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Target Listing


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Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-71

127 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG15645 ENSCBRT00000011897 Novel protein similar to human general control of amino-acid synthesis 1-like 1 (Yeast) (GCN1) (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q7T160]Novel protein similar to human general control of amino-acid synthesis 1-like 1 (Yeast) (GCN1) (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q7T160] BY ORTHOLOGY TO:ENSDART00000081272
17.4519 -12.77 0.000266019 1300 5 1 6 [+] picture button
CBG20612 ENSCBRT00000001413 F26G1.5 [Source:RefSeq_peptide;Acc:NP_494856]F26G1.5 [Source:RefSeq_peptide;Acc:NP_494856] BY ORTHOLOGY TO:F26G1.5
16.9802 -19.78 0.000542056 1300 2 1 2 [+] picture button
CBG15447 ENSCBRT00000010766 SID1 transmembrane family member 2 precursor. [Source:Uniprot/SWISSPROT;Acc:Q8NBJ9]SID1 transmembrane family member 2 precursor. [Source:Uniprot/SWISSPROT;Acc:Q8NBJ9] BY ORTHOLOGY TO:ENSXETT00000021832
16.6327 -19.42 0.000570579 1300 8 3 11 [+] picture button
CBG06222 ENSCBRT00000008255 Lin-48 expression abnormal protein. [Source:Uniprot/SPTREMBL;Acc:Q3YFF5]Lin-48 expression abnormal protein. [Source:Uniprot/SPTREMBL;Acc:Q3YFF5] BY ORTHOLOGY TO:F11A10.1
16.9166 -18.99 0.000693049 1300 5 2 5 [+] picture button
CBG01894 ENSCBRT00000005743 T09B9.5 [Source:RefSeq_peptide;Acc:NP_509641]T09B9.5 [Source:RefSeq_peptide;Acc:NP_509641] BY ORTHOLOGY TO:T09B9.5
16.7924 -23.43 0.000806362 1300 4 1 4 [+] picture button
CBG00912 ENSCBRT00000003938 CG1841-PA, isoform A [Source:RefSeq_peptide;Acc:NP_572743]CG1841-PA, isoform A [Source:RefSeq_peptide;Acc:NP_572743] BY ORTHOLOGY TO:CG1841-RB
17.1463 -18.37 0.00106523 1300 7 1 7 [+] picture button
CBG16180 ENSCBRT00000012592 pes-8 encodes a novel protein that contains a proline-rich region and a predicted transmembrane domain, but no otherwise recognizably conserved domains. pes-8 was identified in promoter trapping screens and based on large-scale RNA-mediated interference (RNAi) screens, appears to be required for egg laying, germline development, locomotion, and regulation of adult lifespan. a pes-8 reporter is expressed at the cell surfaces of the spermathecal valve cell, the uterine wall, the vulva, and the rectal epithelium. strong expression is also detected in the uterus during its development. PES-8 may be required for normal morphology of the openings of the spermathecal valve, the vulva, and the rectum, a hypothesis consistent with its expression pattern and RNAi phenotype. [Source: WormBase]pes-8 encodes a novel protein that contains a proline-rich region and a predicted transmembrane domain, but no otherwise recognizably conserved domains. pes-8 was identified in promoter trapping screens and based on large-scale RNA-mediated interference (RNAi) screens, appears to be required for egg laying, germline development, locomotion, and regulation of adult lifespan. a pes-8 reporter is expressed at the cell surfaces of the spermathecal valve cell, the uterine wall, the vulva, and the rectal epithelium. strong expression is also detected in the uterus during its development. PES-8 may be required for normal morphology of the openings of the spermathecal valve, the vulva, and the rectum, a hypothesis consistent with its expression pattern and RNAi phenotype. [Source: WormBase] BY ORTHOLOGY TO:F18G5.2
17.0412 -18.92 0.00112288 1300 6 2 10 [+] picture button
CBG02628 ENSCBRT00000007516 C18H7.4 [Source:RefSeq_peptide;Acc:NP_499953]C18H7.4 [Source:RefSeq_peptide;Acc:NP_499953] BY ORTHOLOGY TO:C18H7.4
