quantitatively weak. [Source: WormBase] BY ORTHOLOGY TO:F56E10.2
16.2143 -21.19 0.0012104 1300 2 2 2 [+] picture button
CBG13414 ENSCBRT00000009426 T05A7.7 [Source:RefSeq_peptide;Acc:NP_494829]T05A7.7 [Source:RefSeq_peptide;Acc:NP_494829] BY ORTHOLOGY TO:T05A7.7
15.9473 -16.91 0.0017494 1300 5 1 4 [+] picture button
CBG15796 ENSCBRT00000012191 Y55B1BR.2 [Source:RefSeq_peptide;Acc:NP_497199]Y55B1BR.2 [Source:RefSeq_peptide;Acc:NP_497199] BY ORTHOLOGY TO:Y55B1BR.2
15.9888 -19.21 0.00186138 1300 1 1 1 [+] picture button
ENSCBRT00000004836 Y46G5A.10 [Source:RefSeq_peptide;Acc:NP_496715]Y46G5A.10 [Source:RefSeq_peptide;Acc:NP_496715] BY ORTHOLOGY TO:Y46G5A.10
15.5276 -20.27 0.00226882 1300 9 1 5 [+] picture button
CBG22475 ENSCBRT00000005123 conserved hypothetical proteinconserved hypothetical protein BY ORTHOLOGY TO:AAEL000336-RA
15.9212 -13.15 0.00230184 1300 5 1 6 [+] picture button
CBG05826 ENSCBRT00000009068 C06E4.2 [Source:RefSeq_peptide;Acc:NP_501158]C06E4.2 [Source:RefSeq_peptide;Acc:NP_501158] BY ORTHOLOGY TO:C06E4.2
15.8716 -16.91 0.00242601 1300 1 2 1 [+] picture button
CBG12253 ENSCBRT00000013318 Ubiquitin-fold modifier 1 precursor. [Source:Uniprot/SWISSPROT;Acc:P61960]Ubiquitin-fold modifier 1 precursor. [Source:Uniprot/SWISSPROT;Acc:P61960] BY ORTHOLOGY TO:ENSOANT00000024425
15.7659 -11.8 0.00270445 1300 2 1 2 [+] picture button
CBG03999 ENSCBRT00000009951 C41D11.7 [Source:RefSeq_peptide;Acc:NP_491374]C41D11.7 [Source:RefSeq_peptide;Acc:NP_491374] BY ORTHOLOGY TO:C41D11.7
15.6744 -24.04 0.00307728 1300 3 1 2 [+] picture button
CBG00536 ENSCBRT00000003069 T22C8.1 [Source:RefSeq_peptide;Acc:NP_495829]T22C8.1 [Source:RefSeq_peptide;Acc:NP_495829] BY ORTHOLOGY TO:T22C8.1
15.8774 -16.06 0.00313365 1300 5 1 4 [+] picture button
CBG21896 ENSCBRT00000008230 UPF0392 protein F13G3.3. [Source:Uniprot/SWISSPROT;Acc:Q19417]UPF0392 protein F13G3.3. [Source:Uniprot/SWISSPROT;Acc:Q19417] BY ORTHOLOGY TO:F13G3.3
15.7517 -22.86 0.00323531 1300 1 2 1 [+] picture button
CBG17729 ENSCBRT00000000173 Onchocerca Related Antigen family member (ora-1) [Source:RefSeq_peptide;Acc:NP_501334]Onchocerca Related Antigen family member (ora-1) [Source:RefSeq_peptide;Acc:NP_501334] BY ORTHOLOGY TO:F57H12.3
15.6452 -16.85 0.00347855 1300 6 1 8 [+] picture button
CBG17557 ENSCBRT00000002106 F47B10.8 [Source:RefSeq_peptide;Acc:NP_509823]F47B10.8 [Source:RefSeq_peptide;Acc:NP_509823] BY ORTHOLOGY TO:F47B10.8
15.6638 -20.52 0.00358948 1300 3 1 5 [+] picture button
CBG05771 ENSCBRT00000009131 Zinc metalloproteinase nas-8 precursor (EC 3.4.24.21) (Nematode astacin 8). [Source:Uniprot/SWISSPROT;Acc:Q18439]Zinc metalloproteinase nas-8 precursor (EC 3.4.24.21) (Nematode astacin 8). [Source:Uniprot/SWISSPROT;Acc:Q18439] BY ORTHOLOGY TO:C34D4.9
15.684 -21.71 0.00368802 1300 8 2 12 [+] picture button
