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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cel-miR-238

166 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG24900 ENSCBRT00000012465 F44D12.8 [Source:RefSeq_peptide;Acc:NP_501809]F44D12.8 [Source:RefSeq_peptide;Acc:NP_501809] BY ORTHOLOGY TO:F44D12.8
17.3091 -16.16 0.000655185 1300 6 1 7 [+] picture button
CBG19027 ENSCBRT00000014072 T15B7.4 [Source:RefSeq_peptide;Acc:NP_504736]T15B7.4 [Source:RefSeq_peptide;Acc:NP_504736] BY ORTHOLOGY TO:T15B7.4
15.8393 -19.7 0.00095885 1300 4 2 6 [+] picture button
CBG23762 ENSCBRT00000009337 C33E10.6 [Source:RefSeq_peptide;Acc:NP_510803]C33E10.6 [Source:RefSeq_peptide;Acc:NP_510803] BY ORTHOLOGY TO:C33E10.6
15.5983 -13.44 0.00107331 1300 4 1 4 [+] picture button
CBG17336 ENSCBRT00000001134 hum-4 encodes a class XII myosin, an unconventional myosin. [Source: WormBase]hum-4 encodes a class XII myosin, an unconventional myosin. [Source: WormBase] BY ORTHOLOGY TO:F46C3.3
15.8623 -13.82 0.00138609 1300 4 1 4 [+] picture button
CBG05540 ENSCBRT00000005342 hif-1 encodes an ortholog of the mammalian hypoxia-induced factor HIF-1, and is required for survival in hypoxic environments (1% oxygen) that have no effect on wild-type C. elegans. [Source: WormBase]hif-1 encodes an ortholog of the mammalian hypoxia-induced factor HIF-1, and is required for survival in hypoxic environments (1% oxygen) that have no effect on wild-type C. elegans. [Source: WormBase] BY ORTHOLOGY TO:F38A6.3a
15.8621 -17.32 0.00139513 1300 1 2 2 [+] picture button
CBG24565 ENSCBRT00000014630 PAB-dependent poly(A)-specific ribonuclease subunit 2 (EC 3.1.13.4) (hPan2) (Inactive ubiquitin carboxyl-terminal hydrolase 52). [Source:Uniprot/SWISSPROT;Acc:Q504Q3]PAB-dependent poly(A)-specific ribonuclease subunit 2 (EC 3.1.13.4) (hPan2) (Inactive ubiquitin carboxyl-terminal hydrolase 52). [Source:Uniprot/SWISSPROT;Acc:Q504Q3] BY ORTHOLOGY TO:ENST00000379495
15.6402 -12.32 0.00178358 1300 5 1 4 [+] picture button
CBG04182 ENSCBRT00000007618 COLlagen family member (col-49) [Source:RefSeq_peptide;Acc:NP_491106]COLlagen family member (col-49) [Source:RefSeq_peptide;Acc:NP_491106] BY ORTHOLOGY TO:K09H9.3
15.9244 -19.5 0.00180878 1300 6 1 5 [+] picture button
CBG03643 ENSCBRT00000006543 R07E5.15 [Source:RefSeq_peptide;Acc:NP_497889]R07E5.15 [Source:RefSeq_peptide;Acc:NP_497889] BY ORTHOLOGY TO:R07E5.15
15.6425 -16.67 0.00193188 1300 7 1 7 [+] picture button
CBG09587 ENSCBRT00000005904 K07C5.2 [Source:RefSeq_peptide;Acc:NP_505658]K07C5.2 [Source:RefSeq_peptide;Acc:NP_505658] BY ORTHOLOGY TO:K07C5.2
15.7529 -24.25 0.00210467 1300 3 1 2 [+] picture button
CBG15324 ENSCBRT00000009591 Y48A6B.1 [Source:RefSeq_peptide;Acc:NP_499413]Y48A6B.1 [Source:RefSeq_peptide;Acc:NP_499413] BY ORTHOLOGY TO:Y48A6B.1
15.9308 -18.98 0.00211587 1300 3 2 3 [+] picture button
CBG05220 ENSCBRT00000003921 K03A11.5 [Source:RefSeq_peptide;Acc:NP_510167]K03A11.5 [Source:RefSeq_peptide;Acc:NP_510167] BY ORTHOLOGY TO:K03A11.5
15.9046 -26.81 0.0023045 1300 6 2 5 [+] picture button
