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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-90

117 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG15840 ENSCBRT00000011313 Translation initiation factor eIF-2B subunit beta (eIF-2B GDP-GTP exchange factor subunit beta) (S20I15) (S20III15). [Source:Uniprot/SWISSPROT;Acc:P49770]Translation initiation factor eIF-2B subunit beta (eIF-2B GDP-GTP exchange factor subunit beta) (S20I15) (S20III15). [Source:Uniprot/SWISSPROT;Acc:P49770] BY ORTHOLOGY TO:ENSOANT00000013802
16.7763 -19.79 1e-06 1300 7 1 2 [+] picture button
CBG03187 ENSCBRT00000006887 F46C5.1 [Source:RefSeq_peptide;Acc:NP_495879]F46C5.1 [Source:RefSeq_peptide;Acc:NP_495879] BY ORTHOLOGY TO:F46C5.1
16.7072 -20.61 0.000535069 1300 3 2 3 [+] picture button
CBG09519 ENSCBRT00000005966 C08B6.3 [Source:RefSeq_peptide;Acc:NP_505599]C08B6.3 [Source:RefSeq_peptide;Acc:NP_505599] BY ORTHOLOGY TO:C08B6.3
16.5487 -20.99 0.000898008 1300 3 1 2 [+] picture button
CBG01918 ENSCBRT00000005758 F21G4.3 [Source:RefSeq_peptide;Acc:NP_509660]F21G4.3 [Source:RefSeq_peptide;Acc:NP_509660] BY ORTHOLOGY TO:F21G4.3
16.2914 -20.9 0.00103127 1300 3 2 3 [+] picture button
CBG02139 ENSCBRT00000004204 T01B6.3a [Source:RefSeq_peptide;Acc:NP_741725]T01B6.3a [Source:RefSeq_peptide;Acc:NP_741725] BY ORTHOLOGY TO:T01B6.3a
16.5367 -15.14 0.00159298 1300 1 2 2 [+] picture button
CBG23649 ENSCBRT00000002704 Seven TM Receptor family member (str-162) [Source:RefSeq_peptide;Acc:NP_500696]Seven TM Receptor family member (str-162) [Source:RefSeq_peptide;Acc:NP_500696] BY ORTHOLOGY TO:E03H12.1
16.8518 -21.43 0.00259276 1300 3 1 2 [+] picture button
CBG05104 ENSCBRT00000010307 ptr-11 encodes a nematode-specific member of the sterol sensing domain (SSD) proteins, distantly paralogous to Drosophila PATCHED (PTC) and human PTCH (OMIM:601309, mutated in basal cell nevus syndrome). PTR-11 is required for normal growth to full size, locomotion, and vulval morphogenesis. [Source: WormBase]ptr-11 encodes a nematode-specific member of the sterol sensing domain (SSD) proteins, distantly paralogous to Drosophila PATCHED (PTC) and human PTCH (OMIM:601309, mutated in basal cell nevus syndrome). PTR-11 is required for normal growth to full size, locomotion, and vulval morphogenesis. [Source: WormBase] BY ORTHOLOGY TO:F56C11.2
15.9636 -14.86 0.00329569 1300 5 1 7 [+] picture button
CBG02622 ENSCBRT00000007521 C29F5.7 [Source:RefSeq_peptide;Acc:NP_495268]C29F5.7 [Source:RefSeq_peptide;Acc:NP_495268] BY ORTHOLOGY TO:C29F5.7
15.7877 -13.47 0.00345117 1300 4 1 4 [+] picture button
