spacer

Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-80

155 hits found.


Page 1 of 4
1 2 3 4 next >>

Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
picture button picture button picture button picture button picture button picture button picture button picture button picture button picture button
CBG00413 ENSCBRT00000001963 C06A12.5 [Source:RefSeq_peptide;Acc:NP_503109]C06A12.5 [Source:RefSeq_peptide;Acc:NP_503109] BY ORTHOLOGY TO:C06A12.5
16.5929 -21.25 0.000964261 1300 3 1 5 [+] picture button
CBG09407 ENSCBRT00000006412 C34D1.4 [Source:RefSeq_peptide;Acc:NP_506291]C34D1.4 [Source:RefSeq_peptide;Acc:NP_506291] BY ORTHOLOGY TO:C34D1.4
16.6899 -18.25 0.000996367 1300 2 1 3 [+] picture button
CBG08644 ENSCBRT00000002960 Serpentine Receptor, class R family member (srr-6) [Source:RefSeq_peptide;Acc:NP_504346]Serpentine Receptor, class R family member (srr-6) [Source:RefSeq_peptide;Acc:NP_504346] BY ORTHOLOGY TO:C13D9.1
16.6593 -15.34 0.00119857 1300 4 1 6 [+] picture button
CBG00359 ENSCBRT00000002001 FMRF-Like Peptide family member (flp-17) [Source:RefSeq_peptide;Acc:NP_503051]FMRF-Like Peptide family member (flp-17) [Source:RefSeq_peptide;Acc:NP_503051] BY ORTHOLOGY TO:C52D10.11
16.1283 -20.26 0.00131181 1300 3 1 4 [+] picture button
CBG02522 ENSCBRT00000006469 H41C03.2 [Source:RefSeq_peptide;Acc:NP_495167]H41C03.2 [Source:RefSeq_peptide;Acc:NP_495167] BY ORTHOLOGY TO:H41C03.2
16.0421 -15.63 0.00157303 1300 4 1 4 [+] picture button
CBG11881 ENSCBRT00000009324 C26C6.7 [Source:RefSeq_peptide;Acc:NP_492107]C26C6.7 [Source:RefSeq_peptide;Acc:NP_492107] BY ORTHOLOGY TO:C26C6.7
16.8928 -15.15 0.00167881 1300 5 1 10 [+] picture button
CBG23116 ENSCBRT00000012027 C06H2.4 is orthologous to the human gene THIAMINE TRANSPORTER 1 (SLC19A2. OMIM:603941), which when mutated leads to disease. [Source: WormBase]C06H2.4 is orthologous to the human gene THIAMINE TRANSPORTER 1 (SLC19A2. OMIM:603941), which when mutated leads to disease. [Source: WormBase] BY ORTHOLOGY TO:C06H2.4
16.3338 -20.26 0.00179692 1300 4 2 6 [+] picture button
CBG09098 ENSCBRT00000008550 Putative G-protein coupled receptor B0244.6. [Source:Uniprot/SWISSPROT;Acc:Q09965]Putative G-protein coupled receptor B0244.6. [Source:Uniprot/SWISSPROT;Acc:Q09965] BY ORTHOLOGY TO:B0244.6
16.2329 -18.29 0.00194349 1300 4 1 4 [+] picture button
CBG09229 ENSCBRT00000001841 toh-1 encodes an astacin-like metalloprotease. TOH-1 is predicted to function as a secreted protease. experiments that specifically assessed toh-1's role in molting indicate that toh-1(RNAi) causes no abnormal phenotypes. [Source: WormBase]toh-1 encodes an astacin-like metalloprotease. TOH-1 is predicted to function as a secreted protease. experiments that specifically assessed toh-1's role in molting indicate that toh-1(RNAi) causes no abnormal phenotypes. [Source: WormBase] BY ORTHOLOGY TO:T24A11.3
16.4111 -22.81 0.00195665 1300 5 2 14 [+] picture button
CBG21018 ENSCBRT00000000699 Inositol-pentakisphosphate 2-kinase (EC 2.7.1.158) (Inositol- 1,3,4,5,6-pentakisphosphate 2-kinase) (Ins(1,3,4,5,6)P5 2-kinase) (InsP5 2-kinase) (IPK1 homolog). [Source:Uniprot/SWISSPROT;Acc:Q9H8X2]Inositol-pentakisphosphate 2-kinase (EC 2.7.1.158) (Inositol- 1,3,4,5,6-pentakisphosphate 2-kinase) (Ins(1,3,4,5,6)P5 2-kinase) (InsP5 2-kinase) (IPK1 homolog). [Source:Uniprot/SWISSPROT;Acc:Q9H8X2] BY ORTHOLOGY TO:SINFRUT00000131558
