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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-86

101 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG06077 ENSCBRT00000008469 T01G1.2 [Source:RefSeq_peptide;Acc:NP_502143]T01G1.2 [Source:RefSeq_peptide;Acc:NP_502143] BY ORTHOLOGY TO:T01G1.2
17.4793 -20.8 0.000888251 1300 4 2 4 [+] picture button
CBG07668 ENSCBRT00000010616 Protein FAM20B precursor. [Source:Uniprot/SWISSPROT;Acc:O75063]Protein FAM20B precursor. [Source:Uniprot/SWISSPROT;Acc:O75063] BY ORTHOLOGY TO:ENSMODT00000007653
16.6799 -19.78 0.00126779 1300 3 2 4 [+] picture button
CBG16834 ENSCBRT00000012758 cca-1 encodes a calcium channel alpha subunit that is homologous to vertebrate T-type calcium channel alpha 1 subunits. CCA-1 is required for regulation of pharyngeal pumping, specifically for the efficient initiation of action potentials in the pharynx in response to excitatory inputs. a CCA-1::GFP fusion protein is expressed strongly in pharyngeal muscle as well as in many neurons, including particular subsets of neurons in the head, pharynx, ventral nerve cord, and anal ganglia. [Source: WormBase]cca-1 encodes a calcium channel alpha subunit that is homologous to vertebrate T-type calcium channel alpha 1 subunits. CCA-1 is required for regulation of pharyngeal pumping, specifically for the efficient initiation of action potentials in the pharynx in response to excitatory inputs. a CCA-1::GFP fusion protein is expressed strongly in pharyngeal muscle as well as in many neurons, including particular subsets of neurons in the head, pharynx, ventral nerve cord, and anal ganglia. [Source: WormBase] BY ORTHOLOGY TO:C54D2.5a
16.6128 -16.43 0.00157027 1300 5 2 5 [+] picture button
CBG05861 ENSCBRT00000009242 B0496.5 [Source:RefSeq_peptide;Acc:NP_501183]B0496.5 [Source:RefSeq_peptide;Acc:NP_501183] BY ORTHOLOGY TO:B0496.5
16.3226 -21.19 0.00166719 1300 2 1 3 [+] picture button
CBG06679 ENSCBRT00000009695 C56A3.4 [Source:RefSeq_peptide;Acc:NP_506354]C56A3.4 [Source:RefSeq_peptide;Acc:NP_506354] BY ORTHOLOGY TO:C56A3.4
18.1861 -20.32 0.00356469 1300 3 1 3 [+] picture button
CBG01955 ENSCBRT00000005823 C17G1.5 [Source:RefSeq_peptide;Acc:NP_509668]C17G1.5 [Source:RefSeq_peptide;Acc:NP_509668] BY ORTHOLOGY TO:C17G1.5
17.1116 -22.23 0.00469614 1300 6 1 6 [+] picture button
CBG04075 ENSCBRT00000009863 tba-5 encodes one of nine C. elegans alpha tubulins. by homology, TBA-5 is predicted to be a component of microtubules. as loss of tba-5 function via RNA-mediated interference (RNAi) does not result in any obvious abnormalities, TBA-5 likely functions redundantly with other alpha tubulins as a basic component of cellular architecture that may play additional roles in processes such as cell division, cell movement, and intracellular transport. [Source: WormBase]tba-5 encodes one of nine C. elegans alpha tubulins. by homology, TBA-5 is predicted to be a component of microtubules. as loss of tba-5 function via RNA-mediated interference (RNAi) does not result in any obvious abnormalities, TBA-5 likely functions redundantly with other alpha tubulins as a basic component of cellular architecture that may play additional roles in processes such as cell division, cell movement, and intracellular transport. [Source: WormBase] BY ORTHOLOGY TO:F16D3.1
