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Target Listing


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Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-72

123 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG17943 ENSCBRT00000002990 NHL (ring finger b-box coiled coil) domain containing family member (nhl-2) [Source:RefSeq_peptide;Acc:NP_498026]NHL (ring finger b-box coiled coil) domain containing family member (nhl-2) [Source:RefSeq_peptide;Acc:NP_498026] BY ORTHOLOGY TO:F26F4.7
15.2186 -13.45 8.59328e-05 1300 5 2 9 [+] picture button
CBG05891 ENSCBRT00000008980 F55G1.15 [Source:RefSeq_peptide;Acc:NP_501209]F55G1.15 [Source:RefSeq_peptide;Acc:NP_501209] BY ORTHOLOGY TO:F55G1.15
16.1962 -18.6 0.000373402 1300 9 1 8 [+] picture button
CBG10881 ENSCBRT00000001287 Max-binding protein MNT (Protein ROX) (Myc antagonist MNT). [Source:Uniprot/SWISSPROT;Acc:Q99583]Max-binding protein MNT (Protein ROX) (Myc antagonist MNT). [Source:Uniprot/SWISSPROT;Acc:Q99583] BY ORTHOLOGY TO:ENSOANT00000013762
16.7086 -18.71 0.000860462 1300 6 2 8 [+] picture button
CBG22587 ENSCBRT00000009857 nhr-34 encodes a member of the nuclear receptor superfamily. phylogenetic analyses indicate that NHR-34 is a divergent nuclear receptor that likely arose from the expansion and diversification of the HNF4 (NR2A) subgroup in C. elegans. the role of NHR-34 in C. elegans development and/or behavior, and the NHR-34 expression pattern, are not yet known. [Source: WormBase]nhr-34 encodes a member of the nuclear receptor superfamily. phylogenetic analyses indicate that NHR-34 is a divergent nuclear receptor that likely arose from the expansion and diversification of the HNF4 (NR2A) subgroup in C. elegans. the role of NHR-34 in C. elegans development and/or behavior, and the NHR-34 expression pattern, are not yet known. [Source: WormBase] BY ORTHOLOGY TO:F58G6.5c
15.8403 -17.74 0.00111668 1300 5 2 7 [+] picture button
CBG19860 ENSCBRT00000002417 C31H1.6a [Source:RefSeq_peptide;Acc:NP_500866]C31H1.6a [Source:RefSeq_peptide;Acc:NP_500866] BY ORTHOLOGY TO:C31H1.6a
15.2372 -19 0.0019891 1300 4 1 2 [+] picture button
CBG11054 ENSCBRT00000012318 cdh-7 encodes a protein that contains a cadherin domain. [Source: WormBase]cdh-7 encodes a protein that contains a cadherin domain. [Source: WormBase] BY ORTHOLOGY TO:R05H10.6
15.1566 -25.73 0.00293008 1300 2 1 1 [+] picture button
CBG03944 ENSCBRT00000009992 C01F4.2a [Source:RefSeq_peptide;Acc:NP_491465]C01F4.2a [Source:RefSeq_peptide;Acc:NP_491465] BY ORTHOLOGY TO:C01F4.2a
15.8297 -21.19 0.00304906 1300 6 1 6 [+] picture button
CBG08692 ENSCBRT00000002921 Serpentine Receptor, class T family member (srt-64) [Source:RefSeq_peptide;Acc:NP_504386]Serpentine Receptor, class T family member (srt-64) [Source:RefSeq_peptide;Acc:NP_504386] BY ORTHOLOGY TO:C03A7.9
16.422 -23.65 0.00305655 1300 5 1 4 [+] picture button
CBG22163 ENSCBRT00000004280 Y73E7A.8 [Source:RefSeq_peptide;Acc:NP_490874]Y73E7A.8 [Source:RefSeq_peptide;Acc:NP_490874] BY ORTHOLOGY TO:Y73E7A.8
