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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-87

171 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG23229 ENSCBRT00000012194 C55A6.2 [Source:RefSeq_peptide;Acc:NP_505918]C55A6.2 [Source:RefSeq_peptide;Acc:NP_505918] BY ORTHOLOGY TO:C55A6.2
16.1658 -17 0.000329571 1300 2 1 2 [+] picture button
CBG04406 ENSCBRT00000008904 Thymidine kinase, cytosolic (EC 2.7.1.21). [Source:Uniprot/SWISSPROT;Acc:P04183]Thymidine kinase, cytosolic (EC 2.7.1.21). [Source:Uniprot/SWISSPROT;Acc:P04183] BY ORTHOLOGY TO:ENSORLT00000015402
16.935 -24.97 0.000617839 1300 2 1 3 [+] picture button
CBG21226 ENSCBRT00000000862 T03F6.4 [Source:RefSeq_peptide;Acc:NP_499757]T03F6.4 [Source:RefSeq_peptide;Acc:NP_499757] BY ORTHOLOGY TO:T03F6.4
16.6109 -18.03 0.00116591 1300 4 2 4 [+] picture button
CBG00733 ENSCBRT00000003342 conserved hypothetical proteinconserved hypothetical protein BY ORTHOLOGY TO:AAEL007316-RA
16.5148 -26.08 0.00140561 1300 4 2 5 [+] picture button
CBG00962 ENSCBRT00000002270 Era (G-protein)-like 1 [Source:RefSeq_peptide;Acc:NP_001013247]Era (G-protein)-like 1 [Source:RefSeq_peptide;Acc:NP_001013247] BY ORTHOLOGY TO:ENSRNOT00000014386
16.3094 -17.68 0.00156318 1300 4 1 3 [+] picture button
CBG24142 ENSCBRT00000004070 Uncharacterized protein C9orf114. [Source:Uniprot/SWISSPROT;Acc:Q5T280]Uncharacterized protein C9orf114. [Source:Uniprot/SWISSPROT;Acc:Q5T280] BY ORTHOLOGY TO:ENSBTAT00000016565
16.9222 -15.72 0.00190866 1300 5 1 5 [+] picture button
CBG15142 ENSCBRT00000010331 Polyribonucleotide nucleotidyltransferase 1, mitochondrial precursor (EC 2.7.7.8) (PNPase 1) (Polynucleotide phosphorylase-like protein) (PNPase old-35) (3'-5' RNA exonuclease OLD35). [Source:Uniprot/SWISSPROT;Acc:Q8TCS8]Polyribonucleotide nucleotidyltransferase 1, mitochondrial precursor (EC 2.7.7.8) (PNPase 1) (Polynucleotide phosphorylase-like protein) (PNPase old-35) (3'-5' RNA exonuclease OLD35). [Source:Uniprot/SWISSPROT;Acc:Q8TCS8] BY ORTHOLOGY TO:SINFRUT00000129340
17.0958 -17.38 0.00202765 1300 3 1 3 [+] picture button
CBG02032 ENSCBRT00000005889 F53B3.6 [Source:RefSeq_peptide;Acc:NP_508496]F53B3.6 [Source:RefSeq_peptide;Acc:NP_508496] BY ORTHOLOGY TO:F53B3.6
16.5259 -21.39 0.00209661 1300 4 1 3 [+] picture button
CBG19769 ENSCBRT00000000368 integrator complex subunit 4 [Source:MarkerSymbol;Acc:MGI:1917164]integrator complex subunit 4 [Source:MarkerSymbol;Acc:MGI:1917164] BY ORTHOLOGY TO:ENSMUST00000026126
16.4656 -17.3 0.00213741 1300 1 2 1 [+] picture button
CBG15713 ENSCBRT00000012001 TFIIH basal transcription factor complex helicase subunit (EC 3.6.1.-) (DNA-repair protein complementing XP-D cells) (Xeroderma pigmentosum group D-complementing protein) (CXPD) (DNA excision repair protein ERCC-2). [Source:Uniprot/SWISSPROT;Acc:P18074]TFIIH basal transcription factor complex helicase subunit (EC 3.6.1.-) (DNA-repair protein complementing XP-D cells) (Xeroderma pigmentosum group D-complementing protein) (CXPD) (DNA excision repair protein ERCC-2). [Source:Uniprot/SWISSPROT;Acc:P18074] BY ORTHOLOGY TO:ENSGACT00000016441
16.3916 -17.09 0.00261059 1300 6 1 5 [+] picture button