CBG01076 ENSCBRT00000005239 C39F7.5 [Source:RefSeq_peptide;Acc:NP_503398]C39F7.5 [Source:RefSeq_peptide;Acc:NP_503398] BY ORTHOLOGY TO:C39F7.5
15.5553 -22.43 0.00232313 1300 3 1 3 [+] picture button
CBG05490 ENSCBRT00000004847 nlp-16 encodes a predicted neuropeptide that does not belong to a multigene family in C. elegans and is not clearly related to well-characterized neuropeptides. the peptide encoded by nlp-16 has been isolated from Ascaris suum. [Source: WormBase]nlp-16 encodes a predicted neuropeptide that does not belong to a multigene family in C. elegans and is not clearly related to well-characterized neuropeptides. the peptide encoded by nlp-16 has been isolated from Ascaris suum. [Source: WormBase] BY ORTHOLOGY TO:T13A10.5a
16.0694 -12.16 0.00244096 1300 9 2 12 [+] picture button
CBG01710 ENSCBRT00000005585 F19C7.2 [Source:RefSeq_peptide;Acc:NP_500595]F19C7.2 [Source:RefSeq_peptide;Acc:NP_500595] BY ORTHOLOGY TO:F19C7.2
15.4826 -12.66 0.00267139 1300 1 1 2 [+] picture button
CBG04313 ENSCBRT00000007685 KIAA1632 (KIAA1632), mRNA [Source:RefSeq_dna;Acc:NM_020964]KIAA1632 (KIAA1632), mRNA [Source:RefSeq_dna;Acc:NM_020964] BY ORTHOLOGY TO:ENSMMUT00000005037
15.5627 -17.47 0.00274625 1300 1 1 1 [+] picture button
ENSCBRT00000011794 C31E10.1 [Source:RefSeq_peptide;Acc:NP_510330]C31E10.1 [Source:RefSeq_peptide;Acc:NP_510330] BY ORTHOLOGY TO:C31E10.1
15.3546 -19.32 0.00345567 1300 3 1 4 [+] picture button
CBG14719 ENSCBRT00000006786 T22B7.7 [Source:RefSeq_peptide;Acc:NP_508954]T22B7.7 [Source:RefSeq_peptide;Acc:NP_508954] BY ORTHOLOGY TO:T22B7.7
15.0689 -16.34 0.00379331 1300 4 1 4 [+] picture button
CBG02443 ENSCBRT00000006539 C17C3.1a [Source:RefSeq_peptide;Acc:NP_495075]C17C3.1a [Source:RefSeq_peptide;Acc:NP_495075] BY ORTHOLOGY TO:C17C3.1a
15.9232 -10.54 0.00393629 1300 3 1 3 [+] picture button
CBG11427 ENSCBRT00000013975 Serpentine Receptor, class X family member (srx-10) [Source:RefSeq_peptide;Acc:NP_506459]Serpentine Receptor, class X family member (srx-10) [Source:RefSeq_peptide;Acc:NP_506459] BY ORTHOLOGY TO:R10D12.4
15.3315 -28.35 0.00400626 1300 3 1 3 [+] picture button
CBG12118 ENSCBRT00000013304 Serpentine Receptor, class G (gamma) family member (srg-62) [Source:RefSeq_peptide;Acc:NP_503745]Serpentine Receptor, class G (gamma) family member (srg-62) [Source:RefSeq_peptide;Acc:NP_503745] BY ORTHOLOGY TO:C24B9.12
14.9371 -16.16 0.00405511 1300 6 1 4 [+] picture button
CBG13928 ENSCBRT00000013637 Y77E11A.2 [Source:RefSeq_peptide;Acc:NP_500084]Y77E11A.2 [Source:RefSeq_peptide;Acc:NP_500084] BY ORTHOLOGY TO:Y77E11A.2
15.6143 -15.77 0.00410286 1300 3 1 2 [+] picture button
CBG09836 ENSCBRT00000008010 Y71H2AL.1 [Source:RefSeq_peptide;Acc:NP_497601]Y71H2AL.1 [Source:RefSeq_peptide;Acc:NP_497601] BY ORTHOLOGY TO:Y71H2AL.1
16.0997 -10.86 0.00412204 1300 7 1 6 [+] picture button
CBG09258 ENSCBRT00000006276 Y38A10A.2 [Source:RefSeq_peptide;Acc:NP_504570]Y38A10A.2 [Source:RefSeq_peptide;Acc:NP_504570] BY ORTHOLOGY TO:Y38A10A.2
15.3082 -19.78 0.00416569 1300 5 2 5 [+] picture button
CBG11494 ENSCBRT00000013831 F35E12.8 [Source:RefSeq_peptide;Acc:NP_506405]F35E12.8 [Source:RefSeq_peptide;Acc:NP_506405] BY ORTHOLOGY TO:F35E12.8