15.1912 -15.69 0.00336833 1300 4 1 3 [+] picture button
CBG19888 ENSCBRT00000002426 T19E7.1 [Source:RefSeq_peptide;Acc:NP_500843]T19E7.1 [Source:RefSeq_peptide;Acc:NP_500843] BY ORTHOLOGY TO:T19E7.1
15.5851 -22.24 0.00338174 1300 5 1 3 [+] picture button
CBG13368 ENSCBRT00000009468 32 kDa beta-galactoside-binding lectin lec-3 (32 kDa GBP). [Source:Uniprot/SWISSPROT;Acc:Q09581]32 kDa beta-galactoside-binding lectin lec-3 (32 kDa GBP). [Source:Uniprot/SWISSPROT;Acc:Q09581] BY ORTHOLOGY TO:ZK892.1a
15.0278 -21.21 0.00384378 1300 6 1 6 [+] picture button
CBG10878 ENSCBRT00000001294 R03E9.2 [Source:RefSeq_peptide;Acc:NP_509135]R03E9.2 [Source:RefSeq_peptide;Acc:NP_509135] BY ORTHOLOGY TO:R03E9.2
15.9796 -21.02 0.00400315 1300 1 1 1 [+] picture button
CBG22707 ENSCBRT00000004217 C17H11.6c [Source:RefSeq_peptide;Acc:NP_001024416]C17H11.6c [Source:RefSeq_peptide;Acc:NP_001024416] BY ORTHOLOGY TO:C17H11.6a
15.7172 -20.46 0.00420754 1300 4 1 5 [+] picture button
CBG17560 ENSCBRT00000002110 Histidine ammonia-lyase (EC 4.3.1.3) (Histidase). [Source:Uniprot/SWISSPROT;Acc:P42357]Histidine ammonia-lyase (EC 4.3.1.3) (Histidase). [Source:Uniprot/SWISSPROT;Acc:P42357] BY ORTHOLOGY TO:ENSGACT00000006010
15.4327 -17.84 0.00464276 1300 4 1 3 [+] picture button
CBG23622 ENSCBRT00000001538 grl-13 encodes a hedgehog-like protein, with an N-terminal signal sequence, a central low-complexity region, and a C-terminal Ground-like (Grl) domain. GRL-13 is expressed in larval arcade cells. the Grl domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins. [Source: WormBase]grl-13 encodes a hedgehog-like protein, with an N-terminal signal sequence, a central low-complexity region, and a C-terminal Ground-like (Grl) domain. GRL-13 is expressed in larval arcade cells. the Grl domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins. [Source: WormBase] BY ORTHOLOGY TO:F32D1.4
15.4554 -18.82 0.00551478 1300 5 1 5 [+] picture button
CBG19083 ENSCBRT00000013951 odr-2 encodes three isoforms of a predicted membrane-associated protein related to the Ly-6 (leukocyte antigen-6) family of GPI (glycosylated phosphatidylinositol)-linked signaling proteins. ODR-2 activity is required for proper functioning of the AWC olfactory neurons and thus for chemotaxis in response to AWC-sensed odorants. ODR-2 is expressed at high levels in sensory neurons, motor neurons, and interneurons, where it appears to be enriched in axons. [Source: WormBase]odr-2 encodes three isoforms of a predicted membrane-associated protein related to the Ly-6 (leukocyte antigen-6) family of GPI (glycosylated phosphatidylinositol)-linked signaling proteins. ODR-2 activity is required for proper functioning of the AWC olfactory neurons and thus for chemotaxis in response to AWC-sensed odorants. ODR-2 is expressed at high levels in sensory neurons, motor neurons, and interneurons, where it appears to be enriched in axons. [Source: WormBase] BY ORTHOLOGY TO:T01C4.2a
