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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-83

207 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG23585 ENSCBRT00000000946 conserved hypothetical proteinconserved hypothetical protein BY ORTHOLOGY TO:AAEL008852-RA
16.3712 -16.37 9.8281e-05 1300 5 1 3 [+] picture button
CBG00579 ENSCBRT00000003119 W01C9.1 [Source:RefSeq_peptide;Acc:NP_495802]W01C9.1 [Source:RefSeq_peptide;Acc:NP_495802] BY ORTHOLOGY TO:W01C9.1
16.7138 -16.47 0.000112465 1300 3 2 4 [+] picture button
CBG01473 ENSCBRT00000001886 grd-5 encodes a hedgehog-like protein, with an N-terminal signal sequence and a C-terminal Ground domain. GRD-5 is expressed in adult anterior and posterior seam cells, overlapping GRD-3 expression. the Ground domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins. GRD-5 is weakly required for normal molting. GRD-5 is also required for normal adult alae formation, growth to full size, and locomotion. all of these requirements may reflect common defects in cholesterol-dependent hedgehog-like signalling or in vesicle trafficking. [Source: WormBase]grd-5 encodes a hedgehog-like protein, with an N-terminal signal sequence and a C-terminal Ground domain. GRD-5 is expressed in adult anterior and posterior seam cells, overlapping GRD-3 expression. the Ground domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins. GRD-5 is weakly required for normal molting. GRD-5 is also required for normal adult alae formation, growth to full size, and locomotion. all of these requirements may reflect common defects in cholesterol-dependent hedgehog-like signalling or in vesicle trafficking. [Source: WormBase] BY ORTHOLOGY TO:F41E6.2
15.3761 -14.38 0.000139412 1300 6 1 8 [+] picture button
ENSCBRT00000004179 T07D1.3 [Source:RefSeq_peptide;Acc:NP_508445]T07D1.3 [Source:RefSeq_peptide;Acc:NP_508445] BY ORTHOLOGY TO:T07D1.3
16.7082 -17.93 0.000218744 1300 4 1 5 [+] picture button
CBG06097 ENSCBRT00000008438 Cysteine protease ATG4C (EC 3.4.22.-) (Autophagy-related protein 4 homolog C) (Autophagin-3) (Autophagy-related cysteine endopeptidase 3) (AUT-like 3 cysteine endopeptidase). [Source:Uniprot/SWISSPROT;Acc:Q96DT6]Cysteine protease ATG4C (EC 3.4.22.-) (Autophagy-related protein 4 homolog C) (Autophagin-3) (Autophagy-related cysteine endopeptidase 3) (AUT-like 3 cysteine endopeptidase). [Source:Uniprot/SWISSPROT;Acc:Q96DT6] BY ORTHOLOGY TO:ENST00000317868
16.2959 -16.35 0.000226826 1300 3 1 3 [+] picture button
CBG01087 ENSCBRT00000005247 Uncharacterized protein C18orf8 (Colon cancer-associated protein Mic1) (Mic-1). [Source:Uniprot/SWISSPROT;Acc:Q96DM3]Uncharacterized protein C18orf8 (Colon cancer-associated protein Mic1) (Mic-1). [Source:Uniprot/SWISSPROT;Acc:Q96DM3] BY ORTHOLOGY TO:SINFRUT00000176703
16.1329 -15.61 0.000312188 1300 2 1 3 [+] picture button
CBG08098 ENSCBRT00000003577 ZC13.1a [Source:RefSeq_peptide;Acc:NP_001024969]ZC13.1a [Source:RefSeq_peptide;Acc:NP_001024969] BY ORTHOLOGY TO:ZC13.1b
