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Target Listing


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Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cel-miR-237

198 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG02828 ENSCBRT00000006246 CLASS C ACETYLCHOLINESTERASE (EC 3.1.1.7). [Source:SPTREMBL;Acc:Q9NDG9]
15.1348 -17.77 0.00000986267 1300 3 2 3 [+] picture button
CBG03793 ENSCBRT00000008646 B0379.1 [Source:RefSeq_peptide;Acc:NP_492659]B0379.1 [Source:RefSeq_peptide;Acc:NP_492659] BY ORTHOLOGY TO:B0379.1
14.9921 -21.78 0.0000721359 1300 5 1 4 [+] picture button
CBG05116 ENSCBRT00000010296 ptr-21 encodes a nematode-specific member of the sterol sensing domain (SSD) proteins, distantly paralogous to Drosophila PATCHED (PTC) and human PTCH (OMIM:601309, mutated in basal cell nevus syndrome). PTR-21 is weakly required for normal molting from L4 to adult stages. PTR-21 is also required for normal growth to full size and locomotion. [Source: WormBase]ptr-21 encodes a nematode-specific member of the sterol sensing domain (SSD) proteins, distantly paralogous to Drosophila PATCHED (PTC) and human PTCH (OMIM:601309, mutated in basal cell nevus syndrome). PTR-21 is weakly required for normal molting from L4 to adult stages. PTR-21 is also required for normal growth to full size and locomotion. [Source: WormBase] BY ORTHOLOGY TO:Y65B4BR.3
16.1057 -15.86 0.000619021 1300 7 1 10 [+] picture button
CBG17911 ENSCBRT00000000458 F48G7.4 [Source:RefSeq_peptide;Acc:NP_503266]F48G7.4 [Source:RefSeq_peptide;Acc:NP_503266] BY ORTHOLOGY TO:F48G7.4
15.4506 -20.2 0.000738657 1300 5 1 5 [+] picture button
CBG13344 ENSCBRT00000009488 T05H10.1 [Source:RefSeq_peptide;Acc:NP_495686]T05H10.1 [Source:RefSeq_peptide;Acc:NP_495686] BY ORTHOLOGY TO:T05H10.1
17.2261 -22.68 0.000800892 1300 2 1 3 [+] picture button
CBG18077 ENSCBRT00000003173 R07E5.4 [Source:RefSeq_peptide;Acc:NP_497886]R07E5.4 [Source:RefSeq_peptide;Acc:NP_497886] BY ORTHOLOGY TO:R07E5.4
15.4389 -18.36 0.000855349 1300 3 2 6 [+] picture button
CBG02399 ENSCBRT00000006608 F07F6.5 [Source:RefSeq_peptide;Acc:NP_495031]F07F6.5 [Source:RefSeq_peptide;Acc:NP_495031] BY ORTHOLOGY TO:F07F6.5
15.6293 -18.15 0.000898667 1300 4 1 4 [+] picture button
CBG13243 ENSCBRT00000001089 The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). [Source: WormBase]The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). [Source: WormBase] BY ORTHOLOGY TO:Y41C4A.5
15.3315 -22.26 0.000955345 1300 1 1 1 [+] picture button
CBG14244 ENSCBRT00000002687 C18B2.6 [Source:RefSeq_peptide;Acc:NP_508622]C18B2.6 [Source:RefSeq_peptide;Acc:NP_508622] BY ORTHOLOGY TO:C18B2.6
15.4161 -19.78 0.000956483 1300 5 2 10 [+] picture button
CBG04636 ENSCBRT00000010530 F47B8.6 [Source:RefSeq_peptide;Acc:NP_506552]F47B8.6 [Source:RefSeq_peptide;Acc:NP_506552] BY ORTHOLOGY TO:F47B8.6
15.2366 -21.01 0.00117155 1300 7 1 9 [+] picture button
CBG23263 ENSCBRT00000012277 D2023.3 [Source:RefSeq_peptide;Acc:NP_505976]D2023.3 [Source:RefSeq_peptide;Acc:NP_505976] BY ORTHOLOGY TO:D2023.3