CBG17569 ENSCBRT00000002119 pgp-7 encodes an ATP-binding protein that is a member of the P-glycoprotein subclass of the ATP-binding cassette (ABC) transporter superfamily. PGP-7 is predicted to function as a transmembrane protein that couples energy to transport of various molecules across membranes, but as loss of pgp-7 activity via RNAi results in no obvious defects, the precise role of PGP-7 in C. elegans development and/or behavior is not yet known. pgp-7 promoter-gfp fusion proteins are expressed in the rays of the adult male tail. [Source: WormBase]pgp-7 encodes an ATP-binding protein that is a member of the P-glycoprotein subclass of the ATP-binding cassette (ABC) transporter superfamily. PGP-7 is predicted to function as a transmembrane protein that couples energy to transport of various molecules across membranes, but as loss of pgp-7 activity via RNAi results in no obvious defects, the precise role of PGP-7 in C. elegans development and/or behavior is not yet known. pgp-7 promoter-gfp fusion proteins are expressed in the rays of the adult male tail. [Source: WormBase] BY ORTHOLOGY TO:T21E8.2
15.6391 -12.84 0.00347695 1300 4 1 4 [+] picture button
CBG23519 ENSCBRT00000011610 C13C12.2 [Source:RefSeq_peptide;Acc:NP_506139]C13C12.2 [Source:RefSeq_peptide;Acc:NP_506139] BY ORTHOLOGY TO:C13C12.2
16.7538 -20.84 0.00395571 1300 3 1 4 [+] picture button
CBG04265 ENSCBRT00000007663 C09F9.2 [Source:RefSeq_peptide;Acc:NP_497053]C09F9.2 [Source:RefSeq_peptide;Acc:NP_497053] BY ORTHOLOGY TO:C09F9.2
15.9455 -13.77 0.00429137 1300 1 1 1 [+] picture button
CBG08566 ENSCBRT00000002848 R11D1.7 [Source:RefSeq_peptide;Acc:NP_506178]R11D1.7 [Source:RefSeq_peptide;Acc:NP_506178] BY ORTHOLOGY TO:R11D1.7
16.6141 -19.39 0.00429519 1300 3 1 2 [+] picture button
CBG09642 ENSCBRT00000005807 GTP cyclohydrolase I (EC 3.5.4.16) (GTP-CH-I). [Source:Uniprot/SWISSPROT;Acc:P30793]GTP cyclohydrolase I (EC 3.5.4.16) (GTP-CH-I). [Source:Uniprot/SWISSPROT;Acc:P30793] BY ORTHOLOGY TO:ENSORLT00000023429
15.6022 -11.9 0.00512153 1300 5 1 8 [+] picture button
CBG14195 ENSCBRT00000002613 ZK563.2 [Source:RefSeq_peptide;Acc:NP_508581]ZK563.2 [Source:RefSeq_peptide;Acc:NP_508581] BY ORTHOLOGY TO:ZK563.2
16.202 -16.96 0.00557306 1300 3 1 4 [+] picture button
CBG04191 ENSCBRT00000007614 Y54E10BL.2 [Source:RefSeq_peptide;Acc:NP_491088]Y54E10BL.2 [Source:RefSeq_peptide;Acc:NP_491088] BY ORTHOLOGY TO:Y54E10BL.2
15.5584 -16.69 0.00670933 1300 2 1 2 [+] picture button
CBG09071 ENSCBRT00000008361 F21F3.2 [Source:RefSeq_peptide;Acc:NP_491474]F21F3.2 [Source:RefSeq_peptide;Acc:NP_491474] BY ORTHOLOGY TO:F21F3.2
17.5492 -18.77 0.00777278 1300 3 1 3 [+] picture button
CBG08124 ENSCBRT00000003698 Signal transduction protein CBL-C (SH3-binding protein CBL-C) (CBL-3) (RING finger protein 57). [Source:Uniprot/SWISSPROT;Acc:Q9ULV8]Signal transduction protein CBL-C (SH3-binding protein CBL-C) (CBL-3) (RING finger protein 57). [Source:Uniprot/SWISSPROT;Acc:Q9ULV8] BY ORTHOLOGY TO:ENSPTRT00000020670
15.7103 -11.21 0.00778982 1300 2 1 2 [+] picture button
CBG21347 ENSCBRT00000000965 Nicastrin precursor. [Source:Uniprot/SWISSPROT;Acc:Q92542]Nicastrin precursor. [Source:Uniprot/SWISSPROT;Acc:Q92542] BY ORTHOLOGY TO:ENST00000294785
15.7877 -14.35 0.00806422 1300 1 2 2 [+] picture button