15.3864 -13.97 0.00436589 1300 3 1 2 [+] picture button
CBG08630 ENSCBRT00000002966 Serpentine Receptor, class SX family member (srsx-5) [Source:RefSeq_peptide;Acc:NP_505038]Serpentine Receptor, class SX family member (srsx-5) [Source:RefSeq_peptide;Acc:NP_505038] BY ORTHOLOGY TO:Y97E10B.2
15.3406 -20.14 0.00453992 1300 6 2 6 [+] picture button
CBG16224 ENSCBRT00000012623 T01H10.8 [Source:RefSeq_peptide;Acc:NP_510030]T01H10.8 [Source:RefSeq_peptide;Acc:NP_510030] BY ORTHOLOGY TO:T01H10.8
15.8477 -15.29 0.00457654 1300 5 1 4 [+] picture button
CBG22960 ENSCBRT00000008780 F49E11.7 [Source:RefSeq_peptide;Acc:NP_502500]F49E11.7 [Source:RefSeq_peptide;Acc:NP_502500] BY ORTHOLOGY TO:F49E11.7
16.5122 -13.43 0.00461987 1300 3 2 4 [+] picture button
CBG21313 ENSCBRT00000000755 MGC10433 protein. [Source:Uniprot/SPTREMBL;Acc:Q9BU66]MGC10433 protein. [Source:Uniprot/SPTREMBL;Acc:Q9BU66] BY ORTHOLOGY TO:ENST00000262633
15.2557 -12.39 0.00504683 1300 2 1 3 [+] picture button
CBG03790 ENSCBRT00000008644 F10G8.8 [Source:RefSeq_peptide;Acc:NP_492655]F10G8.8 [Source:RefSeq_peptide;Acc:NP_492655] BY ORTHOLOGY TO:F10G8.8
15.3173 -13.25 0.00520734 1300 5 2 7 [+] picture button
CBG15882 ENSCBRT00000011066 F36G9.12 [Source:RefSeq_peptide;Acc:NP_507007]F36G9.12 [Source:RefSeq_peptide;Acc:NP_507007] BY ORTHOLOGY TO:F36G9.12
15.2964 -10.66 0.00526796 1300 4 1 5 [+] picture button
ENSCBRT00000008554 str-3 encodes a seven transmembrane chemosensory receptor. STR-3 is expressed in the ASI chemosensory neurons. STR-3 expression in ASI is repressed in the presence of dauer pheromone at concentrations lower than that which induces dauer formation. [Source: WormBase]str-3 encodes a seven transmembrane chemosensory receptor. STR-3 is expressed in the ASI chemosensory neurons. STR-3 expression in ASI is repressed in the presence of dauer pheromone at concentrations lower than that which induces dauer formation. [Source: WormBase] BY ORTHOLOGY TO:M7.13
15.1025 -16.96 0.00569797 1300 2 1 2 [+] picture button
CBG04461 ENSCBRT00000008956 F36G9.3 [Source:RefSeq_peptide;Acc:NP_506999]F36G9.3 [Source:RefSeq_peptide;Acc:NP_506999] BY ORTHOLOGY TO:F36G9.3
15.1476 -13.56 0.00577445 1300 6 1 9 [+] picture button
CBG13407 ENSCBRT00000009431 K02F6.4 [Source:RefSeq_peptide;Acc:NP_494293]K02F6.4 [Source:RefSeq_peptide;Acc:NP_494293] BY ORTHOLOGY TO:K02F6.4
15.1217 -19.4 0.00577445 1300 6 1 5 [+] picture button
CBG08205 ENSCBRT00000003676 K04G2.9 [Source:RefSeq_peptide;Acc:NP_492219]K04G2.9 [Source:RefSeq_peptide;Acc:NP_492219] BY ORTHOLOGY TO:K04G2.9
15.1374 -18.87 0.00577445 1300 1 1 1 [+] picture button
ENSCBRT00000005216 Y54E5A.2 [Source:RefSeq_peptide;Acc:NP_493550]Y54E5A.2 [Source:RefSeq_peptide;Acc:NP_493550] BY ORTHOLOGY TO:Y54E5A.2
15.0757 -17.61 0.00690196 1300 2 1 3 [+] picture button
CBG10937 ENSCBRT00000001247 conserved hypothetical proteinconserved hypothetical protein BY ORTHOLOGY TO:AAEL003445-RA
17.3124 -24.99 0.00770896 1300 3 1 3 [+] picture button
CBG08072 ENSCBRT00000003500 F55A4.2 [Source:RefSeq_peptide;Acc:NP_508193]F55A4.2 [Source:RefSeq_peptide;Acc:NP_508193] BY ORTHOLOGY TO:F55A4.2