15.656 -16.68 0.00129246 1300 2 1 2 [+] picture button
CBG05935 ENSCBRT00000009010 C08G9.1 [Source:RefSeq_peptide;Acc:NP_741444]C08G9.1 [Source:RefSeq_peptide;Acc:NP_741444] BY ORTHOLOGY TO:C08G9.1
15.2447 -18.63 0.00129444 1300 4 2 6 [+] picture button
CBG00498 ENSCBRT00000001926 The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77) [Source: WormBase]The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77) [Source: WormBase] BY ORTHOLOGY TO:Y111B2A.22
18.0877 -26.76 0.00148429 1300 3 1 4 [+] picture button
CBG19452 ENSCBRT00000013079 Y67A10A.1 [Source:RefSeq_peptide;Acc:NP_502742]Y67A10A.1 [Source:RefSeq_peptide;Acc:NP_502742] BY ORTHOLOGY TO:Y67A10A.1
17.9996 -25.34 0.00163688 1300 4 1 6 [+] picture button
CBG04030 ENSCBRT00000009917 air-2 encodes an aurora/Ip11-related serine/threonine protein kinase that affects embryonic viability and chromosome segregation during meiosis and mitosis and is required for cytokinesis. AIR-2 has two functions during mitosis, one in chromosome segregation, and a second, independent function in cytokinesis through ZEN-4. AIR-2 and ZEN-4 may act in parallel to a second pathway that includes CYK-1. AIR-2 phosphorylates two adjacent, evolutionarily conserved C-terminal serines of the inner centromere protein ICP-1. AIR-2 forms a robust complex with CSC-1, BIR-1, and ICP-1. air-2 is expressed highly in embryos, in the mature oocytes, spermatocytes, and extruded polar bodies. [Source: WormBase]air-2 encodes an aurora/Ip11-related serine/threonine protein kinase that affects embryonic viability and chromosome segregation during meiosis and mitosis and is required for cytokinesis. AIR-2 has two functions during mitosis, one in chromosome segregation, and a second, independent function in cytokinesis through ZEN-4. AIR-2 and ZEN-4 may act in parallel to a second pathway that includes CYK-1. AIR-2 phosphorylates two adjacent, evolutionarily conserved C-terminal serines of the inner centromere protein ICP-1. AIR-2 forms a robust complex with CSC-1, BIR-1, and ICP-1. air-2 is expressed highly in embryos, in the mature oocytes, spermatocytes, and extruded polar bodies. [Source: WormBase] BY ORTHOLOGY TO:B0207.4
14.7563 -16.94 0.00165665 1300 2 1 3 [+] picture button
CBG08867 ENSCBRT00000000530 Serpentine Receptor, class H family member (srh-22) [Source:RefSeq_peptide;Acc:NP_504323]Serpentine Receptor, class H family member (srh-22) [Source:RefSeq_peptide;Acc:NP_504323] BY ORTHOLOGY TO:C02E7.4
15.0225 -21.78 0.00175903 1300 3 1 3 [+] picture button
CBG20190 ENSCBRT00000000803 unc-103 encodes an ERG-like K+ channel homolog, orthologous to human KCNH6 (OMIM:608168). UNC-103 regulates muscle activation in motility, egg-laying and male spicule protraction. UNC-103 is expressed highly in many neurons. gain-of-function alleles can be uncoordinated, while loss-of-function alleles have a more subtle defect in copulatory spicule protraction. [Source: WormBase]unc-103 encodes an ERG-like K+ channel homolog, orthologous to human KCNH6 (OMIM:608168). UNC-103 regulates muscle activation in motility, egg-laying and male spicule protraction. UNC-103 is expressed highly in many neurons. gain-of-function alleles can be uncoordinated, while loss-of-function alleles have a more subtle defect in copulatory spicule protraction. [Source: WormBase] BY ORTHOLOGY TO:C30D11.1