16.4174 -15.23 0.0020216 1300 4 2 6 [+] picture button
CBG02849 ENSCBRT00000006228 Nup170 CG6743-PA [Source:RefSeq_peptide;Acc:NP_609446]Nup170 CG6743-PA [Source:RefSeq_peptide;Acc:NP_609446] BY ORTHOLOGY TO:CG6743-RA
16.5929 -19.36 0.00205887 1300 6 2 5 [+] picture button
CBG14530 ENSCBRT00000003446 F55D10.4 [Source:RefSeq_peptide;Acc:NP_508809]F55D10.4 [Source:RefSeq_peptide;Acc:NP_508809] BY ORTHOLOGY TO:F55D10.4
16.2157 -15.24 0.00214685 1300 5 1 5 [+] picture button
CBG04494 ENSCBRT00000008817 F59F5.7 [Source:RefSeq_peptide;Acc:NP_509769]F59F5.7 [Source:RefSeq_peptide;Acc:NP_509769] BY ORTHOLOGY TO:F59F5.7
16.2145 -17.92 0.00215236 1300 3 1 5 [+] picture button
CBG14528 ENSCBRT00000003449 gliotactingliotactin BY ORTHOLOGY TO:AAEL009055-RA
16.4099 -17.63 0.00217461 1300 2 1 2 [+] picture button
CBG15435 ENSCBRT00000010757 Probable G-protein coupled receptor K01A12.3. [Source:Uniprot/SWISSPROT;Acc:Q10042]Probable G-protein coupled receptor K01A12.3. [Source:Uniprot/SWISSPROT;Acc:Q10042] BY ORTHOLOGY TO:K01A12.3
16.2145 -18.08 0.00225105 1300 5 2 9 [+] picture button
CBG11504 ENSCBRT00000013825 T01D3.3b [Source:RefSeq_peptide;Acc:NP_506389]T01D3.3b [Source:RefSeq_peptide;Acc:NP_506389] BY ORTHOLOGY TO:T01D3.3b
16.2048 -18.48 0.00232972 1300 3 2 5 [+] picture button
CBG05075 ENSCBRT00000010270 Putative sarcosine oxidase (EC 1.5.3.1). [Source:Uniprot/SWISSPROT;Acc:Q18006]Putative sarcosine oxidase (EC 1.5.3.1). [Source:Uniprot/SWISSPROT;Acc:Q18006] BY ORTHOLOGY TO:C15B12.1
16.8264 -17.06 0.0023325 1300 4 1 4 [+] picture button
CBG03189 ENSCBRT00000006884 Zinc metalloproteinase nas-25 precursor (EC 3.4.24.21) (Nematode astacin 25). [Source:Uniprot/SWISSPROT;Acc:Q20459]Zinc metalloproteinase nas-25 precursor (EC 3.4.24.21) (Nematode astacin 25). [Source:Uniprot/SWISSPROT;Acc:Q20459] BY ORTHOLOGY TO:F46C5.3
16.2977 -12.8 0.00253115 1300 8 2 8 [+] picture button
CBG10092 ENSCBRT00000007244 Probable tyrosine-protein phosphatase F54C8.4 (EC 3.1.3.48). [Source:Uniprot/SWISSPROT;Acc:P34442]Probable tyrosine-protein phosphatase F54C8.4 (EC 3.1.3.48). [Source:Uniprot/SWISSPROT;Acc:P34442] BY ORTHOLOGY TO:F54C8.4
16.1934 -16.7 0.00258999 1300 4 2 6 [+] picture button
CBG19097 ENSCBRT00000013920 Probable cleavage and polyadenylation specificity factor subunit 2 (Cleavage and polyadenylation specificity factor 100 kDa subunit) (CPSF 100 kDa subunit). [Source:Uniprot/SWISSPROT;Acc:O17403]Probable cleavage and polyadenylation specificity factor subunit 2 (Cleavage and polyadenylation specificity factor 100 kDa subunit) (CPSF 100 kDa subunit). [Source:Uniprot/SWISSPROT;Acc:O17403] BY ORTHOLOGY TO:F09G2.4
16.132 -15.15 0.00267943 1300 1 1 3 [+] picture button
CBG04000 ENSCBRT00000009947 C41D11.5 [Source:RefSeq_peptide;Acc:NP_491373]C41D11.5 [Source:RefSeq_peptide;Acc:NP_491373] BY ORTHOLOGY TO:C41D11.5
16.2145 -17.57 0.00281188 1300 4 1 5 [+] picture button
CBG23009 ENSCBRT00000008843 CG1504-PA [Source:RefSeq_peptide;Acc:NP_608382]CG1504-PA [Source:RefSeq_peptide;Acc:NP_608382] BY ORTHOLOGY TO:CG1504-RA