15.1267 -18.63 0.00592139 1300 2 2 4 [+] picture button
CBG00089 ENSCBRT00000001559 Nuclear Hormone Receptor family member (nhr-27) [Source:RefSeq_peptide;Acc:NP_510123]Nuclear Hormone Receptor family member (nhr-27) [Source:RefSeq_peptide;Acc:NP_510123] BY ORTHOLOGY TO:F16H9.2
15.2149 -12.27 0.00612538 1300 1 1 1 [+] picture button
CBG06974 ENSCBRT00000012324 mitochondrial ribosomal protein, L28, putativemitochondrial ribosomal protein, L28, putative BY ORTHOLOGY TO:AAEL008601-RA
17.319 -26.89 0.00615017 1300 2 1 2 [+] picture button
ENSCBRT00000003373 R08E3.2 [Source:RefSeq_peptide;Acc:NP_508823]R08E3.2 [Source:RefSeq_peptide;Acc:NP_508823] BY ORTHOLOGY TO:R08E3.2
15.0278 -25.76 0.00671716 1300 2 1 2 [+] picture button
CBG08170 ENSCBRT00000003768 R04A9.1 [Source:RefSeq_peptide;Acc:NP_508097]R04A9.1 [Source:RefSeq_peptide;Acc:NP_508097] BY ORTHOLOGY TO:R04A9.1
17.1769 -28.13 0.00722552 1300 4 1 4 [+] picture button
CBG22907 ENSCBRT00000008936 Nuclear Hormone Receptor family member (nhr-60) [Source:RefSeq_peptide;Acc:NP_506930]Nuclear Hormone Receptor family member (nhr-60) [Source:RefSeq_peptide;Acc:NP_506930] BY ORTHOLOGY TO:F57A10.5
15.2427 -18.29 0.00729338 1300 2 1 2 [+] picture button
CBG19543 ENSCBRT00000001766 gcy-21 is predicted to encode a guanylate cyclase. [Source: WormBase]gcy-21 is predicted to encode a guanylate cyclase. [Source: WormBase] BY ORTHOLOGY TO:F22E5.3
14.8732 -17.46 0.00837714 1300 4 1 4 [+] picture button
CBG19194 ENSCBRT00000013360 The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). [Source: WormBase]The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). [Source: WormBase] BY ORTHOLOGY TO:F21C10.8b
14.9009 -12.61 0.00842847 1300 5 2 4 [+] picture button
CBG14861 ENSCBRT00000004568 bca-1 encodes a member of the carbonic anhydrase family. [Source: WormBase]bca-1 encodes a member of the carbonic anhydrase family. [Source: WormBase] BY ORTHOLOGY TO:T13C5.5a
15.0614 -21.65 0.00899392 1300 3 1 3 [+] picture button
CBG16691 ENSCBRT00000014642 clc-5 encodes a claudin homolog that may be required for normal cohesion of apical junctions in epithelia. CLC-5 is worm-specific, with obvious homologs only in C. elegans. CLC-5 has no obvious function in mass RNAi assays. claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water. [Source: WormBase]clc-5 encodes a claudin homolog that may be required for normal cohesion of apical junctions in epithelia. CLC-5 is worm-specific, with obvious homologs only in C. elegans. CLC-5 has no obvious function in mass RNAi assays. claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water. [Source: WormBase] BY ORTHOLOGY TO:C01C10.4
15.7465 -16.04 0.0093288 1300 4 1 4 [+] picture button
CBG13002 ENSCBRT00000012953 Meckelin (Meckel syndrome type 3 protein homolog) (Transmembrane protein 67). [Source:Uniprot/SWISSPROT;Acc:P0C152]Meckelin (Meckel syndrome type 3 protein homolog) (Transmembrane protein 67). [Source:Uniprot/SWISSPROT;Acc:P0C152] BY ORTHOLOGY TO:ENSRNOT00000021839