17.3148 -21.47 0.0018686 1300 4 2 8 [+] picture button
CBG16488 ENSCBRT00000014629 Pnpo protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q6PG36]Pnpo protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q6PG36] BY ORTHOLOGY TO:ENSDART00000022724
14.6908 -20.41 0.00190224 1300 4 1 3 [+] picture button
CBG18375 ENSCBRT00000001576 F43D9.1 [Source:RefSeq_peptide;Acc:NP_499313]F43D9.1 [Source:RefSeq_peptide;Acc:NP_499313] BY ORTHOLOGY TO:F43D9.1
15.0955 -16.82 0.00199153 1300 4 2 6 [+] picture button
CBG09927 ENSCBRT00000008097 The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). [Source: WormBase]The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). [Source: WormBase] BY ORTHOLOGY TO:C05B5.3
15.2344 -21.46 0.0020749 1300 3 1 3 [+] picture button
CBG19296 ENSCBRT00000013491 C50F4.9 [Source:RefSeq_peptide;Acc:NP_505454]C50F4.9 [Source:RefSeq_peptide;Acc:NP_505454] BY ORTHOLOGY TO:C50F4.9
15.2313 -17.1 0.00207866 1300 4 1 4 [+] picture button
CBG19300 ENSCBRT00000013498 mTERF domain-containing protein 1, mitochondrial precursor. [Source:Uniprot/SWISSPROT;Acc:Q96E29]mTERF domain-containing protein 1, mitochondrial precursor. [Source:Uniprot/SWISSPROT;Acc:Q96E29] BY ORTHOLOGY TO:ENSMODT00000008805
14.7941 -27.08 0.00230512 1300 5 1 5 [+] picture button
CBG24565 ENSCBRT00000014630 PAB-dependent poly(A)-specific ribonuclease subunit 2 (EC 3.1.13.4) (hPan2) (Inactive ubiquitin carboxyl-terminal hydrolase 52). [Source:Uniprot/SWISSPROT;Acc:Q504Q3]PAB-dependent poly(A)-specific ribonuclease subunit 2 (EC 3.1.13.4) (hPan2) (Inactive ubiquitin carboxyl-terminal hydrolase 52). [Source:Uniprot/SWISSPROT;Acc:Q504Q3] BY ORTHOLOGY TO:ENST00000379495
14.5716 -20.41 0.00244365 1300 5 1 4 [+] picture button
CBG22788 ENSCBRT00000004255 grd-3 encodes a hedgehog-like protein, with an N-terminal signal sequence and a C-terminal Ground domain. GRD-3 is expressed in adult anterior and posterior seam cells, overlapping GRD-5 expression. GRD-3 is also strongly expressed upon infection with the gram-negative bacterium Serratia marcescens, indicating that GRD-3 may be part of C. elegans' innate immunity response. the Ground domain is predicted to form a cysteine-crosslinked protein acting as an intercellular signal, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins. GRD-3 is weakly required for normal molting. GRD-3 is also required for normal growth to full size and locomotion. all of these requirements may reflect common defects in cholesterol-dependent hedgehog-like signalling or in vesicle trafficking. [Source: WormBase]grd-3 encodes a hedgehog-like protein, with an N-terminal signal sequence and a C-terminal Ground domain. GRD-3 is expressed in adult anterior and posterior seam cells, overlapping GRD-5 expression. GRD-3 is also strongly