16.2169 -15.98 0.00307957 1300 7 1 9 [+] picture button
CBG18251 ENSCBRT00000001695 TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:RefSeq_peptide;Acc:NP_001037860]TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:RefSeq_peptide;Acc:NP_001037860] BY ORTHOLOGY TO:ENSDART00000085667
16.1381 -15.87 0.0031437 1300 4 1 3 [+] picture button
CBG02631 ENSCBRT00000007515 C32D5.7 [Source:RefSeq_peptide;Acc:NP_495274]C32D5.7 [Source:RefSeq_peptide;Acc:NP_495274] BY ORTHOLOGY TO:C32D5.7
16.3092 -17.43 0.00333399 1300 2 1 4 [+] picture button
CBG01940 ENSCBRT00000005771 mkk-4 encodes a MAP (mitogen-activated protein) kinase kinase that is a member of the MKK4 family of MAPKK's. MKK-4 activity is required in presynaptic neurons, in a dose-dependent manner, for normal presynaptic development and morphology. in regulating presynaptic organization, MKK-4 acts upstream of PMK-3/MAPK and downstream of DLK-1/MAPKKK, whose levels are negatively regulated by the RPM-1 ubiquitin ligase. a functional MKK-4::GFP fusion protein is expressed in the cytoplasm of many neurons as well as in other cell types, including the pharyngeal muscles. [Source: WormBase]mkk-4 encodes a MAP (mitogen-activated protein) kinase kinase that is a member of the MKK4 family of MAPKK's. MKK-4 activity is required in presynaptic neurons, in a dose-dependent manner, for normal presynaptic development and morphology. in regulating presynaptic organization, MKK-4 acts upstream of PMK-3/MAPK and downstream of DLK-1/MAPKKK, whose levels are negatively regulated by the RPM-1 ubiquitin ligase. a functional MKK-4::GFP fusion protein is expressed in the cytoplasm of many neurons as well as in other cell types, including the pharyngeal muscles. [Source: WormBase] BY ORTHOLOGY TO:F42G10.2
16.1829 -19 0.00391062 1300 4 2 5 [+] picture button
ENSCBRT00000004215 C47D2.1 [Source:RefSeq_peptide;Acc:NP_509385]C47D2.1 [Source:RefSeq_peptide;Acc:NP_509385] BY ORTHOLOGY TO:C47D2.1
16.811 -17.49 0.0039494 1300 3 1 7 [+] picture button
CBG01651 ENSCBRT00000005533 daf-1 encodes a TGF-beta type I receptor homolog required, in association with the TGF beta-like type II receptor DAF-4, for the regulation of dauer formation by environmental signals through the ASI chemosensory neuron. DAF-1 is bound by BRA-1 and has an intracellular serine-threonine kinase domain. mutations in daf-1 result in constitutive formation of dauer larvae even in abundant food. [Source: WormBase]daf-1 encodes a TGF-beta type I receptor homolog required, in association with the TGF beta-like type II receptor DAF-4, for the regulation of dauer formation by environmental signals through the ASI chemosensory neuron. DAF-1 is bound by BRA-1 and has an intracellular serine-threonine kinase domain. mutations in daf-1 result in constitutive formation of dauer larvae even in abundant food. [Source: WormBase] BY ORTHOLOGY TO:F29C4.1a
15.9895 -17.84 0.00396907 1300 5 2 5 [+] picture button
CBG17652 ENSCBRT00000002201 R102.4b [Source:RefSeq_peptide;Acc:NP_501979]R102.4b [Source:RefSeq_peptide;Acc:NP_501979] BY ORTHOLOGY TO:R102.4a
15.9102 -18.05 0.00405842 1300 4 1 3 [+] picture button