15.6319 -16.72 0.00477482 1300 4 1 4 [+] picture button
CBG13500 ENSCBRT00000009376 K02D7.5 [Source:RefSeq_peptide;Acc:NP_499901]K02D7.5 [Source:RefSeq_peptide;Acc:NP_499901] BY ORTHOLOGY TO:K02D7.5
16.0712 -16.3 0.00519007 1300 3 1 3 [+] picture button
CBG18961 ENSCBRT00000014138 F-box only protein 11 (Vitiligo-associated protein VIT-1). [Source:Uniprot/SWISSPROT;Acc:Q86XK2]F-box only protein 11 (Vitiligo-associated protein VIT-1). [Source:Uniprot/SWISSPROT;Acc:Q86XK2] BY ORTHOLOGY TO:ENSXETT00000049018
15.9461 -19.78 0.00528255 1300 3 2 3 [+] picture button
CBG04200 ENSCBRT00000007606 GPI ethanolamine phosphate transferase 1 (EC 2.-.-.-) (Phosphatidylinositol-glycan biosynthesis class N protein) (PIG-N) (MCD4 homolog). [Source:Uniprot/SWISSPROT;Acc:O95427]GPI ethanolamine phosphate transferase 1 (EC 2.-.-.-) (Phosphatidylinositol-glycan biosynthesis class N protein) (PIG-N) (MCD4 homolog). [Source:Uniprot/SWISSPROT;Acc:O95427] BY ORTHOLOGY TO:ENSGACT00000003180
17.8281 -16.36 0.00544368 1300 5 1 6 [+] picture button
CBG14099 ENSCBRT00000002555 F49H12.5 [Source:RefSeq_peptide;Acc:NP_508381]F49H12.5 [Source:RefSeq_peptide;Acc:NP_508381] BY ORTHOLOGY TO:F49H12.5
15.5674 -10.94 0.00550322 1300 4 1 4 [+] picture button
CBG16488 ENSCBRT00000014629 Pnpo protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q6PG36]Pnpo protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q6PG36] BY ORTHOLOGY TO:ENSDART00000022724
15.964 -22.07 0.00619549 1300 4 1 3 [+] picture button
CBG08704 ENSCBRT00000002896 Y49G5B.1 [Source:RefSeq_peptide;Acc:NP_504396]Y49G5B.1 [Source:RefSeq_peptide;Acc:NP_504396] BY ORTHOLOGY TO:Y49G5B.1
15.5255 -12.81 0.00636125 1300 4 1 4 [+] picture button
CBG12270 ENSCBRT00000013325 Uncharacterized protein C02C2.5. [Source:Uniprot/SWISSPROT;Acc:P34273]Uncharacterized protein C02C2.5. [Source:Uniprot/SWISSPROT;Acc:P34273] BY ORTHOLOGY TO:C02C2.5
16.2768 -16.78 0.00667285 1300 5 1 5 [+] picture button
CBG20858 ENSCBRT00000001285 C01G12.1 [Source:RefSeq_peptide;Acc:NP_497028]C01G12.1 [Source:RefSeq_peptide;Acc:NP_497028] BY ORTHOLOGY TO:C01G12.1
15.5332 -13.07 0.00715484 1300 7 1 12 [+] picture button
CBG14762 ENSCBRT00000006764 The puf-9 gene encodes a predicted RNA binding protein orthologous to Drosophila PUMILIO and human PUMILIO 2 (OMIM:607205). PUF-9 is required for normal locomotion and fluid balance, and is expressed primarily in somatic tissues. PUF-9 contains a glutamine/asparagine-rich domain. [Source: WormBase]The puf-9 gene encodes a predicted RNA binding protein orthologous to Drosophila PUMILIO and human PUMILIO 2 (OMIM:607205). PUF-9 is required for normal locomotion and fluid balance, and is expressed primarily in somatic tissues. PUF-9 contains a glutamine/asparagine-rich domain. [Source: WormBase] BY ORTHOLOGY TO:W06B11.2