CBG06743 ENSCBRT00000009629 Serpentine Receptor, class H family member (srh-18) [Source:RefSeq_peptide;Acc:NP_506301]Serpentine Receptor, class H family member (srh-18) [Source:RefSeq_peptide;Acc:NP_506301] BY ORTHOLOGY TO:C50B6.5
15.5753 -19.4 0.00402017 1300 2 1 2 [+] picture button
CBG18148 ENSCBRT00000003321 ZK353.2 [Source:RefSeq_peptide;Acc:NP_498853]ZK353.2 [Source:RefSeq_peptide;Acc:NP_498853] BY ORTHOLOGY TO:ZK353.2
15.5919 -16.14 0.00445568 1300 4 2 4 [+] picture button
ENSCBRT00000000276 T25D1.2 [Source:RefSeq_peptide;Acc:NP_510678]T25D1.2 [Source:RefSeq_peptide;Acc:NP_510678] BY ORTHOLOGY TO:T25D1.2
17.9184 -17.35 0.00506339 1300 8 1 12 [+] picture button
CBG05832 ENSCBRT00000009063 grl-4 encodes a hedgehog-like protein, with an N-terminal signal sequence, a central proline-rich low-complexity region, and a C-terminal Ground-like (Grl) domain. GRL-4 is expressed in pharynx, reproductive system, vulva, larval neurons, and larval rectal epithelium. the Grl domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins. [Source: WormBase]grl-4 encodes a hedgehog-like protein, with an N-terminal signal sequence, a central proline-rich low-complexity region, and a C-terminal Ground-like (Grl) domain. GRL-4 is expressed in pharynx, reproductive system, vulva, larval neurons, and larval rectal epithelium. the Grl domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins. [Source: WormBase] BY ORTHOLOGY TO:F42C5.7
15.5448 -20 0.00547205 1300 5 2 5 [+] picture button
CBG20858 ENSCBRT00000001285 C01G12.1 [Source:RefSeq_peptide;Acc:NP_497028]C01G12.1 [Source:RefSeq_peptide;Acc:NP_497028] BY ORTHOLOGY TO:C01G12.1
15.4734 -21.56 0.0060197 1300 7 1 12 [+] picture button
CBG23355 ENSCBRT00000011471 F10C2.3 [Source:RefSeq_peptide;Acc:NP_506015]F10C2.3 [Source:RefSeq_peptide;Acc:NP_506015] BY ORTHOLOGY TO:F10C2.3
15.5935 -15.77 0.00612861 1300 3 2 4 [+] picture button
CBG13737 ENSCBRT00000012724 Polycystic kidney disease 2-like 1 protein (Polycystin-L) (Polycystin- 2 homolog). [Source:Uniprot/SWISSPROT;Acc:Q9P0L9]Polycystic kidney disease 2-like 1 protein (Polycystin-L) (Polycystin- 2 homolog). [Source:Uniprot/SWISSPROT;Acc:Q9P0L9] BY ORTHOLOGY TO:SINFRUT00000137781
15.3719 -14.03 0.00618035 1300 5 1 7 [+] picture button
CBG13333 ENSCBRT00000009505 Serine/threonine-protein kinase/endoribonuclease IRE2 precursor (Inositol-requiring protein 2) (hIRE2p) (IRE1b) (Ire1-beta) (Endoplasmic reticulum-to-nucleus signaling 2) [Includes: Serine/threonine-protein kinase (EC 2.7.11.1); Endoribonuclease (EC 3.1.2 [Source:Uniprot/SWISSPROT;Acc:Q76MJ5]Serine/threonine-protein kinase/endoribonuclease IRE2 precursor (Inositol-requiring protein 2) (hIRE2p) (IRE1b) (Ire1-beta) (Endoplasmic reticulum-to-nucleus signaling 2) [Includes: Serine/threonine-protein kinase (EC 2.7.11.1); Endoribonuclease (EC 3.1.2 [Source:Uniprot/SWISSPROT;Acc:Q76MJ5] BY ORTHOLOGY TO:ENSPTRT00000014545