expressed upon infection with the gram-negative bacterium Serratia marcescens, indicating that GRD-3 may be part of C. elegans' innate immunity response. the Ground domain is predicted to form a cysteine-crosslinked protein acting as an intercellular signal, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins. GRD-3 is weakly required for normal molting. GRD-3 is also required for normal growth to full size and locomotion. all of these requirements may reflect common defects in cholesterol-dependent hedgehog-like signalling or in vesicle trafficking. [Source: WormBase] BY ORTHOLOGY TO:W05E7.1
14.6487 -17.1 0.00258037 1300 6 1 5 [+] picture button
CBG22587 ENSCBRT00000009857 nhr-34 encodes a member of the nuclear receptor superfamily. phylogenetic analyses indicate that NHR-34 is a divergent nuclear receptor that likely arose from the expansion and diversification of the HNF4 (NR2A) subgroup in C. elegans. the role of NHR-34 in C. elegans development and/or behavior, and the NHR-34 expression pattern, are not yet known. [Source: WormBase]nhr-34 encodes a member of the nuclear receptor superfamily. phylogenetic analyses indicate that NHR-34 is a divergent nuclear receptor that likely arose from the expansion and diversification of the HNF4 (NR2A) subgroup in C. elegans. the role of NHR-34 in C. elegans development and/or behavior, and the NHR-34 expression pattern, are not yet known. [Source: WormBase] BY ORTHOLOGY TO:F58G6.5c
14.8479 -17.12 0.00283154 1300 5 2 7 [+] picture button
CBG02667 ENSCBRT00000007492 Putative cuticle collagen 75. [Source:Uniprot/SWISSPROT;Acc:Q09578]Putative cuticle collagen 75. [Source:Uniprot/SWISSPROT;Acc:Q09578] BY ORTHOLOGY TO:K03H9.2
14.8463 -18.63 0.00304852 1300 1 2 1 [+] picture button
CBG15179 ENSCBRT00000010368 K02F3.6 [Source:RefSeq_peptide;Acc:NP_497268]K02F3.6 [Source:RefSeq_peptide;Acc:NP_497268] BY ORTHOLOGY TO:K02F3.6
14.2993 -16.82 0.00304852 1300 3 1 2 [+] picture button
CBG03930 ENSCBRT00000010000 Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) (PHS) (4-alpha- hydroxy-tetrahydropterin dehydratase) (Phenylalanine hydroxylase- stimulating protein) (Pterin carbinolamine dehydratase) (PCD) (Dimerization cofactor of hepatocyte nuclear factor 1-al [Source:Uniprot/SWISSPROT;Acc:P61457]Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) (PHS) (4-alpha- hydroxy-tetrahydropterin dehydratase) (Phenylalanine hydroxylase- stimulating protein) (Pterin carbinolamine dehydratase) (PCD) (Dimerization cofactor of hepatocyte nuclear factor 1-al [Source:Uniprot/SWISSPROT;Acc:P61457] BY ORTHOLOGY TO:ENSORLT00000017583
15.2344 -23.83 0.0030954 1300 8 1 5 [+] picture button
CBG01609 ENSCBRT00000005504 F56A11.4 [Source:RefSeq_peptide;Acc:NP_499946]F56A11.4 [Source:RefSeq_peptide;Acc:NP_499946] BY ORTHOLOGY TO:F56A11.4
14.7384 -16.69 0.00337388 1300 3 1 3 [+] picture button
CBG04624 ENSCBRT00000010514 C15H11.2 [Source:RefSeq_peptide;Acc:NP_506566]C15H11.2 [Source:RefSeq_peptide;Acc:NP_506566] BY ORTHOLOGY TO:C15H11.2
14.3719 -19.45 0.00370003 1300 6 1 4 [+] picture button