CBG03387 ENSCBRT00000007149 Enoyl-CoA Hydratase family member (ech-8) [Source:RefSeq_peptide;Acc:NP_501876]Enoyl-CoA Hydratase family member (ech-8) [Source:RefSeq_peptide;Acc:NP_501876] BY ORTHOLOGY TO:F01G10.2
16.1324 -19.3 0.00262724 1300 3 1 2 [+] picture button
CBG03530 ENSCBRT00000006231 Y69H2.13 [Source:RefSeq_peptide;Acc:NP_507641]Y69H2.13 [Source:RefSeq_peptide;Acc:NP_507641] BY ORTHOLOGY TO:Y69H2.13
16.9135 -21.44 0.00272911 1300 1 1 1 [+] picture button
CBG00005 ENSCBRT00000000227 ZK783.1 is homologous to human fibrillin-1 (FBN1), which when mutated leads to Marfan syndrome (OMIM:154700). [Source: WormBase]ZK783.1 is homologous to human fibrillin-1 (FBN1), which when mutated leads to Marfan syndrome (OMIM:154700). [Source: WormBase] BY ORTHOLOGY TO:ZK783.1
16.2089 -18.47 0.00276083 1300 2 2 4 [+] picture button
CBG14716 ENSCBRT00000006789 T22B7.4 [Source:RefSeq_peptide;Acc:NP_508949]T22B7.4 [Source:RefSeq_peptide;Acc:NP_508949] BY ORTHOLOGY TO:T22B7.4
16.2937 -16.46 0.00325907 1300 5 1 4 [+] picture button
CBG19789 ENSCBRT00000000387 Y105E8A.23 [Source:RefSeq_peptide;Acc:NP_740951]Y105E8A.23 [Source:RefSeq_peptide;Acc:NP_740951] BY ORTHOLOGY TO:Y105E8A.23
16.4094 -19.7 0.00329434 1300 7 1 12 [+] picture button
CBG20951 ENSCBRT00000000611 Serpentine Receptor, class E (epsilon) family member (sre-41) [Source:RefSeq_peptide;Acc:NP_496628]Serpentine Receptor, class E (epsilon) family member (sre-41) [Source:RefSeq_peptide;Acc:NP_496628] BY ORTHOLOGY TO:Y57A10B.5
15.9151 -13.97 0.00329434 1300 7 1 6 [+] picture button
CBG04572 ENSCBRT00000010471 hot-1 encodes a predicted paralog of ODR-2 and contains a Ly-6 domain. may be expressed in neurons. [Source: WormBase]hot-1 encodes a predicted paralog of ODR-2 and contains a Ly-6 domain. may be expressed in neurons. [Source: WormBase] BY ORTHOLOGY TO:F43D2.4
16.0538 -15.49 0.0034092 1300 1 1 1 [+] picture button
CBG04593 ENSCBRT00000010488 R02D5.6 [Source:RefSeq_peptide;Acc:NP_506596]R02D5.6 [Source:RefSeq_peptide;Acc:NP_506596] BY ORTHOLOGY TO:R02D5.6
16.3579 -18 0.0036134 1300 4 1 3 [+] picture button
CBG14232 ENSCBRT00000002672 Unidentified Vitellogenin-linked Transcript family member (uvt-5) [Source:RefSeq_peptide;Acc:NP_508608]Unidentified Vitellogenin-linked Transcript family member (uvt-5) [Source:RefSeq_peptide;Acc:NP_508608] BY ORTHOLOGY TO:F56B6.4c
15.8431 -19.34 0.0037728 1300 3 1 3 [+] picture button
CBG16255 ENSCBRT00000012635 Putative inner dynein arm light chain, axonemal. [Source:Uniprot/SWISSPROT;Acc:Q9VGG6]Putative inner dynein arm light chain, axonemal. [Source:Uniprot/SWISSPROT;Acc:Q9VGG6] BY ORTHOLOGY TO:CG6971-RA
15.739 -20.07 0.00380417 1300 6 1 7 [+] picture button
CBG09753 ENSCBRT00000008072 transcription factor 2B [Source:RefSeq_peptide;Acc:NP_001003905]transcription factor 2B [Source:RefSeq_peptide;Acc:NP_001003905] BY ORTHOLOGY TO:ENSBTAT00000018422
15.991 -15.14 0.00384022 1300 2 1 2 [+] picture button
CBG03143 ENSCBRT00000006923 Kelch-like protein 2 (Actin-binding protein Mayven). [Source:Uniprot/SWISSPROT;Acc:O95198]Kelch-like protein 2 (Actin-binding protein Mayven). [Source:Uniprot/SWISSPROT;Acc:O95198] BY ORTHOLOGY TO:ENSGALT00000015553
16.1534 -19.19 0.00397088 1300 3 1 4 [+] picture button
