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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-85

141 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG16343 ENSCBRT00000011237 C06G1.1 [Source:RefSeq_peptide;Acc:NP_510689]C06G1.1 [Source:RefSeq_peptide;Acc:NP_510689] BY ORTHOLOGY TO:C06G1.1
17.018 -18.69 0.00129398 1300 2 2 2 [+] picture button
ENSCBRT00000004179 T07D1.3 [Source:RefSeq_peptide;Acc:NP_508445]T07D1.3 [Source:RefSeq_peptide;Acc:NP_508445] BY ORTHOLOGY TO:T07D1.3
16.8597 -15.11 0.00137728 1300 4 1 5 [+] picture button
CBG08530 ENSCBRT00000002888 ZC116.3 is orthologous to the human gene CUBILIN (CUBN. OMIM:602997), which when mutated leads to hereditary megaloblastic anaemia 1 (OMIM:261100). [Source: WormBase]ZC116.3 is orthologous to the human gene CUBILIN (CUBN. OMIM:602997), which when mutated leads to hereditary megaloblastic anaemia 1 (OMIM:261100). [Source: WormBase] BY ORTHOLOGY TO:ZC116.3
16.5345 -14.24 0.00149412 1300 3 2 3 [+] picture button
CBG05625 ENSCBRT00000005403 F53F8.4 [Source:RefSeq_peptide;Acc:NP_507997]F53F8.4 [Source:RefSeq_peptide;Acc:NP_507997] BY ORTHOLOGY TO:F53F8.4
16.5247 -21.21 0.00153001 1300 2 2 2 [+] picture button
CBG00117 ENSCBRT00000001545 TBC1 domain family member 13. [Source:Uniprot/SWISSPROT;Acc:Q9NVG8]TBC1 domain family member 13. [Source:Uniprot/SWISSPROT;Acc:Q9NVG8] BY ORTHOLOGY TO:ENSORLT00000024933
16.5646 -18.06 0.00211443 1300 5 1 6 [+] picture button
ENSCBRT00000011701 F11C1.2 [Source:RefSeq_peptide;Acc:NP_510158]F11C1.2 [Source:RefSeq_peptide;Acc:NP_510158] BY ORTHOLOGY TO:F11C1.2
16.1381 -17.79 0.00212297 1300 4 1 3 [+] picture button
CBG03696 ENSCBRT00000008725 F57A10.2 [Source:RefSeq_peptide;Acc:NP_506928]F57A10.2 [Source:RefSeq_peptide;Acc:NP_506928] BY ORTHOLOGY TO:F57A10.2
16.1424 -14.01 0.00260632 1300 10 1 11 [+] picture button
CBG09400 ENSCBRT00000006407 Serpentine Receptor, class D (delta) family member (srd-9) [Source:RefSeq_peptide;Acc:NP_504426]Serpentine Receptor, class D (delta) family member (srd-9) [Source:RefSeq_peptide;Acc:NP_504426] BY ORTHOLOGY TO:T09D3.1
18.6632 -24.63 0.00260652 1300 1 1 1 [+] picture button
CBG18787 ENSCBRT00000012689 K04H8.3 [Source:RefSeq_peptide;Acc:NP_493491]K04H8.3 [Source:RefSeq_peptide;Acc:NP_493491] BY ORTHOLOGY TO:K04H8.3
16.2591 -18.26 0.00265449 1300 2 1 2 [+] picture button
CBG12312 ENSCBRT00000013201 F27C1.4 [Source:RefSeq_peptide;Acc:NP_491591]F27C1.4 [Source:RefSeq_peptide;Acc:NP_491591] BY ORTHOLOGY TO:F27C1.4
16.0255 -20.77 0.00267907 1300 5 1 4 [+] picture button
CBG16502 ENSCBRT00000014618 C06E8.5 [Source:RefSeq_peptide;Acc:NP_498530]C06E8.5 [Source:RefSeq_peptide;Acc:NP_498530] BY ORTHOLOGY TO:C06E8.5
16.2242 -17.98 0.00285344 1300 3 1 3 [+] picture button