14.9141 -16.52 0.00943786 1300 2 1 2 [+] picture button
CBG21143 ENSCBRT00000000912 Putative ABC transporter C05D10.3 in chromosome III. [Source:Uniprot/SWISSPROT;Acc:Q11180]Putative ABC transporter C05D10.3 in chromosome III. [Source:Uniprot/SWISSPROT;Acc:Q11180] BY ORTHOLOGY TO:C05D10.3
16.9388 -22.1 0.00945981 1300 1 1 2 [+] picture button
CBG10092 ENSCBRT00000007244 Probable tyrosine-protein phosphatase F54C8.4 (EC 3.1.3.48). [Source:Uniprot/SWISSPROT;Acc:P34442]Probable tyrosine-protein phosphatase F54C8.4 (EC 3.1.3.48). [Source:Uniprot/SWISSPROT;Acc:P34442] BY ORTHOLOGY TO:F54C8.4
15.0099 -16.65 0.00967615 1300 4 2 6 [+] picture button
CBG07184 ENSCBRT00000012224 Y51H7C.9 [Source:RefSeq_peptide;Acc:NP_493968]Y51H7C.9 [Source:RefSeq_peptide;Acc:NP_493968] BY ORTHOLOGY TO:Y51H7C.9
16.8377 -20.92 0.0106054 1300 6 1 7 [+] picture button
CBG08329 ENSCBRT00000012959 Y69E1A.4 [Source:RefSeq_peptide;Acc:NP_502041]Y69E1A.4 [Source:RefSeq_peptide;Acc:NP_502041] BY ORTHOLOGY TO:Y69E1A.4
16.8339 -18.42 0.0106505 1300 6 2 6 [+] picture button
CBG05179 ENSCBRT00000002639 T24G10.2 [Source:RefSeq_peptide;Acc:NP_498159]T24G10.2 [Source:RefSeq_peptide;Acc:NP_498159] BY ORTHOLOGY TO:T24G10.2
16.819 -25.74 0.0108313 1300 3 1 3 [+] picture button
CBG03379 ENSCBRT00000007140 T26C12.2 [Source:RefSeq_peptide;Acc:NP_500307]T26C12.2 [Source:RefSeq_peptide;Acc:NP_500307] BY ORTHOLOGY TO:T26C12.2
16.7394 -24.35 0.011849 1300 5 1 6 [+] picture button
CBG21928 ENSCBRT00000008191 CG7154-PA [Source:RefSeq_peptide;Acc:NP_609148]CG7154-PA [Source:RefSeq_peptide;Acc:NP_609148] BY ORTHOLOGY TO:CG7154-RA
16.7281 -25.24 0.0120018 1300 3 1 3 [+] picture button
CBG21810 ENSCBRT00000004890 Y32G9B.1 [Source:RefSeq_peptide;Acc:NP_503513]Y32G9B.1 [Source:RefSeq_peptide;Acc:NP_503513] BY ORTHOLOGY TO:Y32G9B.1
15.1009 -17.33 0.0123432 1300 3 1 3 [+] picture button
CBG22605 ENSCBRT00000009815 C29F3.7 [Source:RefSeq_peptide;Acc:NP_741643]C29F3.7 [Source:RefSeq_peptide;Acc:NP_741643] BY ORTHOLOGY TO:C29F3.7
16.6534 -17.85 0.0130561 1300 4 1 4 [+] picture button
CBG09460 ENSCBRT00000006420 Innexin-7 (Protein opu-7). [Source:Uniprot/SWISSPROT;Acc:Q21123]Innexin-7 (Protein opu-7). [Source:Uniprot/SWISSPROT;Acc:Q21123] BY ORTHOLOGY TO:K02B2.4
16.6057 -19.49 0.0137753 1300 4 2 4 [+] picture button
CBG21027 ENSCBRT00000000709 Y17G7B.20 [Source:RefSeq_peptide;Acc:NP_872051]Y17G7B.20 [Source:RefSeq_peptide;Acc:NP_872051] BY ORTHOLOGY TO:Y17G7B.20
16.5555 -23.1 0.014576 1300 3 1 3 [+] picture button
CBG03853 ENSCBRT00000008694 LSY-2-Like family member (lsl-1) [Source:RefSeq_peptide;Acc:NP_492621]LSY-2-Like family member (lsl-1) [Source:RefSeq_peptide;Acc:NP_492621] BY ORTHOLOGY TO:F52F12.4
16.5143 -21.81 0.0152667 1300 4 2 4 [+] picture button