CBG08984 ENSCBRT00000008493 ZC581.2 [Source:RefSeq_peptide;Acc:NP_491912]ZC581.2 [Source:RefSeq_peptide;Acc:NP_491912] BY ORTHOLOGY TO:ZC581.2
15.7037 -15.24 0.00406618 1300 2 1 1 [+] picture button
CBG15276 ENSCBRT00000010461 Y55B1AL.1 [Source:RefSeq_peptide;Acc:NP_497211]Y55B1AL.1 [Source:RefSeq_peptide;Acc:NP_497211] BY ORTHOLOGY TO:Y55B1AL.1
15.5948 -15.07 0.00414334 1300 5 1 4 [+] picture button
CBG12022 ENSCBRT00000011698 DNA mismatch repair protein Msh2 (MutS protein homolog 2). [Source:Uniprot/SWISSPROT;Acc:P43246]DNA mismatch repair protein Msh2 (MutS protein homolog 2). [Source:Uniprot/SWISSPROT;Acc:P43246] BY ORTHOLOGY TO:ENSMMUT00000001393
15.9478 -19.07 0.00416661 1300 3 1 3 [+] picture button
CBG01602 ENSCBRT00000005497 F17E9.8 [Source:RefSeq_peptide;Acc:NP_501410]F17E9.8 [Source:RefSeq_peptide;Acc:NP_501410] BY ORTHOLOGY TO:F17E9.8
15.9311 -20.43 0.00429997 1300 5 1 5 [+] picture button
CBG17988 ENSCBRT00000003028 B0393.5 [Source:RefSeq_peptide;Acc:NP_497982]B0393.5 [Source:RefSeq_peptide;Acc:NP_497982] BY ORTHOLOGY TO:B0393.5
15.9177 -13.19 0.00441024 1300 2 1 2 [+] picture button
CBG04613 ENSCBRT00000010503 F23B12.4 [Source:RefSeq_peptide;Acc:NP_506578]F23B12.4 [Source:RefSeq_peptide;Acc:NP_506578] BY ORTHOLOGY TO:F23B12.4
15.9478 -16.04 0.00445717 1300 4 2 4 [+] picture button
CBG03081 ENSCBRT00000006987 F59B10.5 [Source:RefSeq_peptide;Acc:NP_496266]F59B10.5 [Source:RefSeq_peptide;Acc:NP_496266] BY ORTHOLOGY TO:F59B10.5
15.9357 -13.29 0.00456879 1300 3 1 3 [+] picture button
CBG15766 ENSCBRT00000012106 unc-71 encodes an ADAM, a disintegrin and metalloprotease-containing transmembrane protein that is a member of the metzincin superfamily of proteases. UNC-71 is required non-cell autonomously for motor axon guidance and sex myoblast migration. UNC-71 does not appear to have an active metalloprotease domain, but functions with UNC-6/netrin and integrins INA-1/PAT-3 to provide guidance cues during axonal migration. UNC-71 is expressed in a restricted pattern in the excretory and excretory gland cells, some head neurons, the sphincter muscles, and hypodermal cells surrounding the vulva. [Source: WormBase]unc-71 encodes an ADAM, a disintegrin and metalloprotease-containing transmembrane protein that is a member of the metzincin superfamily of proteases. UNC-71 is required non-cell autonomously for motor axon guidance and sex myoblast migration. UNC-71 does not appear to have an active metalloprotease domain, but functions with UNC-6/netrin and integrins INA-1/PAT-3 to provide guidance cues during axonal migration. UNC-71 is expressed in a restricted pattern in the excretory and excretory gland cells, some head neurons, the sphincter muscles, and hypodermal cells surrounding the vulva. [Source: WormBase] BY ORTHOLOGY TO:Y37D8A.13
16.9239 -22.43 0.00468692 1300 5 1 9 [+] picture button
CBG10092 ENSCBRT00000007244 Probable tyrosine-protein phosphatase F54C8.4 (EC 3.1.3.48). [Source:Uniprot/SWISSPROT;Acc:P34442]Probable tyrosine-protein phosphatase F54C8.4 (EC 3.1.3.48). [Source:Uniprot/SWISSPROT;Acc:P34442] BY ORTHOLOGY TO:F54C8.4
15.9228 -16.49 0.00495218 1300 4 2 6 [+] picture button