CBG19221 ENSCBRT00000013429 ptr-1 encodes an ortholog of Drosophila and human PTCHD3, which defines one of seven paralogous families of sterol sensing domain (SSD) proteins. individually, PTR-1 is weakly required for normal molting from L4 to adult stages. however, PTR-1, in conjunction with either PTR-16 alone or with PTR-6 and PTR-10, is strongly required for both molting and viability, with double ptr-1/-16 or triple ptr-1/-6/-10 RNAi animals showing pronounced molting defects and lethality. PTR-1 is also required for normal adult alae formation, growth to full size, locomotion, and male tail development. [Source: WormBase]ptr-1 encodes an ortholog of Drosophila and human PTCHD3, which defines one of seven paralogous families of sterol sensing domain (SSD) proteins. individually, PTR-1 is weakly required for normal molting from L4 to adult stages. however, PTR-1, in conjunction with either PTR-16 alone or with PTR-6 and PTR-10, is strongly required for both molting and viability, with double ptr-1/-16 or triple ptr-1/-6/-10 RNAi animals showing pronounced molting defects and lethality. PTR-1 is also required for normal adult alae formation, growth to full size, locomotion, and male tail development. [Source: WormBase] BY ORTHOLOGY TO:C24B5.3
18.8665 -24.28 0.00313337 1300 4 1 4 [+] picture button
CBG11004 ENSCBRT00000001200 F46H5.7a [Source:RefSeq_peptide;Acc:NP_741829]F46H5.7a [Source:RefSeq_peptide;Acc:NP_741829] BY ORTHOLOGY TO:F46H5.7b
15.9459 -13.57 0.00315737 1300 5 1 3 [+] picture button
CBG11401 ENSCBRT00000013999 Y97E10AR.1 [Source:RefSeq_peptide;Acc:NP_505058]Y97E10AR.1 [Source:RefSeq_peptide;Acc:NP_505058] BY ORTHOLOGY TO:Y97E10AR.1
16.149 -19.41 0.00333236 1300 2 1 2 [+] picture button
CBG18506 ENSCBRT00000000954 Serpentine Receptor, class U family member (sru-7) [Source:RefSeq_peptide;Acc:NP_501450]Serpentine Receptor, class U family member (sru-7) [Source:RefSeq_peptide;Acc:NP_501450] BY ORTHOLOGY TO:C28C12.13
16.7601 -18.11 0.00366832 1300 5 1 5 [+] picture button
CBG15276 ENSCBRT00000010461 Y55B1AL.1 [Source:RefSeq_peptide;Acc:NP_497211]Y55B1AL.1 [Source:RefSeq_peptide;Acc:NP_497211] BY ORTHOLOGY TO:Y55B1AL.1
15.7098 -8.69 0.00417813 1300 5 1 4 [+] picture button
CBG13848 ENSCBRT00000012455 M88.3 [Source:RefSeq_peptide;Acc:NP_497921]M88.3 [Source:RefSeq_peptide;Acc:NP_497921] BY ORTHOLOGY TO:M88.3
16.3566 -13.29 0.00418777 1300 4 1 6 [+] picture button
CBG05579 ENSCBRT00000005393 Serpentine Receptor, class XA family member (srxa-1) [Source:RefSeq_peptide;Acc:NP_508003]Serpentine Receptor, class XA family member (srxa-1) [Source:RefSeq_peptide;Acc:NP_508003] BY ORTHOLOGY TO:W07A8.1
16.6213 -15.91 0.00440572 1300 2 1 2 [+] picture button
CBG01488 ENSCBRT00000001878 C10B5.1 [Source:RefSeq_peptide;Acc:NP_505213]C10B5.1 [Source:RefSeq_peptide;Acc:NP_505213] BY ORTHOLOGY TO:C10B5.1
17.2114 -21.66 0.00457869 1300 4 1 3 [+] picture button
CBG10092 ENSCBRT00000007244 Probable tyrosine-protein phosphatase F54C8.4 (EC 3.1.3.48). [Source:Uniprot/SWISSPROT;Acc:P34442]Probable tyrosine-protein phosphatase F54C8.4 (EC 3.1.3.48). [Source:Uniprot/SWISSPROT;Acc:P34442] BY ORTHOLOGY TO:F54C8.4