16.6224 -18.36 0.00115279 1300 1 1 1 [+] picture button
CBG02208 ENSCBRT00000004965 ribosomal protein L30 [Source:RefSeq_peptide;Acc:NP_956322]ribosomal protein L30 [Source:RefSeq_peptide;Acc:NP_956322] BY ORTHOLOGY TO:ENSDART00000052082
16.412 -18.13 0.00136971 1300 4 1 3 [+] picture button
CBG06966 ENSCBRT00000012293 chi-2 encodes a putative chitin synthase, most closely related to chitin synthases characterized in arthropods. [Source: WormBase]chi-2 encodes a putative chitin synthase, most closely related to chitin synthases characterized in arthropods. [Source: WormBase] BY ORTHOLOGY TO:F48A11.1
17.3018 -20.96 0.00136971 1300 5 1 6 [+] picture button
CBG06986 ENSCBRT00000012355 COLlagen family member (col-68) [Source:RefSeq_peptide;Acc:NP_493660]COLlagen family member (col-68) [Source:RefSeq_peptide;Acc:NP_493660] BY ORTHOLOGY TO:C50D2.4
16.9336 -22.5 0.00142755 1300 5 2 4 [+] picture button
CBG03367 ENSCBRT00000007131 Y67D8C.9 [Source:RefSeq_peptide;Acc:NP_500292]Y67D8C.9 [Source:RefSeq_peptide;Acc:NP_500292] BY ORTHOLOGY TO:Y67D8C.9
16.5235 -23.67 0.00158049 1300 5 2 5 [+] picture button
CBG11886 ENSCBRT00000009291 Zinc metalloproteinase nas-36 precursor (EC 3.4.24.21) (Nematode astacin 36). [Source:Uniprot/SWISSPROT;Acc:Q18206]Zinc metalloproteinase nas-36 precursor (EC 3.4.24.21) (Nematode astacin 36). [Source:Uniprot/SWISSPROT;Acc:Q18206] BY ORTHOLOGY TO:C26C6.3
16.4678 -16.16 0.00169417 1300 1 1 1 [+] picture button
CBG06204 ENSCBRT00000008287 ZK829.9 [Source:RefSeq_peptide;Acc:NP_502272]ZK829.9 [Source:RefSeq_peptide;Acc:NP_502272] BY ORTHOLOGY TO:ZK829.9
16.5265 -24.17 0.00177287 1300 5 1 5 [+] picture button
CBG05362 ENSCBRT00000002812 W02C12.1 [Source:RefSeq_peptide;Acc:NP_500460]W02C12.1 [Source:RefSeq_peptide;Acc:NP_500460] BY ORTHOLOGY TO:W02C12.1
16.4323 -13.11 0.00190939 1300 5 1 5 [+] picture button
CBG06824 ENSCBRT00000007412 R107.5a [Source:RefSeq_peptide;Acc:NP_499004]R107.5a [Source:RefSeq_peptide;Acc:NP_499004] BY ORTHOLOGY TO:R107.5a
16.3389 -13.33 0.00208116 1300 2 2 6 [+] picture button
CBG10611 ENSCBRT00000008851 Nematode Specific Peptide family, group C family member (nspc-7) [Source:RefSeq_peptide;Acc:NP_741862]Nematode Specific Peptide family, group C family member (nspc-7) [Source:RefSeq_peptide;Acc:NP_741862] BY ORTHOLOGY TO:C03G5.2
16.3547 -15.72 0.00229162 1300 2 1 2 [+] picture button
CBG18864 ENSCBRT00000012667 Transmembrane protein 41A precursor. [Source:Uniprot/SWISSPROT;Acc:Q96HV5]Transmembrane protein 41A precursor. [Source:Uniprot/SWISSPROT;Acc:Q96HV5] BY ORTHOLOGY TO:ENST00000296254
17.288 -15.53 0.00254015 1300 8 1 10 [+] picture button
CBG06229 ENSCBRT00000008245 asparagine synthetase domain containing 1 [Source:RefSeq_peptide;Acc:NP_001029852]asparagine synthetase domain containing 1 [Source:RefSeq_peptide;Acc:NP_001029852] BY ORTHOLOGY TO:ENSBTAT00000000622
16.412 -18.66 0.00263473 1300 8 1 4 [+] picture button
CBG16748 ENSCBRT00000012835 F26A10.2 encodes a protein with four zinc-finger domains and a glutamine/asparagine-rich domain, that is required for maintenance of the germline and for locomotion. F26A10.2(RNAi) animals are uncoordinated and have sterile progeny. [Source: WormBase]F26A10.2 encodes a protein with four zinc-finger domains and a glutamine/asparagine-rich domain, that is required for maintenance of the germline and for locomotion. F26A10.2(RNAi) animals are uncoordinated and have sterile progeny. [Source: WormBase] BY ORTHOLOGY TO:F26A10.2
16.0573 -19.4 0.00284093 1300 2 1 1 [+] picture button