CBG01803 ENSCBRT00000005550 similar to CG1218-PA (LOC646058), mRNA [Source:RefSeq_dna;Acc:XR_019292]similar to CG1218-PA (LOC646058), mRNA [Source:RefSeq_dna;Acc:XR_019292] BY ORTHOLOGY TO:ENSGACT00000021228
14.7592 -17.9 0.00394006 1300 4 1 4 [+] picture button
CBG03649 ENSCBRT00000006541 nlp-10 encodes four predicted neuropeptide-like proteins. nlp-10 is part of a GGxY neuropeptide family that has members in several other nematode species. nlp-10 is expressed in a variety of neurons, including ASK, ADL, CAN, two lateral neurons, two anterior pharyngeal neurons, one tail neuron, and one male tail neuron. as loss of nlp-10 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of nlp-10-encoded peptides in development and/or behavior is not yet known. [Source: WormBase]nlp-10 encodes four predicted neuropeptide-like proteins. nlp-10 is part of a GGxY neuropeptide family that has members in several other nematode species. nlp-10 is expressed in a variety of neurons, including ASK, ADL, CAN, two lateral neurons, two anterior pharyngeal neurons, one tail neuron, and one male tail neuron. as loss of nlp-10 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of nlp-10-encoded peptides in development and/or behavior is not yet known. [Source: WormBase] BY ORTHOLOGY TO:F37A8.4
17.196 -20.9 0.00399256 1300 1 1 3 [+] picture button
CBG21116 ENSCBRT00000000847 Y42G9A.2 [Source:RefSeq_peptide;Acc:NP_498331]Y42G9A.2 [Source:RefSeq_peptide;Acc:NP_498331] BY ORTHOLOGY TO:Y42G9A.2
14.6272 -22.34 0.00406046 1300 3 1 2 [+] picture button
CBG11481 ENSCBRT00000013844 TWiK family of potassium channels family member (twk-32) [Source:RefSeq_peptide;Acc:NP_506416]TWiK family of potassium channels family member (twk-32) [Source:RefSeq_peptide;Acc:NP_506416] BY ORTHOLOGY TO:F53C11.6
14.7048 -15.26 0.0041571 1300 3 1 2 [+] picture button
CBG00843 ENSCBRT00000004041 srd-1 encodes a seven transmembrane chemosensory receptor. SRD-1 is expressed in the ASI chemosensory neurons. SRD-1 expression in ASI is repressed in the presence of dauer pheromone at concentrations lower than that which induces dauer formation. [Source: WormBase]srd-1 encodes a seven transmembrane chemosensory receptor. SRD-1 is expressed in the ASI chemosensory neurons. SRD-1 expression in ASI is repressed in the presence of dauer pheromone at concentrations lower than that which induces dauer formation. [Source: WormBase] BY ORTHOLOGY TO:F33H1.5
14.975 -19.53 0.00433944 1300 2 1 2 [+] picture button
CBG20869 ENSCBRT00000000674 F59A6.4 [Source:RefSeq_peptide;Acc:NP_494922]F59A6.4 [Source:RefSeq_peptide;Acc:NP_494922] BY ORTHOLOGY TO:F59A6.4
14.2808 -15.9 0.00446081 1300 3 1 3 [+] picture button
CBG24013 ENSCBRT00000009538 F36D1.8 [Source:RefSeq_peptide;Acc:NP_492891]F36D1.8 [Source:RefSeq_peptide;Acc:NP_492891] BY ORTHOLOGY TO:F36D1.8
14.7006 -20.3 0.00461249 1300 6 1 8 [+] picture button