16.0293 -12.62 0.00483037 1300 4 2 6 [+] picture button
CBG11387 ENSCBRT00000014012 hypothetical protein LOC449822 [Source:RefSeq_peptide;Acc:NP_001005995]hypothetical protein LOC449822 [Source:RefSeq_peptide;Acc:NP_001005995] BY ORTHOLOGY TO:ENSDART00000056759
16.0581 -16.17 0.00485988 1300 2 2 2 [+] picture button
CBG21662 ENSCBRT00000004601 F38E11.4 [Source:RefSeq_peptide;Acc:NP_501670]F38E11.4 [Source:RefSeq_peptide;Acc:NP_501670] BY ORTHOLOGY TO:F38E11.4
15.9981 -14.33 0.00546458 1300 1 1 1 [+] picture button
CBG07887 ENSCBRT00000004824 Y46G5A.18 [Source:RefSeq_peptide;Acc:NP_496722]Y46G5A.18 [Source:RefSeq_peptide;Acc:NP_496722] BY ORTHOLOGY TO:Y46G5A.18
17.0024 -18.49 0.00565915 1300 6 1 6 [+] picture button
CBG21019 ENSCBRT00000000701 Uncharacterized protein C5orf33. [Source:Uniprot/SPTREMBL;Acc:Q96NM0]Uncharacterized protein C5orf33. [Source:Uniprot/SPTREMBL;Acc:Q96NM0] BY ORTHOLOGY TO:ENST00000282512
16.1292 -16.46 0.00621747 1300 2 1 2 [+] picture button
CBG16168 ENSCBRT00000012589 GLYcosylation related family member (gly-14) [Source:RefSeq_peptide;Acc:NP_497719]GLYcosylation related family member (gly-14) [Source:RefSeq_peptide;Acc:NP_497719] BY ORTHOLOGY TO:M01F1.1
18.2191 -21.18 0.0063379 1300 8 1 7 [+] picture button
CBG12227 ENSCBRT00000013238 fatty acid 2-hydroxylase [Source:RefSeq_peptide;Acc:NP_077282]fatty acid 2-hydroxylase [Source:RefSeq_peptide;Acc:NP_077282] BY ORTHOLOGY TO:ENST00000219368
16.7494 -19.91 0.00650771 1300 4 2 8 [+] picture button
CBG20077 ENSCBRT00000000651 F58G6.7 [Source:RefSeq_peptide;Acc:NP_501714]F58G6.7 [Source:RefSeq_peptide;Acc:NP_501714] BY ORTHOLOGY TO:F58G6.7
15.7704 -17.37 0.00718102 1300 3 1 3 [+] picture button
CBG18446 ENSCBRT00000000994 Tumor necrosis factor receptor superfamily member 25 precursor (WSL-1 protein) (Apoptosis-mediating receptor DR3) (Apoptosis-mediating receptor TRAMP) (Death domain receptor 3) (WSL protein) (Apoptosis- inducing receptor AIR) (Apo-3) (Lymphocyte-associate [Source:Uniprot/SWISSPROT;Acc:Q93038]Tumor necrosis factor receptor superfamily member 25 precursor (WSL-1 protein) (Apoptosis-mediating receptor DR3) (Apoptosis-mediating receptor TRAMP) (Death domain receptor 3) (WSL protein) (Apoptosis- inducing receptor AIR) (Apo-3) (Lymphocyte-associate [Source:Uniprot/SWISSPROT;Acc:Q93038] BY ORTHOLOGY TO:ENSGALT00000021700
15.7625 -13.16 0.00729574 1300 3 1 3 [+] picture button
CBG03754 ENSCBRT00000008619 T05F1.9 [Source:RefSeq_peptide;Acc:NP_492562]T05F1.9 [Source:RefSeq_peptide;Acc:NP_492562] BY ORTHOLOGY TO:T05F1.9
16.488 -19.04 0.00737176 1300 5 1 4 [+] picture button
CBG14269 ENSCBRT00000002700 Tetraspanin-17. [Source:Uniprot/SWISSPROT;Acc:Q11098]Tetraspanin-17. [Source:Uniprot/SWISSPROT;Acc:Q11098] BY ORTHOLOGY TO:C02F12.1