16.0897 -21.97 0.00036649 1300 3 1 4 [+] picture button
CBG14241 ENSCBRT00000002683 C18B2.3 [Source:RefSeq_peptide;Acc:NP_508619]C18B2.3 [Source:RefSeq_peptide;Acc:NP_508619] BY ORTHOLOGY TO:C18B2.3
16.0314 -20.11 0.000437694 1300 5 1 5 [+] picture button
CBG09148 ENSCBRT00000008903 The cup-5 gene encodes an ortholog of the human mucolipin-1 gene, and is required for the normal, negative regulation of endocytotic uptake of markers from pseudocoelomic fluid. [Source: WormBase]The cup-5 gene encodes an ortholog of the human mucolipin-1 gene, and is required for the normal, negative regulation of endocytotic uptake of markers from pseudocoelomic fluid. [Source: WormBase] BY ORTHOLOGY TO:R13A5.1d
15.9924 -21.5 0.000441663 1300 2 2 3 [+] picture button
CBG19032 ENSCBRT00000014067 T15B7.16 [Source:RefSeq_peptide;Acc:NP_504741]T15B7.16 [Source:RefSeq_peptide;Acc:NP_504741] BY ORTHOLOGY TO:T15B7.16
15.9055 -16.2 0.000670095 1300 3 2 5 [+] picture button
CBG15954 ENSCBRT00000014232 T23C6.5 [Source:RefSeq_peptide;Acc:NP_510779]T23C6.5 [Source:RefSeq_peptide;Acc:NP_510779] BY ORTHOLOGY TO:T23C6.5
16.0141 -21.24 0.000749544 1300 4 2 6 [+] picture button
CBG05639 ENSCBRT00000005438 conserved hypothetical proteinconserved hypothetical protein BY ORTHOLOGY TO:AAEL007910-RA
15.6997 -15.5 0.000818658 1300 3 1 5 [+] picture button
CBG12413 ENSCBRT00000013156 F32H2.7 [Source:RefSeq_peptide;Acc:NP_492420]F32H2.7 [Source:RefSeq_peptide;Acc:NP_492420] BY ORTHOLOGY TO:F32H2.7
15.9826 -20.08 0.000884196 1300 8 2 10 [+] picture button
CBG06891 ENSCBRT00000007354 Integrin alpha pat-2 precursor. [Source:Uniprot/SWISSPROT;Acc:P34446]Integrin alpha pat-2 precursor. [Source:Uniprot/SWISSPROT;Acc:P34446] BY ORTHOLOGY TO:F54F2.1
15.5856 -14.59 0.00101471 1300 7 2 9 [+] picture button
CBG22549 ENSCBRT00000006041 Beta-parvin (Affixin). [Source:Uniprot/SWISSPROT;Acc:Q9HBI1]Beta-parvin (Affixin). [Source:Uniprot/SWISSPROT;Acc:Q9HBI1] BY ORTHOLOGY TO:ENSGACT00000005125
15.5223 -12.04 0.00102357 1300 1 1 2 [+] picture button
CBG18587 ENSCBRT00000011192 Serpentine Receptor, class H family member (srh-276) [Source:RefSeq_peptide;Acc:NP_506863]Serpentine Receptor, class H family member (srh-276) [Source:RefSeq_peptide;Acc:NP_506863] BY ORTHOLOGY TO:F21A3.1
15.4413 -18.23 0.00119647 1300 3 1 3 [+] picture button
CBG00928 ENSCBRT00000003931 conserved hypothetical proteinconserved hypothetical protein BY ORTHOLOGY TO:AAEL009926-RA
15.3134 -16.02 0.0014043 1300 4 1 9 [+] picture button
CBG01494 ENSCBRT00000001871 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) (Glutamine- dependent asparagine synthetase) (Cell cycle control protein TS11). [Source:Uniprot/SWISSPROT;Acc:P08243]Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) (Glutamine- dependent asparagine synthetase) (Cell cycle control protein TS11). [Source:Uniprot/SWISSPROT;Acc:P08243] BY ORTHOLOGY TO:ENST00000175506