CBG00091 ENSCBRT00000001558 The adt-1 gene encodes a metalloproteinase with disintegrin-like and metalloproteinase with thrombospondin type I motifs (ADAMTS) that is required for male tail morphogenesis. [Source: WormBase]The adt-1 gene encodes a metalloproteinase with disintegrin-like and metalloproteinase with thrombospondin type I motifs (ADAMTS) that is required for male tail morphogenesis. [Source: WormBase] BY ORTHOLOGY TO:C02B4.1
16.356 -23.17 0.0182361 1300 1 1 1 [+] picture button
CBG03475 ENSCBRT00000007223 col-123 is homologous to the human gene A TYPE IV COLLAGEN (COL6A1. OMIM:303631), which when mutated is sometimes associated with diffuse leiomyomatosis. [Source: WormBase]col-123 is homologous to the human gene A TYPE IV COLLAGEN (COL6A1. OMIM:303631), which when mutated is sometimes associated with diffuse leiomyomatosis. [Source: WormBase] BY ORTHOLOGY TO:W08D2.6
16.3131 -23.87 0.0191327 1300 2 1 2 [+] picture button
CBG18068 ENSCBRT00000003168 R07E5.11 [Source:RefSeq_peptide;Acc:NP_497895]R07E5.11 [Source:RefSeq_peptide;Acc:NP_497895] BY ORTHOLOGY TO:R07E5.11
16.3131 -20.2 0.0191327 1300 3 1 4 [+] picture button
ENSCBRT00000003167 programmed cell death 2 [Source:RefSeq_peptide;Acc:NP_001026235]programmed cell death 2 [Source:RefSeq_peptide;Acc:NP_001026235] BY ORTHOLOGY TO:ENSGALT00000018210
16.3131 -20.2 0.0191327 1300 1 1 1 [+] picture button
CBG19478 ENSCBRT00000013072 F14B4.1 [Source:RefSeq_peptide;Acc:NP_492474]F14B4.1 [Source:RefSeq_peptide;Acc:NP_492474] BY ORTHOLOGY TO:F14B4.1
16.2518 -21.08 0.0204919 1300 5 1 5 [+] picture button
ENSCBRT00000011635 C18E3.5 [Source:RefSeq_peptide;Acc:NP_491325]C18E3.5 [Source:RefSeq_peptide;Acc:NP_491325] BY ORTHOLOGY TO:C18E3.5
16.1884 -20.75 0.0219941 1300 1 1 1 [+] picture button
CBG08092 ENSCBRT00000003568 presenilin 2 [Source:MarkerSymbol;Acc:MGI:109284]presenilin 2 [Source:MarkerSymbol;Acc:MGI:109284] BY ORTHOLOGY TO:ENSMUST00000010753
16.1364 -25.46 0.0233088 1300 4 1 6 [+] picture button
CBG02748 ENSCBRT00000007338 ZK930.2 [Source:RefSeq_peptide;Acc:NP_496539]ZK930.2 [Source:RefSeq_peptide;Acc:NP_496539] BY ORTHOLOGY TO:ZK930.2
16.1154 -16.5 0.0238606 1300 10 1 17 [+] picture button
CBG02841 ENSCBRT00000006229 ZK20.1 [Source:RefSeq_peptide;Acc:NP_496486]ZK20.1 [Source:RefSeq_peptide;Acc:NP_496486] BY ORTHOLOGY TO:ZK20.1
16.0548 -16.5 0.0255242 1300 2 2 2 [+] picture button
CBG05449 ENSCBRT00000004752 Rrp4 CG3931-PA [Source:RefSeq_peptide;Acc:NP_611807]Rrp4 CG3931-PA [Source:RefSeq_peptide;Acc:NP_611807] BY ORTHOLOGY TO:CG3931-RA
16.0386 -20.05 0.0259881 1300 4 1 6 [+] picture button
CBG20127 ENSCBRT00000000716 Y111B2A.12 [Source:RefSeq_peptide;Acc:NP_499643]Y111B2A.12 [Source:RefSeq_peptide;Acc:NP_499643] BY ORTHOLOGY TO:Y111B2A.12
16.0362 -21.11 0.0260597 1300 6 1 9 [+] picture button
CBG08755 ENSCBRT00000005220 Enhancer of Ksr-1 Lethality family member (ekl-4) [Source:RefSeq_peptide;Acc:NP_740945]Enhancer of Ksr-1 Lethality family member (ekl-4) [Source:RefSeq_peptide;Acc:NP_740945] BY ORTHOLOGY TO:Y105E8A.17
16.0165 -16.48 0.0266345 1300 1 1 1 [+] picture button

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