CBG07425 ENSCBRT00000011083 odr-1 encodes a putative guanylyl cyclase. odr-1 activity is required for normal responses to all AWC-sensed odorants. ODR-1 is expressed in chemosensory neurons including AWC, where it localizes to the flattened ciliated endings. [Source: WormBase]odr-1 encodes a putative guanylyl cyclase. odr-1 activity is required for normal responses to all AWC-sensed odorants. ODR-1 is expressed in chemosensory neurons including AWC, where it localizes to the flattened ciliated endings. [Source: WormBase] BY ORTHOLOGY TO:R01E6.1
14.3611 -20.23 0.00461577 1300 6 1 6 [+] picture button
ENSCBRT00000013415 COLlagen family member (col-144) [Source:RefSeq_peptide;Acc:NP_505374]COLlagen family member (col-144) [Source:RefSeq_peptide;Acc:NP_505374] BY ORTHOLOGY TO:B0222.6
14.9433 -19.88 0.00461577 1300 6 1 5 [+] picture button
CBG19609 ENSCBRT00000001788 ZK355.1 [Source:RefSeq_peptide;Acc:NP_494403]ZK355.1 [Source:RefSeq_peptide;Acc:NP_494403] BY ORTHOLOGY TO:ZK355.1
15.7082 -21.18 0.00536819 1300 3 1 4 [+] picture button
CBG05111 ENSCBRT00000010300 Y65B4BL.1 [Source:RefSeq_peptide;Acc:NP_490746]Y65B4BL.1 [Source:RefSeq_peptide;Acc:NP_490746] BY ORTHOLOGY TO:Y65B4BL.1
14.5241 -18.15 0.0057592 1300 2 1 2 [+] picture button
CBG07207 ENSCBRT00000012256 T23F4.2 [Source:RefSeq_peptide;Acc:NP_493923]T23F4.2 [Source:RefSeq_peptide;Acc:NP_493923] BY ORTHOLOGY TO:T23F4.2
16.8085 -21.25 0.00613051 1300 4 1 9 [+] picture button
CBG17230 ENSCBRT00000000479 F46F6.2 [Source:RefSeq_peptide;Acc:NP_509742]F46F6.2 [Source:RefSeq_peptide;Acc:NP_509742] BY ORTHOLOGY TO:F46F6.2
16.7685 -23.64 0.00640788 1300 3 1 3 [+] picture button
CBG22501 ENSCBRT00000006030 coiled-coil domain containing 12 [Source:MarkerSymbol;Acc:MGI:1919904]coiled-coil domain containing 12 [Source:MarkerSymbol;Acc:MGI:1919904] BY ORTHOLOGY TO:ENSMUST00000019803
15.2823 -16.01 0.00646474 1300 4 1 5 [+] picture button
CBG15734 ENSCBRT00000012049 conserved hypothetical proteinconserved hypothetical protein BY ORTHOLOGY TO:AAEL003997-RA
15.4389 -24.07 0.00646474 1300 6 1 5 [+] picture button
CBG03029 ENSCBRT00000007030 Putative cuticle collagen 79. [Source:Uniprot/SWISSPROT;Acc:Q09233]Putative cuticle collagen 79. [Source:Uniprot/SWISSPROT;Acc:Q09233] BY ORTHOLOGY TO:C09G5.3
16.6899 -27.61 0.00698912 1300 1 1 1 [+] picture button
CBG13934 ENSCBRT00000013631 Y77E11A.14 [Source:RefSeq_peptide;Acc:NP_500075]Y77E11A.14 [Source:RefSeq_peptide;Acc:NP_500075] BY ORTHOLOGY TO:Y77E11A.14
15.0635 -21.98 0.00714393 1300 4 2 5 [+] picture button
CBG00310 ENSCBRT00000000306 F26A3.7 [Source:RefSeq_peptide;Acc:NP_492136]F26A3.7 [Source:RefSeq_peptide;Acc:NP_492136] BY ORTHOLOGY TO:F26A3.7
14.3677 -15.11 0.00724913 1300 7 1 8 [+] picture button
CBG21746 ENSCBRT00000004549 C53D6.3 [Source:RefSeq_peptide;Acc:NP_501567]C53D6.3 [Source:RefSeq_peptide;Acc:NP_501567] BY ORTHOLOGY TO:C53D6.3
14.3656 -14.94 0.00728038 1300 5 1 6 [+] picture button
CBG03061 ENSCBRT00000007005 hypothetical protein LOC393598 [Source:RefSeq_peptide;Acc:NP_956919]hypothetical protein LOC393598 [Source:RefSeq_peptide;Acc:NP_956919] BY ORTHOLOGY TO:ENSDART00000005090
14.3611 -21.96 0.00734666 1300 3 1 3 [+] picture button

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