17.5738 -18.78 0.00734839 1300 5 2 5 [+] picture button
CBG13774 ENSCBRT00000012746 C08F8.6 [Source:RefSeq_peptide;Acc:NP_502093]C08F8.6 [Source:RefSeq_peptide;Acc:NP_502093] BY ORTHOLOGY TO:C08F8.6
15.9461 -22.73 0.00743513 1300 3 1 3 [+] picture button
CBG00323 ENSCBRT00000012694 Serpentine Receptor, class V family member (srv-11) [Source:RefSeq_peptide;Acc:NP_502922]Serpentine Receptor, class V family member (srv-11) [Source:RefSeq_peptide;Acc:NP_502922] BY ORTHOLOGY TO:H25K10.3
16.672 -17.39 0.00743513 1300 3 1 3 [+] picture button
CBG09586 ENSCBRT00000005909 Actin-like protein 2 (Actin-related protein 2). [Source:Uniprot/SWISSPROT;Acc:P61160]Actin-like protein 2 (Actin-related protein 2). [Source:Uniprot/SWISSPROT;Acc:P61160] BY ORTHOLOGY TO:ENST00000377982
15.5379 -12.1 0.00837948 1300 1 2 1 [+] picture button
CBG22870 ENSCBRT00000008962 Nuclear Hormone Receptor family member (nhr-102) [Source:RefSeq_peptide;Acc:NP_506967]Nuclear Hormone Receptor family member (nhr-102) [Source:RefSeq_peptide;Acc:NP_506967] BY ORTHOLOGY TO:T06C12.6
15.3731 -12.29 0.00839514 1300 2 1 3 [+] picture button
CBG20797 ENSCBRT00000001325 Member of AAA family binding CED-4 family member (mac-1) [Source:RefSeq_peptide;Acc:NP_496814]Member of AAA family binding CED-4 family member (mac-1) [Source:RefSeq_peptide;Acc:NP_496814] BY ORTHOLOGY TO:Y48C3A.7
15.5354 -15.04 0.00885911 1300 2 2 3 [+] picture button
CBG21295 ENSCBRT00000000753 Y70G10A.2 [Source:RefSeq_peptide;Acc:NP_499266]Y70G10A.2 [Source:RefSeq_peptide;Acc:NP_499266] BY ORTHOLOGY TO:Y70G10A.2
17.315 -26.75 0.00996581 1300 5 1 6 [+] picture button
CBG23388 ENSCBRT00000011507 C27A7.6 [Source:RefSeq_peptide;Acc:NP_506043]C27A7.6 [Source:RefSeq_peptide;Acc:NP_506043] BY ORTHOLOGY TO:C27A7.6
15.3686 -13.35 0.0102581 1300 2 1 2 [+] picture button
CBG14273 ENSCBRT00000002706 Putative serine/threonine-protein kinase C01C4.3 (EC 2.7.11.1). [Source:Uniprot/SWISSPROT;Acc:Q11090]Putative serine/threonine-protein kinase C01C4.3 (EC 2.7.11.1). [Source:Uniprot/SWISSPROT;Acc:Q11090] BY ORTHOLOGY TO:C01C4.3b
17.2407 -24.48 0.0108751 1300 1 1 1 [+] picture button
CBG06663 ENSCBRT00000009678 W08A12.1b [Source:RefSeq_peptide;Acc:NP_504029]W08A12.1b [Source:RefSeq_peptide;Acc:NP_504029] BY ORTHOLOGY TO:W08A12.1a
15.3625 -14.87 0.0110154 1300 4 1 3 [+] picture button
CBG16626 ENSCBRT00000014674 ZC262.2a [Source:RefSeq_peptide;Acc:NP_498836]ZC262.2a [Source:RefSeq_peptide;Acc:NP_498836] BY ORTHOLOGY TO:ZC262.2a
17.1893 -18.32 0.0115524 1300 1 1 1 [+] picture button