CBG03053 ENSCBRT00000007013 C14A4.12a [Source:RefSeq_peptide;Acc:NP_001021948]C14A4.12a [Source:RefSeq_peptide;Acc:NP_001021948] BY ORTHOLOGY TO:C14A4.12a
16.4564 -21.36 0.00410313 1300 4 2 6 [+] picture button
CBG15954 ENSCBRT00000014232 T23C6.5 [Source:RefSeq_peptide;Acc:NP_510779]T23C6.5 [Source:RefSeq_peptide;Acc:NP_510779] BY ORTHOLOGY TO:T23C6.5
15.9449 -17.49 0.00416035 1300 4 2 6 [+] picture button
CBG19563 ENSCBRT00000001776 sup-9 encodes one of 44 C. elegans TWK (two-P domain K+) potassium channel subunits that contain two pore-forming domains and four transmembrane domains. sup-9 was originally defined by gain-of-function mutations that result in defects in pharyngeal, body-wall, egg-laying, and enteric muscle activation. loss of sup-9 function via reversion or RNA-mediated interference (RNAi) does not result in any abnormalities suggesting that SUP-9 may function redundantly with other TWK channels. SUP-9 is expressed in neurons and muscle. [Source: WormBase]sup-9 encodes one of 44 C. elegans TWK (two-P domain K+) potassium channel subunits that contain two pore-forming domains and four transmembrane domains. sup-9 was originally defined by gain-of-function mutations that result in defects in pharyngeal, body-wall, egg-laying, and enteric muscle activation. loss of sup-9 function via reversion or RNA-mediated interference (RNAi) does not result in any abnormalities suggesting that SUP-9 may function redundantly with other TWK channels. SUP-9 is expressed in neurons and muscle. [Source: WormBase] BY ORTHOLOGY TO:F34D6.3
16.0435 -18.33 0.00431743 1300 2 1 1 [+] picture button
CBG09827 ENSCBRT00000008017 Y71H2B.3 [Source:RefSeq_peptide;Acc:NP_497591]Y71H2B.3 [Source:RefSeq_peptide;Acc:NP_497591] BY ORTHOLOGY TO:Y71H2B.3
16.1077 -19.13 0.00457732 1300 3 1 2 [+] picture button
CBG09281 ENSCBRT00000006292 M03F8.1 [Source:RefSeq_peptide;Acc:NP_504549]M03F8.1 [Source:RefSeq_peptide;Acc:NP_504549] BY ORTHOLOGY TO:M03F8.1
15.8684 -22.25 0.00484778 1300 1 2 1 [+] picture button
CBG19421 ENSCBRT00000012815 Stonin-2 (Stoned B). [Source:Uniprot/SWISSPROT;Acc:Q8WXE9]Stonin-2 (Stoned B). [Source:Uniprot/SWISSPROT;Acc:Q8WXE9] BY ORTHOLOGY TO:ENSMMUT00000031123
15.855 -18.45 0.00490009 1300 2 2 5 [+] picture button
CBG00571 ENSCBRT00000003103 W01C9.5 [Source:RefSeq_peptide;Acc:NP_495806]W01C9.5 [Source:RefSeq_peptide;Acc:NP_495806] BY ORTHOLOGY TO:W01C9.5
15.8166 -20.1 0.00491965 1300 3 1 5 [+] picture button
CBG21290 ENSCBRT00000000750 inx-18 encodes a predicted member of the innexin family. [Source: WormBase]inx-18 encodes a predicted member of the innexin family. [Source: WormBase] BY ORTHOLOGY TO:C18H7.2a
15.8261 -19.91 0.00504743 1300 2 2 2 [+] picture button
CBG08129 ENSCBRT00000003716 T19D7.7 [Source:RefSeq_peptide;Acc:NP_508140]T19D7.7 [Source:RefSeq_peptide;Acc:NP_508140] BY ORTHOLOGY TO:T19D7.7
15.934 -16.48 0.00552491 1300 3 1 3 [+] picture button
CBG07027 ENSCBRT00000012402 Nipped-B-like protein (Delangin) (SCC2 homolog). [Source:Uniprot/SWISSPROT;Acc:Q6KC79]Nipped-B-like protein (Delangin) (SCC2 homolog). [Source:Uniprot/SWISSPROT;Acc:Q6KC79] BY ORTHOLOGY TO:ENSPTRT00000031188
16.477 -24.54 0.0055582 1300 4 1 5 [+] picture button