CBG16729 ENSCBRT00000012816 Stomatin-1. [Source:Uniprot/SWISSPROT;Acc:Q19200]Stomatin-1. [Source:Uniprot/SWISSPROT;Acc:Q19200] BY ORTHOLOGY TO:F08C6.4
15.3639 -18.68 0.00837176 1300 1 1 1 [+] picture button
CBG06029 ENSCBRT00000008579 R07H5.3b [Source:RefSeq_peptide;Acc:NP_001023329]R07H5.3b [Source:RefSeq_peptide;Acc:NP_001023329] BY ORTHOLOGY TO:R07H5.3a
17.4562 -21.86 0.00864819 1300 3 1 3 [+] picture button
CBG05661 ENSCBRT00000005426 TWiK family of potassium channels family member (twk-36) [Source:RefSeq_peptide;Acc:NP_507485]TWiK family of potassium channels family member (twk-36) [Source:RefSeq_peptide;Acc:NP_507485] BY ORTHOLOGY TO:R12G8.2
15.3096 -12.3 0.00893814 1300 3 1 4 [+] picture button
CBG18736 ENSCBRT00000014526 Y64G10A.6 [Source:RefSeq_peptide;Acc:NP_502736]Y64G10A.6 [Source:RefSeq_peptide;Acc:NP_502736] BY ORTHOLOGY TO:Y64G10A.6
15.4728 -14.84 0.00916522 1300 3 1 8 [+] picture button
CBG24402 ENSCBRT00000009778 C31A11.5 [Source:RefSeq_peptide;Acc:NP_507118]C31A11.5 [Source:RefSeq_peptide;Acc:NP_507118] BY ORTHOLOGY TO:C31A11.5
17.3874 -18.76 0.00935867 1300 6 1 5 [+] picture button
CBG21288 ENSCBRT00000000749 C32H11.5 [Source:RefSeq_peptide;Acc:NP_502467]C32H11.5 [Source:RefSeq_peptide;Acc:NP_502467] BY ORTHOLOGY TO:C32H11.5
17.3574 -19.16 0.00968587 1300 1 1 1 [+] picture button
CBG08329 ENSCBRT00000012959 Y69E1A.4 [Source:RefSeq_peptide;Acc:NP_502041]Y69E1A.4 [Source:RefSeq_peptide;Acc:NP_502041] BY ORTHOLOGY TO:Y69E1A.4
15.8282 -18.66 0.0100126 1300 6 2 6 [+] picture button
CBG14918 ENSCBRT00000004475 Nuclear Pore complex Protein family member (npp-7) [Source:RefSeq_peptide;Acc:NP_491665]Nuclear Pore complex Protein family member (npp-7) [Source:RefSeq_peptide;Acc:NP_491665] BY ORTHOLOGY TO:T19B4.2
15.3096 -13.51 0.010222 1300 3 2 3 [+] picture button
ENSCBRT00000008631 C04F12.5 [Source:RefSeq_peptide;Acc:NP_492577]C04F12.5 [Source:RefSeq_peptide;Acc:NP_492577] BY ORTHOLOGY TO:C04F12.5
15.3895 -12.84 0.010542 1300 3 1 4 [+] picture button
CBG02369 ENSCBRT00000006655 F08B1.3 [Source:RefSeq_peptide;Acc:NP_494996]F08B1.3 [Source:RefSeq_peptide;Acc:NP_494996] BY ORTHOLOGY TO:F08B1.3
17.2645 -15.71 0.0107737 1300 4 1 9 [+] picture button
CBG11247 ENSCBRT00000014518 F52E1.2 [Source:RefSeq_peptide;Acc:NP_505170]F52E1.2 [Source:RefSeq_peptide;Acc:NP_505170] BY ORTHOLOGY TO:F52E1.2
15.3108 -12.54 0.0108485 1300 4 1 3 [+] picture button
CBG09855 ENSCBRT00000007989 gei-1 encodes a protein containing a RhoGAP domain and a START (StAR-related lipid-transfer) domain and interacts with GEX-2 in yeast two-hybrid assays. [Source: WormBase]gei-1 encodes a protein containing a RhoGAP domain and a START (StAR-related lipid-transfer) domain and interacts with GEX-2 in yeast two-hybrid assays. [Source: WormBase] BY ORTHOLOGY TO:F45H7.2b
17.2287 -15.15 0.0112241 1300 3 2 3 [+] picture button
CBG19910 ENSCBRT00000002438 C39H7.4 [Source:RefSeq_peptide;Acc:NP_500834]C39H7.4 [Source:RefSeq_peptide;Acc:NP_500834] BY ORTHOLOGY TO:C39H7.4