15.8238 -20.61 0.00763955 1300 4 1 5 [+] picture button
CBG17543 ENSCBRT00000002097 K09C8.2 [Source:RefSeq_peptide;Acc:NP_509831]K09C8.2 [Source:RefSeq_peptide;Acc:NP_509831] BY ORTHOLOGY TO:K09C8.2
15.8426 -12.43 0.00764412 1300 8 1 8 [+] picture button
CBG04013 ENSCBRT00000009935 pgp-2 encodes a member of the ABC transporter family with highest similarity to the vertebrate MDR (multidrug resistance) family, and is orthologous to human MDR1 (ABCB1. OMIM:171050, mutated in Crohn disease). PGP-2 is expressed at lower levels during the embryonic stages with higher expression later in development. [Source: WormBase]pgp-2 encodes a member of the ABC transporter family with highest similarity to the vertebrate MDR (multidrug resistance) family, and is orthologous to human MDR1 (ABCB1. OMIM:171050, mutated in Crohn disease). PGP-2 is expressed at lower levels during the embryonic stages with higher expression later in development. [Source: WormBase] BY ORTHOLOGY TO:C34G6.4
15.7776 -13.63 0.00783157 1300 1 1 1 [+] picture button
CBG07725 ENSCBRT00000010686 Dynamin (EC 3.6.5.5). [Source:Uniprot/SWISSPROT;Acc:P39055]Dynamin (EC 3.6.5.5). [Source:Uniprot/SWISSPROT;Acc:P39055] BY ORTHOLOGY TO:C02C6.1b
15.8589 -12.6 0.0085208 1300 2 1 2 [+] picture button
CBG00030 ENSCBRT00000000215 CG11586-PA [Source:RefSeq_peptide;Acc:NP_647881]CG11586-PA [Source:RefSeq_peptide;Acc:NP_647881] BY ORTHOLOGY TO:CG11586-RA
15.7489 -15.61 0.00856808 1300 3 1 4 [+] picture button
CBG21498 ENSCBRT00000003786 Y57G11C.23 [Source:RefSeq_peptide;Acc:NP_502801]Y57G11C.23 [Source:RefSeq_peptide;Acc:NP_502801] BY ORTHOLOGY TO:Y57G11C.23
16.5557 -16.76 0.00872777 1300 5 1 5 [+] picture button
CBG05490 ENSCBRT00000004847 nlp-16 encodes a predicted neuropeptide that does not belong to a multigene family in C. elegans and is not clearly related to well-characterized neuropeptides. the peptide encoded by nlp-16 has been isolated from Ascaris suum. [Source: WormBase]nlp-16 encodes a predicted neuropeptide that does not belong to a multigene family in C. elegans and is not clearly related to well-characterized neuropeptides. the peptide encoded by nlp-16 has been isolated from Ascaris suum. [Source: WormBase] BY ORTHOLOGY TO:T13A10.5a
15.809 -14.95 0.00877596 1300 9 2 12 [+] picture button
CBG08054 ENSCBRT00000003460 C52B11.5 [Source:RefSeq_peptide;Acc:NP_508236]C52B11.5 [Source:RefSeq_peptide;Acc:NP_508236] BY ORTHOLOGY TO:C52B11.5
15.6643 -14.98 0.00886525 1300 3 1 3 [+] picture button
ENSCBRT00000014407 T02G5.1 [Source:RefSeq_peptide;Acc:NP_495465]T02G5.1 [Source:RefSeq_peptide;Acc:NP_495465] BY ORTHOLOGY TO:T02G5.1
15.6572 -11.45 0.00899001 1300 7 1 13 [+] picture button
CBG20681 ENSCBRT00000001458 Y51H1A.1b [Source:RefSeq_peptide;Acc:NP_872047]Y51H1A.1b [Source:RefSeq_peptide;Acc:NP_872047] BY ORTHOLOGY TO:Y51H1A.1b
15.6737 -10.51 0.00900866 1300 1 1 1 [+] picture button