15.9783 -17.43 0.00626499 1300 5 1 5 [+] picture button
CBG15628 ENSCBRT00000010206 T28C6.8 [Source:RefSeq_peptide;Acc:NP_501529]T28C6.8 [Source:RefSeq_peptide;Acc:NP_501529] BY ORTHOLOGY TO:T28C6.8
15.4588 -18.25 0.00627154 1300 1 2 1 [+] picture button
CBG19245 ENSCBRT00000013449 ZK682.5 [Source:RefSeq_peptide;Acc:NP_505402]ZK682.5 [Source:RefSeq_peptide;Acc:NP_505402] BY ORTHOLOGY TO:ZK682.5
15.8596 -17.95 0.00675695 1300 2 2 2 [+] picture button
CBG02311 ENSCBRT00000006700 structural maintenance of chromosomes 5 [Source:MarkerSymbol;Acc:MGI:2385088]structural maintenance of chromosomes 5 [Source:MarkerSymbol;Acc:MGI:2385088] BY ORTHOLOGY TO:ENSMUST00000036334
17.6106 -23.35 0.00710008 1300 5 1 5 [+] picture button
CBG04323 ENSCBRT00000007693 Serpentine receptor class alpha-31 (Protein sra-31). [Source:Uniprot/SWISSPROT;Acc:Q18881]Serpentine receptor class alpha-31 (Protein sra-31). [Source:Uniprot/SWISSPROT;Acc:Q18881] BY ORTHOLOGY TO:C56C10.5
15.2849 -13.71 0.00727435 1300 6 1 6 [+] picture button
CBG24747 ENSCBRT00000008972 T06A1.1 [Source:RefSeq_peptide;Acc:NP_503533]T06A1.1 [Source:RefSeq_peptide;Acc:NP_503533] BY ORTHOLOGY TO:T06A1.1
15.6602 -13.91 0.00738834 1300 9 1 13 [+] picture button
CBG05103 ENSCBRT00000010310 bli-3 encodes a large homolog of dual oxidase ('Ce-Duox1'), with an N-terminal peroxidase domain, two central calmodulin-binding EF hands, and a C-terminal superoxide-generating NADPH-oxidase domain. BLI-3 is required for dityrosine cross-linking of collagen, and thus for cuticular integrity. BLI-3 is thought to use cytosolic NADPH to generate reactive oxygen, which then drives the peroxidase ectodomain to cross-link free tyrosine in collagen. BLI-3 is expressed exclusively in hypodermal cells at low levels, with peaks of expression corresponding to collagen/cuticle biosynthesis. [Source: WormBase]bli-3 encodes a large homolog of dual oxidase ('Ce-Duox1'), with an N-terminal peroxidase domain, two central calmodulin-binding EF hands, and a C-terminal superoxide-generating NADPH-oxidase domain. BLI-3 is required for dityrosine cross-linking of collagen, and thus for cuticular integrity. BLI-3 is thought to use cytosolic NADPH to generate reactive oxygen, which then drives the peroxidase ectodomain to cross-link free tyrosine in collagen. BLI-3 is expressed exclusively in hypodermal cells at low levels, with peaks of expression corresponding to collagen/cuticle biosynthesis. [Source: WormBase] BY ORTHOLOGY TO:F56C11.1
15.301 -16.09 0.0074424 1300 7 2 6 [+] picture button
CBG03225 ENSCBRT00000006833 mitochondrial import receptor subunit tom40mitochondrial import receptor subunit tom40 BY ORTHOLOGY TO:AAEL007001-RA