16.2169 -15.92 0.00813367 1300 2 1 2 [+] picture button
CBG19233 ENSCBRT00000013438 F07C3.2 [Source:RefSeq_peptide;Acc:NP_505390]F07C3.2 [Source:RefSeq_peptide;Acc:NP_505390] BY ORTHOLOGY TO:F07C3.2
14.9636 -14.14 0.00822715 1300 2 2 3 [+] picture button
CBG00604 ENSCBRT00000003335 F56C9.8 [Source:RefSeq_peptide;Acc:NP_498613]F56C9.8 [Source:RefSeq_peptide;Acc:NP_498613] BY ORTHOLOGY TO:F56C9.8
14.9467 -10.04 0.00823002 1300 4 1 4 [+] picture button
CBG04819 ENSCBRT00000010021 Nuclear Hormone Receptor family member (nhr-233) [Source:RefSeq_peptide;Acc:NP_507191]Nuclear Hormone Receptor family member (nhr-233) [Source:RefSeq_peptide;Acc:NP_507191] BY ORTHOLOGY TO:Y32B12B.6
17.0883 -17.62 0.00976612 1300 6 1 5 [+] picture button
CBG04368 ENSCBRT00000007707 F22G12.6 [Source:RefSeq_peptide;Acc:NP_493306]F22G12.6 [Source:RefSeq_peptide;Acc:NP_493306] BY ORTHOLOGY TO:F22G12.6
14.9433 -8.75 0.0099102 1300 3 2 3 [+] picture button
CBG00667 ENSCBRT00000003216 K01C8.2 [Source:RefSeq_peptide;Acc:NP_495742]K01C8.2 [Source:RefSeq_peptide;Acc:NP_495742] BY ORTHOLOGY TO:K01C8.2
15.0039 -17.38 0.0101308 1300 3 1 3 [+] picture button
CBG01698 ENSCBRT00000005576 ZK180.1 [Source:RefSeq_peptide;Acc:NP_500579]ZK180.1 [Source:RefSeq_peptide;Acc:NP_500579] BY ORTHOLOGY TO:ZK180.1
16.981 -22.77 0.0109351 1300 3 1 6 [+] picture button
CBG18891 ENSCBRT00000014181 W06H8.6 [Source:RefSeq_peptide;Acc:NP_504596]W06H8.6 [Source:RefSeq_peptide;Acc:NP_504596] BY ORTHOLOGY TO:W06H8.6
14.9534 -18.83 0.0110108 1300 3 1 5 [+] picture button
CBG20429 ENSCBRT00000003555 F36D1.1 [Source:RefSeq_peptide;Acc:NP_492896]F36D1.1 [Source:RefSeq_peptide;Acc:NP_492896] BY ORTHOLOGY TO:F36D1.1
16.9703 -20.73 0.0110588 1300 1 1 1 [+] picture button
CBG11581 ENSCBRT00000011388 C25D7.5 [Source:RefSeq_peptide;Acc:NP_506705]C25D7.5 [Source:RefSeq_peptide;Acc:NP_506705] BY ORTHOLOGY TO:C25D7.5
14.9957 -17.78 0.0111823 1300 1 1 1 [+] picture button
CBG12247 ENSCBRT00000013311 Uncharacterized transporter C02C2.4. [Source:Uniprot/SWISSPROT;Acc:P34272]Uncharacterized transporter C02C2.4. [Source:Uniprot/SWISSPROT;Acc:P34272] BY ORTHOLOGY TO:C02C2.4
16.8791 -17.22 0.0121731 1300 8 2 10 [+] picture button
CBG14718 ENSCBRT00000006787 T22B7.3 [Source:RefSeq_peptide;Acc:NP_508952]T22B7.3 [Source:RefSeq_peptide;Acc:NP_508952] BY ORTHOLOGY TO:T22B7.3
16.8206 -23.8 0.0129463 1300 4 1 4 [+] picture button
CBG14677 ENSCBRT00000006857 F35C8.2 [Source:RefSeq_peptide;Acc:NP_508915]F35C8.2 [Source:RefSeq_peptide;Acc:NP_508915] BY ORTHOLOGY TO:F35C8.2
16.797 -27.58 0.0132707 1300 4 1 4 [+] picture button
CBG18322 ENSCBRT00000001627 Probable phospholipid-transporting ATPase VA (EC 3.6.3.1) (ATPVA) (Aminophospholipid translocase VA). [Source:Uniprot/SWISSPROT;Acc:O60312]Probable phospholipid-transporting ATPase VA (EC 3.6.3.1) (ATPVA) (Aminophospholipid translocase VA). [Source:Uniprot/SWISSPROT;Acc:O60312] BY ORTHOLOGY TO:SINFRUT00000151737
16.7446 -26 0.0140222 1300 3 1 3 [+] picture button

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