15.4582 -14.35 0.0016034 1300 3 2 3 [+] picture button
CBG20496 ENSCBRT00000003903 F28B3.5a [Source:RefSeq_peptide;Acc:NP_491478]F28B3.5a [Source:RefSeq_peptide;Acc:NP_491478] BY ORTHOLOGY TO:F28B3.5a
14.9106 -13.46 0.00167383 1300 4 1 5 [+] picture button
ENSCBRT00000003758 ZK1193.4 [Source:RefSeq_peptide;Acc:NP_508101]ZK1193.4 [Source:RefSeq_peptide;Acc:NP_508101] BY ORTHOLOGY TO:ZK1193.4
18.3215 -26 0.00202686 1300 3 1 4 [+] picture button
CBG01914 ENSCBRT00000005756 R07B1.9 [Source:RefSeq_peptide;Acc:NP_509657]R07B1.9 [Source:RefSeq_peptide;Acc:NP_509657] BY ORTHOLOGY TO:R07B1.9
15.5695 -13.04 0.00210583 1300 1 2 1 [+] picture button
CBG06264 ENSCBRT00000007066 C42C1.3 [Source:RefSeq_peptide;Acc:NP_502331]C42C1.3 [Source:RefSeq_peptide;Acc:NP_502331] BY ORTHOLOGY TO:C42C1.3
15.3567 -13.58 0.00237372 1300 5 2 5 [+] picture button
CBG01571 ENSCBRT00000005477 try-2 encodes a homolog of human TRYP1 and ELA2. mutation of human TRYP1 or ELA2 leads, respectively, to hereditary pancreatitis (OMIM:276000) or cyclic haematopoiesis (OMIM:162800). [Source: WormBase]try-2 encodes a homolog of human TRYP1 and ELA2. mutation of human TRYP1 or ELA2 leads, respectively, to hereditary pancreatitis (OMIM:276000) or cyclic haematopoiesis (OMIM:162800). [Source: WormBase] BY ORTHOLOGY TO:C07G1.1
15.1055 -14.09 0.00241727 1300 2 1 1 [+] picture button
CBG04200 ENSCBRT00000007606 GPI ethanolamine phosphate transferase 1 (EC 2.-.-.-) (Phosphatidylinositol-glycan biosynthesis class N protein) (PIG-N) (MCD4 homolog). [Source:Uniprot/SWISSPROT;Acc:O95427]GPI ethanolamine phosphate transferase 1 (EC 2.-.-.-) (Phosphatidylinositol-glycan biosynthesis class N protein) (PIG-N) (MCD4 homolog). [Source:Uniprot/SWISSPROT;Acc:O95427] BY ORTHOLOGY TO:ENSGACT00000003180
15.7801 -14.48 0.00253952 1300 5 1 6 [+] picture button
CBG10939 ENSCBRT00000001244 inx-1 encodes a predicted member of the innexin family. expressed in 4-6 anterior neurons. [Source: WormBase]inx-1 encodes a predicted member of the innexin family. expressed in 4-6 anterior neurons. [Source: WormBase] BY ORTHOLOGY TO:C16E9.4a
14.7733 -11.4 0.00260637 1300 6 2 11 [+] picture button
CBG20858 ENSCBRT00000001285 C01G12.1 [Source:RefSeq_peptide;Acc:NP_497028]C01G12.1 [Source:RefSeq_peptide;Acc:NP_497028] BY ORTHOLOGY TO:C01G12.1
15.0965 -12.82 0.00288603 1300 7 1 12 [+] picture button
CBG00574 ENSCBRT00000003108 The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). [Source: WormBase]The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). [Source: WormBase] BY ORTHOLOGY TO:W01C9.3
15.1 -16.38 0.0029625 1300 4 2 4 [+] picture button
CBG09645 ENSCBRT00000005803 T21C9.1 [Source:RefSeq_peptide;Acc:NP_505712]T21C9.1 [Source:RefSeq_peptide;Acc:NP_505712] BY ORTHOLOGY TO:T21C9.1
15.0955 -14.07 0.00310807 1300 2 2 2 [+] picture button