15.3347 -17.26 0.00850599 1300 1 1 1 [+] picture button
CBG08481 ENSCBRT00000000257 F36H12.2 [Source:RefSeq_peptide;Acc:NP_500768]F36H12.2 [Source:RefSeq_peptide;Acc:NP_500768] BY ORTHOLOGY TO:F36H12.2
17.4127 -24.33 0.00881961 1300 4 1 6 [+] picture button
CBG06803 ENSCBRT00000007459 ptr-9 encodes an ortholog of Drosophila and human PTCHD3, which defines one of seven paralogous families of sterol sensing domain (SSD) proteins. PTR-9 is required for normal development in mass RNAi assays. [Source: WormBase]ptr-9 encodes an ortholog of Drosophila and human PTCHD3, which defines one of seven paralogous families of sterol sensing domain (SSD) proteins. PTR-9 is required for normal development in mass RNAi assays. [Source: WormBase] BY ORTHOLOGY TO:F54G8.5
17.3876 -20.79 0.0090657 1300 3 1 5 [+] picture button
CBG12369 ENSCBRT00000013118 kuzbaniankuzbanian BY ORTHOLOGY TO:AAEL002663-RA
15.2297 -16.64 0.00974551 1300 4 2 8 [+] picture button
CBG20416 ENSCBRT00000003593 cdk-9 encodes an ortholog of the metazoan transcription elongation factor kinase CDK-9. it is required for general expression of early embryonic genes, and thought (in conjunction with partners such as cyclin T) to form a transcription factor (P-TEFb) that which prevents transcription from stalling in vitro. [Source: WormBase]cdk-9 encodes an ortholog of the metazoan transcription elongation factor kinase CDK-9. it is required for general expression of early embryonic genes, and thought (in conjunction with partners such as cyclin T) to form a transcription factor (P-TEFb) that which prevents transcription from stalling in vitro. [Source: WormBase] BY ORTHOLOGY TO:H25P06.2b
17.2401 -13.39 0.0106525 1300 3 1 3 [+] picture button
CBG05964 ENSCBRT00000009037 Y69E1A.5 [Source:RefSeq_peptide;Acc:NP_502042]Y69E1A.5 [Source:RefSeq_peptide;Acc:NP_502042] BY ORTHOLOGY TO:Y69E1A.5
17.2302 -25.52 0.0107688 1300 3 1 3 [+] picture button
CBG13013 ENSCBRT00000012973 CsCDC42. [Source:Uniprot/SPTREMBL;Acc:O61287]CsCDC42. [Source:Uniprot/SPTREMBL;Acc:O61287] BY ORTHOLOGY TO:ENSCSAVT00000020249
17.2302 -22.73 0.0107688 1300 5 1 5 [+] picture button
CBG19978 ENSCBRT00000002476 isovaleryl Coenzyme A dehydrogenase [Source:RefSeq_peptide;Acc:NP_001029554]isovaleryl Coenzyme A dehydrogenase [Source:RefSeq_peptide;Acc:NP_001029554] BY ORTHOLOGY TO:ENSBTAT00000005782
17.117 -18.9 0.0121856 1300 9 2 7 [+] picture button
CBG07754 ENSCBRT00000010718 F59D12.1 [Source:RefSeq_peptide;Acc:NP_510580]F59D12.1 [Source:RefSeq_peptide;Acc:NP_510580] BY ORTHOLOGY TO:F59D12.1
17.09 -19.27 0.0125494 1300 3 1 3 [+] picture button
CBG07788 ENSCBRT00000010747 F02C12.4 [Source:RefSeq_peptide;Acc:NP_510227]F02C12.4 [Source:RefSeq_peptide;Acc:NP_510227] BY ORTHOLOGY TO:F02C12.4
17.0642 -22.61 0.0129081 1300 5 1 5 [+] picture button