17.1965 -23.02 0.0116455 1300 3 1 3 [+] picture button
CBG00929 ENSCBRT00000003964 Serpentine receptor class delta-2 (Protein srd-2). [Source:Uniprot/SWISSPROT;Acc:Q21767]Serpentine receptor class delta-2 (Protein srd-2). [Source:Uniprot/SWISSPROT;Acc:Q21767] BY ORTHOLOGY TO:R05H5.1
15.3235 -21.12 0.0123946 1300 5 1 6 [+] picture button
CBG12328 ENSCBRT00000013218 F55A12.5 [Source:RefSeq_peptide;Acc:NP_491573]F55A12.5 [Source:RefSeq_peptide;Acc:NP_491573] BY ORTHOLOGY TO:F55A12.5
17.1059 -17.91 0.0129151 1300 4 2 4 [+] picture button
CBG09003 ENSCBRT00000008465 B0336.3 [Source:RefSeq_peptide;Acc:NP_498234]B0336.3 [Source:RefSeq_peptide;Acc:NP_498234] BY ORTHOLOGY TO:B0336.3
17.0451 -21.03 0.0138446 1300 6 2 7 [+] picture button
CBG01894 ENSCBRT00000005743 T09B9.5 [Source:RefSeq_peptide;Acc:NP_509641]T09B9.5 [Source:RefSeq_peptide;Acc:NP_509641] BY ORTHOLOGY TO:T09B9.5
17.041 -20.92 0.0139091 1300 4 1 4 [+] picture button
CBG21451 ENSCBRT00000002361 F43C11.6 [Source:RefSeq_peptide;Acc:NP_494247]F43C11.6 [Source:RefSeq_peptide;Acc:NP_494247] BY ORTHOLOGY TO:F43C11.6
16.995 -17.84 0.0146577 1300 2 1 2 [+] picture button
CBG23739 ENSCBRT00000004466 BROther (Drosophila tx factor partner) homolog family member (bro-1) [Source:RefSeq_peptide;Acc:NP_491542]BROther (Drosophila tx factor partner) homolog family member (bro-1) [Source:RefSeq_peptide;Acc:NP_491542] BY ORTHOLOGY TO:F56A3.5
16.9802 -19.03 0.0149073 1300 5 1 9 [+] picture button
CBG03367 ENSCBRT00000007131 Y67D8C.9 [Source:RefSeq_peptide;Acc:NP_500292]Y67D8C.9 [Source:RefSeq_peptide;Acc:NP_500292] BY ORTHOLOGY TO:Y67D8C.9
16.9699 -14.75 0.0150833 1300 5 2 5 [+] picture button
CBG11849 ENSCBRT00000009333 Suppressor of presenilin protein 4. [Source:Uniprot/SWISSPROT;Acc:O17582]Suppressor of presenilin protein 4. [Source:Uniprot/SWISSPROT;Acc:O17582] BY ORTHOLOGY TO:C09H6.1a
16.9037 -18.85 0.0162643 1300 2 1 2 [+] picture button
CBG22021 ENSCBRT00000004338 Phosphoserine aminotransferase (EC 2.6.1.52) (PSAT). [Source:Uniprot/SWISSPROT;Acc:Q9Y617]Phosphoserine aminotransferase (EC 2.6.1.52) (PSAT). [Source:Uniprot/SWISSPROT;Acc:Q9Y617] BY ORTHOLOGY TO:ENST00000376588
16.9037 -20.96 0.0162644 1300 2 1 3 [+] picture button
CBG13128 ENSCBRT00000000105 C30G12.2 [Source:RefSeq_peptide;Acc:NP_495520]C30G12.2 [Source:RefSeq_peptide;Acc:NP_495520] BY ORTHOLOGY TO:C30G12.2
16.8972 -14.16 0.0163855 1300 6 1 5 [+] picture button
CBG01589 ENSCBRT00000005487 F35H10.6 [Source:RefSeq_peptide;Acc:NP_501397]F35H10.6 [Source:RefSeq_peptide;Acc:NP_501397] BY ORTHOLOGY TO:F35H10.6
16.8597 -23.88 0.0171 1300 2 1 2 [+] picture button
CBG10143 ENSCBRT00000007434 M01A8.1 [Source:RefSeq_peptide;Acc:NP_499045]M01A8.1 [Source:RefSeq_peptide;Acc:NP_499045] BY ORTHOLOGY TO:M01A8.1
16.8597 -25.18 0.0171 1300 4 2 7 [+] picture button