CBG12389 ENSCBRT00000013135 unc-29 encodes an non-alpha subunit of the nicotinic acetylcholine receptor (nAChR) superfamily. UNC-29 is required for normal locomotion and egg-laying, and functions as a subunit of a ligand-gated ion channel that likely mediates fast actions of acetylcholine at neuromuscular junctions and in the nervous system. when coexpressed with LEV-1, a non-alpha nAChR subunit, and UNC-38 or UNC-63, alpha AChR subunits, the resulting multimer can form levamisole-gated channels. UNC-29 is expressed in body wall muscle. [Source: WormBase]unc-29 encodes an non-alpha subunit of the nicotinic acetylcholine receptor (nAChR) superfamily. UNC-29 is required for normal locomotion and egg-laying, and functions as a subunit of a ligand-gated ion channel that likely mediates fast actions of acetylcholine at neuromuscular junctions and in the nervous system. when coexpressed with LEV-1, a non-alpha nAChR subunit, and UNC-38 or UNC-63, alpha AChR subunits, the resulting multimer can form levamisole-gated channels. UNC-29 is expressed in body wall muscle. [Source: WormBase] BY ORTHOLOGY TO:T08G11.5
16.1743 -17.79 0.00292197 1300 2 2 2 [+] picture button
CBG16834 ENSCBRT00000012758 cca-1 encodes a calcium channel alpha subunit that is homologous to vertebrate T-type calcium channel alpha 1 subunits. CCA-1 is required for regulation of pharyngeal pumping, specifically for the efficient initiation of action potentials in the pharynx in response to excitatory inputs. a CCA-1::GFP fusion protein is expressed strongly in pharyngeal muscle as well as in many neurons, including particular subsets of neurons in the head, pharynx, ventral nerve cord, and anal ganglia. [Source: WormBase]cca-1 encodes a calcium channel alpha subunit that is homologous to vertebrate T-type calcium channel alpha 1 subunits. CCA-1 is required for regulation of pharyngeal pumping, specifically for the efficient initiation of action potentials in the pharynx in response to excitatory inputs. a CCA-1::GFP fusion protein is expressed strongly in pharyngeal muscle as well as in many neurons, including particular subsets of neurons in the head, pharynx, ventral nerve cord, and anal ganglia. [Source: WormBase] BY ORTHOLOGY TO:C54D2.5a
16.2318 -18.67 0.00299229 1300 5 2 5 [+] picture button
CBG00282 ENSCBRT00000000292 F26A3.6 [Source:RefSeq_peptide;Acc:NP_492135]F26A3.6 [Source:RefSeq_peptide;Acc:NP_492135] BY ORTHOLOGY TO:F26A3.6
16.159 -17.79 0.00301498 1300 6 1 7 [+] picture button
CBG18605 ENSCBRT00000011200 F21A3.4 [Source:RefSeq_peptide;Acc:NP_506865]F21A3.4 [Source:RefSeq_peptide;Acc:NP_506865] BY ORTHOLOGY TO:F21A3.4
15.9084 -16.85 0.00314484 1300 7 1 8 [+] picture button
CBG14076 ENSCBRT00000002543 F48B9.5 [Source:RefSeq_peptide;Acc:NP_508396]F48B9.5 [Source:RefSeq_peptide;Acc:NP_508396] BY ORTHOLOGY TO:F48B9.5
16.1975 -12.44 0.00316883 1300 2 1 2 [+] picture button
CBG14077 ENSCBRT00000002542 dpy-3 encodes a cuticular collagen. along with dpy-2, dpy-7, dpy-8, and dpy-10, dpy-3 is required postembryonically for annular furrow formation and/or maintenance. specifically, DPY-3 activity is required for proper assembly of the DPY-7 collagen into the mature extracellular matrix. during each cuticle synthetic period, dpy-3 mRNA is expressed approximately four hours prior to the secretion of new cuticle. [Source: WormBase]dpy-3 encodes a cuticular collagen. along with dpy-2, dpy-7, dpy-8, and dpy-10, dpy-3 is required postembryonically for annular furrow formation and/or maintenance. specifically, DPY-3 activity is required for proper assembly of the DPY-7 collagen into the mature extracellular matrix. during each cuticle synthetic period, dpy-3 mRNA is expressed approximately four hours prior to the secretion of new cuticle. [Source: WormBase] BY ORTHOLOGY TO:EGAP7.1