CBG10720 ENSCBRT00000012472 COLlagen family member (col-103) [Source:RefSeq_peptide;Acc:NP_499982]COLlagen family member (col-103) [Source:RefSeq_peptide;Acc:NP_499982] BY ORTHOLOGY TO:F56B3.1
17.0564 -21.51 0.0130189 1300 3 2 3 [+] picture button
CBG23468 ENSCBRT00000011577 F23H12.7 [Source:RefSeq_peptide;Acc:NP_506098]F23H12.7 [Source:RefSeq_peptide;Acc:NP_506098] BY ORTHOLOGY TO:F23H12.7
17.0344 -22.29 0.0133346 1300 4 1 4 [+] picture button
CBG09030 ENSCBRT00000008424 MLP/CRP family (Muscle LIM Protein/Cysteine-rich Protein) family member (mlp-1) [Source:RefSeq_peptide;Acc:NP_498300]MLP/CRP family (Muscle LIM Protein/Cysteine-rich Protein) family member (mlp-1) [Source:RefSeq_peptide;Acc:NP_498300] BY ORTHOLOGY TO:T04C9.4b
16.9558 -21.84 0.0145266 1300 4 1 6 [+] picture button
CBG20412 ENSCBRT00000003613 Sperm-Specific family, class Q family member (ssq-4) [Source:RefSeq_peptide;Acc:NP_500704]Sperm-Specific family, class Q family member (ssq-4) [Source:RefSeq_peptide;Acc:NP_500704] BY ORTHOLOGY TO:T28H11.1
16.8562 -20.54 0.016189 1300 4 1 5 [+] picture button
CBG03659 ENSCBRT00000008751 Ankyrin repeat domain-containing protein 13C. [Source:Uniprot/SWISSPROT;Acc:Q8N6S4]Ankyrin repeat domain-containing protein 13C. [Source:Uniprot/SWISSPROT;Acc:Q8N6S4] BY ORTHOLOGY TO:ENSOANT00000024469
16.703 -18.77 0.0191166 1300 4 1 10 [+] picture button
CBG00143 ENSCBRT00000001516 F42F12.3 [Source:RefSeq_peptide;Acc:NP_510071]F42F12.3 [Source:RefSeq_peptide;Acc:NP_510071] BY ORTHOLOGY TO:F42F12.3
16.6848 -19.08 0.0194976 1300 2 1 4 [+] picture button
CBG23847 ENSCBRT00000006766 Serpentine Receptor, class I family member (sri-15) [Source:RefSeq_peptide;Acc:NP_493072]Serpentine Receptor, class I family member (sri-15) [Source:RefSeq_peptide;Acc:NP_493072] BY ORTHOLOGY TO:F15H9.2
16.6783 -18.57 0.0196343 1300 5 1 10 [+] picture button
CBG04455 ENSCBRT00000008948 F31D4.4 [Source:RefSeq_peptide;Acc:NP_508027]F31D4.4 [Source:RefSeq_peptide;Acc:NP_508027] BY ORTHOLOGY TO:F31D4.4
16.6428 -17.69 0.0204046 1300 2 1 2 [+] picture button
CBG18996 ENSCBRT00000014100 Metallothionein-1 (MT-1) (Metallothionein-I) (MT-I). [Source:Uniprot/SWISSPROT;Acc:P17511]Metallothionein-1 (MT-1) (Metallothionein-I) (MT-I). [Source:Uniprot/SWISSPROT;Acc:P17511] BY ORTHOLOGY TO:K11G9.6
16.5879 -14.88 0.0216519 1300 4 1 4 [+] picture button
CBG13296 ENSCBRT00000001047 C18D11.1 [Source:RefSeq_peptide;Acc:NP_499530]C18D11.1 [Source:RefSeq_peptide;Acc:NP_499530] BY ORTHOLOGY TO:C18D11.1
16.5866 -17.26 0.021682 1300 3 2 4 [+] picture button
CBG23307 ENSCBRT00000012352 F35B12.4 [Source:RefSeq_peptide;Acc:NP_505943]F35B12.4 [Source:RefSeq_peptide;Acc:NP_505943] BY ORTHOLOGY TO:F35B12.4
16.5485 -19.2 0.0225924 1300 3 1 3 [+] picture button

Page 1 of 3
1 2 3 next >>

Download table: GFF TXT
spacer
spacer