CBG16918 ENSCBRT00000011703 F11C1.1 [Source:RefSeq_peptide;Acc:NP_510159]F11C1.1 [Source:RefSeq_peptide;Acc:NP_510159] BY ORTHOLOGY TO:F11C1.1
17.0781 -20.68 0.0131618 1300 6 1 8 [+] picture button
CBG19837 ENSCBRT00000002401 Serpentine Receptor, class V family member (srv-19) [Source:RefSeq_peptide;Acc:NP_500878]Serpentine Receptor, class V family member (srv-19) [Source:RefSeq_peptide;Acc:NP_500878] BY ORTHOLOGY TO:H04M03.6
16.7984 -15.24 0.0182513 1300 9 1 8 [+] picture button
CBG04214 ENSCBRT00000007599 H27M09.3 [Source:RefSeq_peptide;Acc:NP_491960]H27M09.3 [Source:RefSeq_peptide;Acc:NP_491960] BY ORTHOLOGY TO:H27M09.3
16.787 -16.19 0.0184966 1300 3 1 3 [+] picture button
CBG00660 ENSCBRT00000003227 F35C11.4 [Source:RefSeq_peptide;Acc:NP_495738]F35C11.4 [Source:RefSeq_peptide;Acc:NP_495738] BY ORTHOLOGY TO:F35C11.4
16.7681 -18.14 0.0189071 1300 5 1 5 [+] picture button
CBG19370 ENSCBRT00000013552 F46B6.2 [Source:RefSeq_peptide;Acc:NP_505520]F46B6.2 [Source:RefSeq_peptide;Acc:NP_505520] BY ORTHOLOGY TO:F46B6.2
16.6899 -19.85 0.0207087 1300 3 1 4 [+] picture button
CBG21107 ENSCBRT00000000851 Serine/threonine-protein kinase SULU (EC 2.7.11.1) (Protein kinase 18). [Source:Uniprot/SWISSPROT;Acc:P46549]Serine/threonine-protein kinase SULU (EC 2.7.11.1) (Protein kinase 18). [Source:Uniprot/SWISSPROT;Acc:P46549] BY ORTHOLOGY TO:T17E9.1a
16.6899 -16.27 0.0207087 1300 3 1 3 [+] picture button
CBG16664 ENSCBRT00000014706 C30A5.6 [Source:RefSeq_peptide;Acc:NP_498792]C30A5.6 [Source:RefSeq_peptide;Acc:NP_498792] BY ORTHOLOGY TO:C30A5.6
16.6899 -22.24 0.0207087 1300 6 1 6 [+] picture button
CBG23962 ENSCBRT00000008976 Y69E1A.2 [Source:RefSeq_peptide;Acc:NP_502039]Y69E1A.2 [Source:RefSeq_peptide;Acc:NP_502039] BY ORTHOLOGY TO:Y69E1A.2
16.6615 -18.36 0.0214048 1300 1 1 1 [+] picture button
CBG19122 ENSCBRT00000013882 Probable 6-phosphofructokinase (EC 2.7.1.11) (Phosphofructokinase) (Phosphohexokinase). [Source:Uniprot/SWISSPROT;Acc:Q27483]Probable 6-phosphofructokinase (EC 2.7.1.11) (Phosphofructokinase) (Phosphohexokinase). [Source:Uniprot/SWISSPROT;Acc:Q27483] BY ORTHOLOGY TO:C50F4.2
16.6291 -23.68 0.0222265 1300 3 1 4 [+] picture button
CBG05646 ENSCBRT00000005433 Y59A8B.21 [Source:RefSeq_peptide;Acc:NP_507519]Y59A8B.21 [Source:RefSeq_peptide;Acc:NP_507519] BY ORTHOLOGY TO:Y59A8B.21
16.5863 -13.32 0.0233583 1300 6 1 7 [+] picture button
CBG07390 ENSCBRT00000011828 C04A11.2 [Source:RefSeq_peptide;Acc:NP_510289]C04A11.2 [Source:RefSeq_peptide;Acc:NP_510289] BY ORTHOLOGY TO:C04A11.2
16.5641 -12.44 0.0239672 1300 6 1 8 [+] picture button
CBG14589 ENSCBRT00000003284 ZC449.2 [Source:RefSeq_peptide;Acc:NP_508854]ZC449.2 [Source:RefSeq_peptide;Acc:NP_508854] BY ORTHOLOGY TO:ZC449.2
16.5615 -22.07 0.0240392 1300 5 1 5 [+] picture button
CBG23956 ENSCBRT00000008759 K07D4.6 [Source:RefSeq_peptide;Acc:NP_494708]K07D4.6 [Source:RefSeq_peptide;Acc:NP_494708] BY ORTHOLOGY TO:K07D4.6
16.5396 -17.96 0.0246574 1300 3 1 4 [+] picture button