CBG18544 ENSCBRT00000010683 Phosphodiesterase 8 CG5411-PC, isoform C [Source:RefSeq_peptide;Acc:NP_726353]Phosphodiesterase 8 CG5411-PC, isoform C [Source:RefSeq_peptide;Acc:NP_726353] BY ORTHOLOGY TO:CG5411-RA
15.8359 -14.5 0.00514165 1300 5 1 6 [+] picture button
CBG22810 ENSCBRT00000008949 W08G11.4 [Source:RefSeq_peptide;Acc:NP_507133]W08G11.4 [Source:RefSeq_peptide;Acc:NP_507133] BY ORTHOLOGY TO:W08G11.4
16.4868 -15 0.00517922 1300 2 1 4 [+] picture button
CBG22102 ENSCBRT00000004315 Temporarily Assigned Gene name family member (tag-146) [Source:RefSeq_peptide;Acc:NP_491744]Temporarily Assigned Gene name family member (tag-146) [Source:RefSeq_peptide;Acc:NP_491744] BY ORTHOLOGY TO:C27A12.3
18.5068 -19.17 0.00518933 1300 6 1 14 [+] picture button
CBG02358 ENSCBRT00000006663 ptr-6 encodes an ortholog of Drosophila and human PTCHD3, which defines one of seven paralogous families of sterol sensing domain (SSD) proteins. PTR-6 is weakly required for normal molting from L4 to adult stages. however, PTR-6 in conjunction with PTR-1 and PTR-10 is strongly required for both molting and viability, with triple ptr-1/-6/-10 RNAi animals showing pronounced molting defects and lethality. PTR-6 is also required for normal growth to full size and locomotion. [Source: WormBase]ptr-6 encodes an ortholog of Drosophila and human PTCHD3, which defines one of seven paralogous families of sterol sensing domain (SSD) proteins. PTR-6 is weakly required for normal molting from L4 to adult stages. however, PTR-6 in conjunction with PTR-1 and PTR-10 is strongly required for both molting and viability, with triple ptr-1/-6/-10 RNAi animals showing pronounced molting defects and lethality. PTR-6 is also required for normal growth to full size and locomotion. [Source: WormBase] BY ORTHOLOGY TO:C54A12.1
15.8469 -23.08 0.00548541 1300 3 2 8 [+] picture button
CBG03505 ENSCBRT00000006199 Diacylglycerol kinase kappa (EC 2.7.1.107) (Diglyceride kinase kappa) (DGK-kappa) (DAG kinase kappa) (142 kDa diacylglycerol kinase). [Source:Uniprot/SWISSPROT;Acc:Q5KSL6]Diacylglycerol kinase kappa (EC 2.7.1.107) (Diglyceride kinase kappa) (DGK-kappa) (DAG kinase kappa) (142 kDa diacylglycerol kinase). [Source:Uniprot/SWISSPROT;Acc:Q5KSL6] BY ORTHOLOGY TO:ENSORLT00000010561
16.1405 -18.46 0.00549877 1300 2 1 2 [+] picture button
CBG16699 ENSCBRT00000014649 F48E3.9 [Source:RefSeq_peptide;Acc:NP_509264]F48E3.9 [Source:RefSeq_peptide;Acc:NP_509264] BY ORTHOLOGY TO:F48E3.9
15.8542 -21.22 0.00593256 1300 7 2 7 [+] picture button
CBG00445 ENSCBRT00000001943 F11E6.8 [Source:RefSeq_peptide;Acc:NP_503111]F11E6.8 [Source:RefSeq_peptide;Acc:NP_503111] BY ORTHOLOGY TO:F11E6.8
16.2419 -22.71 0.00593694 1300 4 1 4 [+] picture button
CBG14931 ENSCBRT00000004407 CDNA FLJ42912 fis, clone BRHIP3024533. (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q6ZV75]CDNA FLJ42912 fis, clone BRHIP3024533. (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q6ZV75] BY ORTHOLOGY TO:ENSMMUT00000006461
15.7509 -20.34 0.00602376 1300 2 1 2 [+] picture button
CBG14461 ENSCBRT00000003561 AP-50 CG7057-PA, isoform A [Source:RefSeq_peptide;Acc:NP_732744]AP-50 CG7057-PA, isoform A [Source:RefSeq_peptide;Acc:NP_732744] BY ORTHOLOGY TO:CG7057-RA
15.9617 -17.68 0.00619895 1300 2 1 3 [+] picture button