CBG14906 ENSCBRT00000004493 tensin homologue [Source:RefSeq_peptide;Acc:NP_001027625]tensin homologue [Source:RefSeq_peptide;Acc:NP_001027625] BY ORTHOLOGY TO:ENSCINT00000024265
15.7108 -13.63 0.00911992 1300 4 2 6 [+] picture button
CBG23205 ENSCBRT00000012158 F57B7.3 [Source:RefSeq_peptide;Acc:NP_505902]F57B7.3 [Source:RefSeq_peptide;Acc:NP_505902] BY ORTHOLOGY TO:F57B7.3
15.7693 -14.39 0.00931715 1300 4 1 5 [+] picture button
CBG06078 ENSCBRT00000008459 SEC31 homolog B [Source:RefSeq_peptide;Acc:NP_056305]SEC31 homolog B [Source:RefSeq_peptide;Acc:NP_056305] BY ORTHOLOGY TO:SINFRUT00000180169
15.6549 -15.13 0.00979631 1300 3 2 3 [+] picture button
CBG19242 ENSCBRT00000013446 Nuclear Hormone Receptor family member (nhr-36) [Source:RefSeq_peptide;Acc:NP_505398]Nuclear Hormone Receptor family member (nhr-36) [Source:RefSeq_peptide;Acc:NP_505398] BY ORTHOLOGY TO:F07C3.10
16.2444 -18.79 0.0110836 1300 4 2 5 [+] picture button
CBG00979 ENSCBRT00000002194 Plexin-2 precursor. [Source:Uniprot/SWISSPROT;Acc:O45657]Plexin-2 precursor. [Source:Uniprot/SWISSPROT;Acc:O45657] BY ORTHOLOGY TO:K04B12.1
17.6711 -21.68 0.0114773 1300 9 1 20 [+] picture button
CBG17739 ENSCBRT00000000175 C26B2.7 [Source:RefSeq_peptide;Acc:NP_501342]C26B2.7 [Source:RefSeq_peptide;Acc:NP_501342] BY ORTHOLOGY TO:C26B2.7
17.6245 -20.5 0.0120698 1300 6 2 7 [+] picture button
CBG04039 ENSCBRT00000009912 T08G11.2 [Source:RefSeq_peptide;Acc:NP_492402]T08G11.2 [Source:RefSeq_peptide;Acc:NP_492402] BY ORTHOLOGY TO:T08G11.2
17.6195 -21.2 0.0121352 1300 4 1 4 [+] picture button
CBG02405 ENSCBRT00000006594 A receptor tyrosine phosphatase that negatively regulates the FGF receptorsignaling pathway. it localizes to the plasma membrane. [Source: WormBase]A receptor tyrosine phosphatase that negatively regulates the FGF receptorsignaling pathway. it localizes to the plasma membrane. [Source: WormBase] BY ORTHOLOGY TO:F56D1.4b
17.5962 -19.61 0.0124439 1300 3 2 5 [+] picture button
CBG19428 ENSCBRT00000012828 K08H10.6 [Source:RefSeq_peptide;Acc:NP_505572]K08H10.6 [Source:RefSeq_peptide;Acc:NP_505572] BY ORTHOLOGY TO:K08H10.6
17.5028 -22.3 0.0137639 1300 2 1 2 [+] picture button
CBG01827 ENSCBRT00000002902 Replication factor C subunit 3 (Replication factor C 38 kDa subunit) (RFC38) (Activator 1 38 kDa subunit) (A1 38 kDa subunit) (RF-C 38 kDa subunit). [Source:Uniprot/SWISSPROT;Acc:P40938]Replication factor C subunit 3 (Replication factor C 38 kDa subunit) (RFC38) (Activator 1 38 kDa subunit) (A1 38 kDa subunit) (RF-C 38 kDa subunit). [Source:Uniprot/SWISSPROT;Acc:P40938] BY ORTHOLOGY TO:ENSMODT00000012425
17.472 -16.44 0.0142286 1300 4 2 5 [+] picture button
CBG23685 ENSCBRT00000003526 CG6599-PA [Source:RefSeq_peptide;Acc:NP_651560]CG6599-PA [Source:RefSeq_peptide;Acc:NP_651560] BY ORTHOLOGY TO:CG6599-RA
17.4373 -14.41 0.0147698 1300 3 1 3 [+] picture button

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