CBG22761 ENSCBRT00000004243 The ced-8 gene encodes a homolog of the human putative membrane transporter XK. ced-8 is required for apoptosis to occur with normal speed during embryonic development. [Source: WormBase]The ced-8 gene encodes a homolog of the human putative membrane transporter XK. ced-8 is required for apoptosis to occur with normal speed during embryonic development. [Source: WormBase] BY ORTHOLOGY TO:F08F1.5
14.948 -12.2 0.00324866 1300 7 1 8 [+] picture button
CBG05890 ENSCBRT00000008979 F55G1.13 [Source:RefSeq_peptide;Acc:NP_501207]F55G1.13 [Source:RefSeq_peptide;Acc:NP_501207] BY ORTHOLOGY TO:F55G1.13
15.1146 -14.02 0.00337698 1300 4 1 5 [+] picture button
CBG09409 ENSCBRT00000006417 Guanine nucleotide-binding protein alpha-17 subunit (Odorant response abnormal protein 3). [Source:Uniprot/SWISSPROT;Acc:Q18434]Guanine nucleotide-binding protein alpha-17 subunit (Odorant response abnormal protein 3). [Source:Uniprot/SWISSPROT;Acc:Q18434] BY ORTHOLOGY TO:C34D1.3
15.1157 -16.65 0.00341315 1300 2 1 2 [+] picture button
CBG06098 ENSCBRT00000008434 hypothetical protein LOC436703 [Source:RefSeq_peptide;Acc:NP_001002430]hypothetical protein LOC436703 [Source:RefSeq_peptide;Acc:NP_001002430] BY ORTHOLOGY TO:ENSDART00000059508
14.7157 -16.22 0.0034759 1300 7 1 6 [+] picture button
CBG12392 ENSCBRT00000013144 hypothetical protein LOC641580 [Source:RefSeq_peptide;Acc:NP_001032667]hypothetical protein LOC641580 [Source:RefSeq_peptide;Acc:NP_001032667] BY ORTHOLOGY TO:ENSDART00000053860
14.8688 -16.08 0.00355054 1300 3 1 2 [+] picture button
ENSCBRT00000009463 ZK892.5 [Source:RefSeq_peptide;Acc:NP_496164]ZK892.5 [Source:RefSeq_peptide;Acc:NP_496164] BY ORTHOLOGY TO:ZK892.5
14.7245 -14.61 0.00409445 1300 3 1 4 [+] picture button
CBG08128 ENSCBRT00000003714 p53-induced protein [Source:RefSeq_peptide;Acc:NP_006025]p53-induced protein [Source:RefSeq_peptide;Acc:NP_006025] BY ORTHOLOGY TO:ENSOANT00000005083
17.0546 -21.88 0.00416031 1300 4 2 4 [+] picture button
CBG19377 ENSCBRT00000013561 Serpentine Receptor, class U family member (sru-38) [Source:RefSeq_peptide;Acc:NP_505538]Serpentine Receptor, class U family member (sru-38) [Source:RefSeq_peptide;Acc:NP_505538] BY ORTHOLOGY TO:R07B5.4
17.2495 -23.05 0.00416031 1300 4 1 4 [+] picture button
CBG02030 ENSCBRT00000005888 F53B3.5 encodes a claudin homolog that may regulate ion channels. F53B3.5 is distantly similar to mammalian voltage-dependent calcium channel gamma subunits that are known or suspected to prevent epilepsy in vivo (e.g., stargazin. MGI:1316660). F53B3.5 has no obvious function in mass RNAi assays. claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water. [Source: WormBase]F53B3.5 encodes a claudin homolog that may regulate ion channels. F53B3.5 is distantly similar to mammalian voltage-dependent calcium channel gamma subunits that are known or suspected to prevent epilepsy in vivo (e.g., stargazin. MGI:1316660). F53B3.5 has no obvious function in mass RNAi assays. claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water. [Source: WormBase] BY ORTHOLOGY TO:F53B3.5