CBG02311 ENSCBRT00000006700 structural maintenance of chromosomes 5 [Source:MarkerSymbol;Acc:MGI:2385088]structural maintenance of chromosomes 5 [Source:MarkerSymbol;Acc:MGI:2385088] BY ORTHOLOGY TO:ENSMUST00000036334
16.8405 -17.55 0.0174772 1300 5 1 5 [+] picture button
CBG22545 ENSCBRT00000006037 R02D3.7 [Source:RefSeq_peptide;Acc:NP_499886]R02D3.7 [Source:RefSeq_peptide;Acc:NP_499886] BY ORTHOLOGY TO:R02D3.7
16.8147 -17.34 0.0179964 1300 3 1 4 [+] picture button
CBG15420 ENSCBRT00000010752 K09E2.1 [Source:RefSeq_peptide;Acc:NP_509469]K09E2.1 [Source:RefSeq_peptide;Acc:NP_509469] BY ORTHOLOGY TO:K09E2.1
16.8027 -15.87 0.0182446 1300 4 1 4 [+] picture button
CBG08053 ENSCBRT00000003457 Putative neuropeptide Y receptor (NPY-R). [Source:Uniprot/SWISSPROT;Acc:Q18179]Putative neuropeptide Y receptor (NPY-R). [Source:Uniprot/SWISSPROT;Acc:Q18179] BY ORTHOLOGY TO:C25G6.5
16.7622 -17.3 0.0191022 1300 8 1 8 [+] picture button
CBG19540 ENSCBRT00000001764 Serpentine Receptor, class I family member (sri-38) [Source:RefSeq_peptide;Acc:NP_494305]Serpentine Receptor, class I family member (sri-38) [Source:RefSeq_peptide;Acc:NP_494305] BY ORTHOLOGY TO:D2062.8
16.7591 -20.94 0.0191697 1300 3 1 3 [+] picture button
CBG14631 ENSCBRT00000003208 Serpentine Receptor, class U family member (sru-48) [Source:RefSeq_peptide;Acc:NP_508881]Serpentine Receptor, class U family member (sru-48) [Source:RefSeq_peptide;Acc:NP_508881] BY ORTHOLOGY TO:T03G11.2
16.7196 -22.48 0.0200491 1300 6 1 6 [+] picture button
CBG22306 ENSCBRT00000003922 inx-6 encodes an innexin, an integral transmembrane channel protein that is a structural component of invertebrate gap junctions. INX-6 is required for formation of pharyngeal gap junctions and thus for the electrical coupling and synchronous muscle contractions necessary for normal feeding behavior and postembryonic development. INX-6 may function redundantly with EAT-5, another C. elegans innexin. INX-6 expression is first detected in embryonic pharyngeal precursors and during later larval and adult stages, in pharyngeal corpus muscles and isthmus marginal cells, where INX-6 localizes to plaque-like structures in the plasma membrane. [Source: WormBase]inx-6 encodes an innexin, an integral transmembrane channel protein that is a structural component of invertebrate gap junctions. INX-6 is required for formation of pharyngeal gap junctions and thus for the electrical coupling and synchronous muscle contractions necessary for normal feeding behavior and postembryonic development. INX-6 may function redundantly with EAT-5, another C. elegans innexin. INX-6 expression is first detected in embryonic pharyngeal precursors and during later larval and adult stages, in pharyngeal corpus muscles and isthmus marginal cells, where INX-6 localizes to plaque-like structures in the plasma membrane. [Source: WormBase] BY ORTHOLOGY TO:C36H8.2
16.6282 -15.26 0.0222358 1300 3 1 3 [+] picture button

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