CBG15804 ENSCBRT00000011329 T22H2.5 encodes a homolog of human scramblase (PLSCR1. OMIM:604170), which is activated by a rise of intracellular calcium, and which promotes the exposure of phosphatidylserine on the surface of cells undergoing activation, injury, or apoptosis. closely related paralogs of T22H2.5 include C04E12.7 and ZK1053.5. [Source: WormBase]T22H2.5 encodes a homolog of human scramblase (PLSCR1. OMIM:604170), which is activated by a rise of intracellular calcium, and which promotes the exposure of phosphatidylserine on the surface of cells undergoing activation, injury, or apoptosis. closely related paralogs of T22H2.5 include C04E12.7 and ZK1053.5. [Source: WormBase] BY ORTHOLOGY TO:T22H2.5b
18.3291 -26.23 0.00620267 1300 5 1 5 [+] picture button
CBG16182 ENSCBRT00000012593 guanine nucleotide binding protein, alpha 13 [Source:MarkerSymbol;Acc:MGI:95768]guanine nucleotide binding protein, alpha 13 [Source:MarkerSymbol;Acc:MGI:95768] BY ORTHOLOGY TO:ENSMUST00000020930
15.8163 -15.12 0.00664271 1300 2 1 2 [+] picture button
CBG12994 ENSCBRT00000012945 ZK1290.11 [Source:RefSeq_peptide;Acc:NP_495586]ZK1290.11 [Source:RefSeq_peptide;Acc:NP_495586] BY ORTHOLOGY TO:ZK1290.11
15.9357 -16.38 0.00703881 1300 3 2 4 [+] picture button
CBG14959 ENSCBRT00000004431 DNA mismatch repair protein mutsDNA mismatch repair protein muts BY ORTHOLOGY TO:AAEL011780-RA
15.9551 -18.64 0.00710543 1300 4 1 4 [+] picture button
CBG12769 ENSCBRT00000013711 The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). [Source: WormBase]The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). [Source: WormBase] BY ORTHOLOGY TO:C37A2.2
15.6501 -14.92 0.00725901 1300 6 1 6 [+] picture button
CBG11504 ENSCBRT00000013825 T01D3.3b [Source:RefSeq_peptide;Acc:NP_506389]T01D3.3b [Source:RefSeq_peptide;Acc:NP_506389] BY ORTHOLOGY TO:T01D3.3b
15.6406 -16.17 0.00774349 1300 3 2 5 [+] picture button
CBG18209 ENSCBRT00000003385 This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins. [Source: WormBase]This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins. [Source: WormBase] BY ORTHOLOGY TO:C27F2.7
15.5926 -23.13 0.0080676 1300 2 2 2 [+] picture button
CBG14248 ENSCBRT00000002691 R11G1.6b [Source:RefSeq_peptide;Acc:NP_741753]R11G1.6b [Source:RefSeq_peptide;Acc:NP_741753] BY ORTHOLOGY TO:R11G1.6b
15.621 -18.79 0.00811453 1300 2 2 2 [+] picture button
CBG19340 ENSCBRT00000013528 Homolog of Homo sapiens "Splice Isoform Beta of Tissue factor pathway inhibitor precursor [Source:IPI;Acc:IPI00218184]"Homolog of Homo sapiens "Splice Isoform Beta of Tissue factor pathway inhibitor precursor [Source:IPI;Acc:IPI00218184]" BY ORTHOLOGY TO:SINFRUT00000129274
15.7275 -13 0.00829761 1300 2 2 2 [+] picture button
CBG12909 ENSCBRT00000013753 CDK5 regulatory subunit-associated protein 3 (CDK5 activator-binding protein C53) (HSF-27 protein). [Source:Uniprot/SWISSPROT;Acc:Q96JB5]CDK5 regulatory subunit-associated protein 3 (CDK5 activator-binding protein C53) (HSF-27 protein). [Source:Uniprot/SWISSPROT;Acc:Q96JB5] BY ORTHOLOGY TO:ENSOANT00000021126
18.0034 -26.45 0.0085956 1300 9 1 9 [+] picture button

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