14.8526 -16.57 0.00419295 1300 2 2 3 [+] picture button
CBG18318 ENSCBRT00000001629 exostoses (multiple)-like 3 [Source:RefSeq_peptide;Acc:NP_001008402]exostoses (multiple)-like 3 [Source:RefSeq_peptide;Acc:NP_001008402] BY ORTHOLOGY TO:ENSDART00000039499
14.8299 -14.53 0.00425042 1300 3 2 4 [+] picture button
CBG18375 ENSCBRT00000001576 F43D9.1 [Source:RefSeq_peptide;Acc:NP_499313]F43D9.1 [Source:RefSeq_peptide;Acc:NP_499313] BY ORTHOLOGY TO:F43D9.1
14.8676 -16.29 0.00434436 1300 4 2 6 [+] picture button
CBG05891 ENSCBRT00000008980 F55G1.15 [Source:RefSeq_peptide;Acc:NP_501209]F55G1.15 [Source:RefSeq_peptide;Acc:NP_501209] BY ORTHOLOGY TO:F55G1.15
15.5719 -14.82 0.00436865 1300 9 1 8 [+] picture button
CBG19873 ENSCBRT00000002419 C45E5.4 [Source:RefSeq_peptide;Acc:NP_500854]C45E5.4 [Source:RefSeq_peptide;Acc:NP_500854] BY ORTHOLOGY TO:C45E5.4
14.8073 -13.06 0.00440163 1300 2 1 2 [+] picture button
CBG11301 ENSCBRT00000014401 Seven TM Receptor family member (str-135) [Source:RefSeq_peptide;Acc:NP_505138]Seven TM Receptor family member (str-135) [Source:RefSeq_peptide;Acc:NP_505138] BY ORTHOLOGY TO:F21F8.10
14.7157 -13.06 0.00472248 1300 6 2 8 [+] picture button
CBG05702 ENSCBRT00000009208 H20E11.3b [Source:RefSeq_peptide;Acc:NP_001023262]H20E11.3b [Source:RefSeq_peptide;Acc:NP_001023262] BY ORTHOLOGY TO:H20E11.3b
17.347 -18.63 0.00533565 1300 3 1 5 [+] picture button
CBG01002 ENSCBRT00000002147 Putative acid phosphatase C05C10.1 (EC 3.1.3.2). [Source:Uniprot/SWISSPROT;Acc:Q09448]Putative acid phosphatase C05C10.1 (EC 3.1.3.2). [Source:Uniprot/SWISSPROT;Acc:Q09448] BY ORTHOLOGY TO:C05C10.1
17.1728 -17.91 0.00634073 1300 6 1 7 [+] picture button
CBG16807 ENSCBRT00000012878 Y76B12C.1 [Source:RefSeq_peptide;Acc:NP_500158]Y76B12C.1 [Source:RefSeq_peptide;Acc:NP_500158] BY ORTHOLOGY TO:Y76B12C.1
17.1508 -16.88 0.00648028 1300 2 1 3 [+] picture button
CBG19731 ENSCBRT00000000333 Putative serine/threonine-protein kinase K06H7.1 (EC 2.7.11.1). [Source:Uniprot/SWISSPROT;Acc:P34516]Putative serine/threonine-protein kinase K06H7.1 (EC 2.7.11.1). [Source:Uniprot/SWISSPROT;Acc:P34516] BY ORTHOLOGY TO:K06H7.8
14.5295 -17.87 0.0066516 1300 5 1 5 [+] picture button
CBG14558 ENSCBRT00000003362 tetraspanin, putativetetraspanin, putative BY ORTHOLOGY TO:AAEL004147-RA
14.7458 -13.97 0.00697089 1300 2 2 2 [+] picture button
CBG00033 ENSCBRT00000000218 metaxinmetaxin BY ORTHOLOGY TO:AAEL003344-RA
17.0606 -21.72 0.00708513 1300 1 1 2 [+] picture button
CBG09852 ENSCBRT00000007994 Y54F10AM.6 [Source:RefSeq_peptide;Acc:NP_497571]Y54F10AM.6 [Source:RefSeq_peptide;Acc:NP_497571] BY ORTHOLOGY TO:Y54F10AM.6
17.0546 -22.33 0.00712764 1300 6 1 6 [+] picture button
CBG01532 ENSCBRT00000001904 F54E2.5 [Source:RefSeq_peptide;Acc:NP_503762]F54E2.5 [Source:RefSeq_peptide;Acc:NP_503762] BY ORTHOLOGY TO:F54E2.5
15.3004 -18.44 0.00720038 1300 2 1 2 [+] picture button

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