CBG13271 ENSCBRT00000001064 Y66D12A.17 encodes a paralog of GFI-3 that, like GFI-3, is distantly similar to the human anaphase promoting complex subunit APC5. [Source: WormBase]Y66D12A.17 encodes a paralog of GFI-3 that, like GFI-3, is distantly similar to the human anaphase promoting complex subunit APC5. [Source: WormBase] BY ORTHOLOGY TO:Y66D12A.17
15.7423 -23.49 0.00572634 1300 9 2 11 [+] picture button
CBG00124 ENSCBRT00000001531 T18D3.1 [Source:RefSeq_peptide;Acc:NP_510088]T18D3.1 [Source:RefSeq_peptide;Acc:NP_510088] BY ORTHOLOGY TO:T18D3.1
15.7409 -13.44 0.0057426 1300 2 1 2 [+] picture button
CBG00759 ENSCBRT00000004038 E3 ubiquitin-protein ligase rpm-1 (EC 6.3.2.-) (Pam/highwire/rpm-1 protein) (Regulator of presynaptic morphology protein 1) (Synapse defective protein 3). [Source:Uniprot/SWISSPROT;Acc:Q17551]E3 ubiquitin-protein ligase rpm-1 (EC 6.3.2.-) (Pam/highwire/rpm-1 protein) (Regulator of presynaptic morphology protein 1) (Synapse defective protein 3). [Source:Uniprot/SWISSPROT;Acc:Q17551] BY ORTHOLOGY TO:C01B7.6
15.7433 -18.68 0.0059466 1300 2 2 2 [+] picture button
CBG19317 ENSCBRT00000013514 dop-2 is orthologous to the human gene DOPAMINE RECEPTOR D2 (DRD2. OMIM:126450), which when mutated leads to myoclonus-dystonia syndrome. [Source: WormBase]dop-2 is orthologous to the human gene DOPAMINE RECEPTOR D2 (DRD2. OMIM:126450), which when mutated leads to myoclonus-dystonia syndrome. [Source: WormBase] BY ORTHOLOGY TO:K09G1.4b
15.8256 -15.6 0.00629265 1300 3 2 3 [+] picture button
CBG20412 ENSCBRT00000003613 Sperm-Specific family, class Q family member (ssq-4) [Source:RefSeq_peptide;Acc:NP_500704]Sperm-Specific family, class Q family member (ssq-4) [Source:RefSeq_peptide;Acc:NP_500704] BY ORTHOLOGY TO:T28H11.1
15.6957 -12.71 0.00629412 1300 4 1 5 [+] picture button
CBG06123 ENSCBRT00000008374 F12F6.1 [Source:RefSeq_peptide;Acc:NP_502182]F12F6.1 [Source:RefSeq_peptide;Acc:NP_502182] BY ORTHOLOGY TO:F12F6.1
15.7069 -17.55 0.00637312 1300 5 1 6 [+] picture button
CBG10321 ENSCBRT00000010214 Y38E10A.26 [Source:RefSeq_peptide;Acc:NP_001022426]Y38E10A.26 [Source:RefSeq_peptide;Acc:NP_001022426] BY ORTHOLOGY TO:Y38E10A.26
15.6885 -11.55 0.00638687 1300 7 2 7 [+] picture button
CBG02080 ENSCBRT00000004161 H01M10.1 [Source:RefSeq_peptide;Acc:NP_508466]H01M10.1 [Source:RefSeq_peptide;Acc:NP_508466] BY ORTHOLOGY TO:H01M10.1
15.8362 -15.48 0.00639751 1300 5 1 6 [+] picture button
ENSCBRT00000012300 T04F3.4 [Source:RefSeq_peptide;Acc:NP_505966]T04F3.4 [Source:RefSeq_peptide;Acc:NP_505966] BY ORTHOLOGY TO:T04F3.4
16.884 -19.36 0.00652339 1300 2 1 2 [+] picture button
CBG23203 ENSCBRT00000012157 F57B7.2 [Source:RefSeq_peptide;Acc:NP_505900]F57B7.2 [Source:RefSeq_peptide;Acc:NP_505900] BY ORTHOLOGY TO:F57B7.2
15.8166 -17.26 0.00661621 1300 7 2 14 [+] picture button
CBG14510 ENSCBRT00000003465 C46C11.3 [Source:RefSeq_peptide;Acc:NP_508792]C46C11.3 [Source:RefSeq_peptide;Acc:NP_508792] BY ORTHOLOGY TO:C46C11.3
17.9514 -21.53 0.00710601 1300 3 2 3 [+] picture button
CBG12428 ENSCBRT00000013166 C31H5.5 [Source:RefSeq_peptide;Acc:NP_492432]C31H5.5 [Source:RefSeq_peptide;Acc:NP_492432] BY ORTHOLOGY TO:C31H5.5
15.6497 -13.96 0.00744443 1300 3 2 5 [+] picture button

Page 1 of 4
1 2 3 4 next >>

Download table: GFF TXT
spacer
spacer