CBG19313 ENSCBRT00000013508 RNA polymerase-associated protein RTF1 homolog. [Source:Uniprot/SWISSPROT;Acc:Q92541]RNA polymerase-associated protein RTF1 homolog. [Source:Uniprot/SWISSPROT;Acc:Q92541] BY ORTHOLOGY TO:ENSMMUT00000021709
16.5333 -15.42 0.024836 1300 3 1 3 [+] picture button
CBG06639 ENSCBRT00000009655 ADP-sugar pyrophosphatase (EC 3.6.1.13) (EC 3.6.1.-) (Nucleoside diphosphate-linked moiety X motif 5) (Nudix motif 5) (YSA1H). [Source:Uniprot/SWISSPROT;Acc:Q9UKK9]ADP-sugar pyrophosphatase (EC 3.6.1.13) (EC 3.6.1.-) (Nucleoside diphosphate-linked moiety X motif 5) (Nudix motif 5) (YSA1H). [Source:Uniprot/SWISSPROT;Acc:Q9UKK9] BY ORTHOLOGY TO:ENST00000378937
16.527 -20.95 0.0250182 1300 6 1 6 [+] picture button
CBG20698 ENSCBRT00000001470 Y54G9A.7 [Source:RefSeq_peptide;Acc:NP_496878]Y54G9A.7 [Source:RefSeq_peptide;Acc:NP_496878] BY ORTHOLOGY TO:Y54G9A.7
16.5179 -14.55 0.0252825 1300 2 1 3 [+] picture button
CBG21660 ENSCBRT00000004597 F38E11.2 [Source:RefSeq_peptide;Acc:NP_501668]F38E11.2 [Source:RefSeq_peptide;Acc:NP_501668] BY ORTHOLOGY TO:F38E11.2
16.5157 -19.12 0.0253474 1300 3 1 3 [+] picture button
CBG08482 ENSCBRT00000000258 H02I12.1 [Source:RefSeq_peptide;Acc:NP_502145]H02I12.1 [Source:RefSeq_peptide;Acc:NP_502145] BY ORTHOLOGY TO:H02I12.1
16.5151 -17.52 0.0253646 1300 4 1 4 [+] picture button
CBG20555 ENSCBRT00000000050 F40A3.5 [Source:RefSeq_peptide;Acc:NP_505028]F40A3.5 [Source:RefSeq_peptide;Acc:NP_505028] BY ORTHOLOGY TO:F40A3.5
16.5018 -18.95 0.0257574 1300 1 1 1 [+] picture button
CBG05121 ENSCBRT00000010286 Zinc metalloproteinase nas-30 precursor (EC 3.4.24.21) (Nematode astacin 30). [Source:Uniprot/SWISSPROT;Acc:Q9N2V2]Zinc metalloproteinase nas-30 precursor (EC 3.4.24.21) (Nematode astacin 30). [Source:Uniprot/SWISSPROT;Acc:Q9N2V2] BY ORTHOLOGY TO:Y95B8A.1
16.4928 -14.15 0.0260272 1300 3 1 4 [+] picture button
CBG00234 ENSCBRT00000001498 C48C5.1 [Source:RefSeq_peptide;Acc:NP_509515]C48C5.1 [Source:RefSeq_peptide;Acc:NP_509515] BY ORTHOLOGY TO:C48C5.1
16.4874 -21.17 0.0261918 1300 2 1 2 [+] picture button
CBG01661 ENSCBRT00000005542 Y38C1AA.3 [Source:RefSeq_peptide;Acc:NP_499876]Y38C1AA.3 [Source:RefSeq_peptide;Acc:NP_499876] BY ORTHOLOGY TO:Y38C1AA.3
16.4424 -19.22 0.0275899 1300 3 2 3 [+] picture button
CBG14923 ENSCBRT00000004465 Periodic tryptophan protein 2 homolog. [Source:Uniprot/SWISSPROT;Acc:Q15269]Periodic tryptophan protein 2 homolog. [Source:Uniprot/SWISSPROT;Acc:Q15269] BY ORTHOLOGY TO:ENSOANT00000031445
16.4235 -18.5 0.0281962 1300 3 1 4 [+] picture button
CBG01518 ENSCBRT00000001855 potassium channel tetramerisation domain containing 3 [Source:MarkerSymbol;Acc:MGI:2444629]potassium channel tetramerisation domain containing 3 [Source:MarkerSymbol;Acc:MGI:2444629] BY ORTHOLOGY TO:ENSRNOT00000003556
16.349 -16.23 0.0307242 1300 6 1 7 [+] picture button

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