16.5765 -16.35 0.00335149 1300 4 2 5 [+] picture button
CBG15106 ENSCBRT00000010263 PET112-like (yeast) [Source:MarkerSymbol;Acc:MGI:2442496]PET112-like (yeast) [Source:MarkerSymbol;Acc:MGI:2442496] BY ORTHOLOGY TO:ENSMUST00000029726
16.2212 -18.22 0.00373569 1300 3 1 2 [+] picture button
CBG15070 ENSCBRT00000000510 Y11D7A.8 [Source:RefSeq_peptide;Acc:NP_501614]Y11D7A.8 [Source:RefSeq_peptide;Acc:NP_501614] BY ORTHOLOGY TO:Y11D7A.8
16.0263 -19.78 0.00395246 1300 5 2 6 [+] picture button
CBG18899 ENSCBRT00000014177 F31F7.2 [Source:RefSeq_peptide;Acc:NP_504602]F31F7.2 [Source:RefSeq_peptide;Acc:NP_504602] BY ORTHOLOGY TO:F31F7.2
16.0165 -14.84 0.00418002 1300 1 1 1 [+] picture button
CBG04322 ENSCBRT00000007690 C56C10.4 [Source:RefSeq_peptide;Acc:NP_495334]C56C10.4 [Source:RefSeq_peptide;Acc:NP_495334] BY ORTHOLOGY TO:C56C10.4
15.6475 -17.1 0.00435151 1300 4 1 3 [+] picture button
CBG07551 ENSCBRT00000011165 ram-5 encodes a novel transmembrane protein. during male tail development, ram-5 activity is required in ray structural cells for proper sensory ray morphogenesis. a RAM-5::GFP fusion protein is expressed in all of the ray structural cells of the male tail, as well as additional sensory support cells in both hermaphrodites and males, including those of the inner labial sensilla as well as the ADE, PDE, and phasmid socket cells. [Source: WormBase]ram-5 encodes a novel transmembrane protein. during male tail development, ram-5 activity is required in ray structural cells for proper sensory ray morphogenesis. a RAM-5::GFP fusion protein is expressed in all of the ray structural cells of the male tail, as well as additional sensory support cells in both hermaphrodites and males, including those of the inner labial sensilla as well as the ADE, PDE, and phasmid socket cells. [Source: WormBase] BY ORTHOLOGY TO:T24C2.1
16.2426 -17.55 0.00437551 1300 3 1 2 [+] picture button
CBG20077 ENSCBRT00000000651 F58G6.7 [Source:RefSeq_peptide;Acc:NP_501714]F58G6.7 [Source:RefSeq_peptide;Acc:NP_501714] BY ORTHOLOGY TO:F58G6.7
16.4321 -20.29 0.004415 1300 3 1 3 [+] picture button
CBG02947 ENSCBRT00000006108 T06D8.3 [Source:RefSeq_peptide;Acc:NP_496399]T06D8.3 [Source:RefSeq_peptide;Acc:NP_496399] BY ORTHOLOGY TO:T06D8.3
16.0956 -20.3 0.00446011 1300 5 1 5 [+] picture button
CBG00574 ENSCBRT00000003108 The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). [Source: WormBase]The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). [Source: WormBase] BY ORTHOLOGY TO:W01C9.3
15.6221 -14.18 0.00457719 1300 4 2 4 [+] picture button
CBG09321 ENSCBRT00000006338 F44E7.7 [Source:RefSeq_peptide;Acc:NP_504517]F44E7.7 [Source:RefSeq_peptide;Acc:NP_504517] BY ORTHOLOGY TO:F44E7.7
16.2143 -18.15 0.00458684 1300 4 1 3 [+] picture button
CBG21423 ENSCBRT00000003687 Serpentine Receptor, class X family member (srx-97) [Source:RefSeq_peptide;Acc:NP_494609]Serpentine Receptor, class X family member (srx-97) [Source:RefSeq_peptide;Acc:NP_494609] BY ORTHOLOGY TO:F19B10.7
16.2173 -20.55 0.00462727 1300 5 1 4 [+] picture button
CBG23890 ENSCBRT00000007815 Homolog of Odr-2(Two) family member (hot-4) [Source:RefSeq_peptide;Acc:NP_741179]Homolog of Odr-2(Two) family member (hot-4) [Source:RefSeq_peptide;Acc:NP_741179] BY ORTHOLOGY TO:T12A2.16b
16.1154 -16.31 0.00466061 1300 3 2 3 [+] picture button
CBG11112 ENSCBRT00000012222 C06C3.3 [Source:RefSeq_peptide;Acc:NP_495995]C06C3.3 [Source:RefSeq_peptide;Acc:NP_495995] BY ORTHOLOGY TO:C06C3.3
15.9397 -15.83 0.0047102 1300 3 1 3 [+] picture button
CBG09836 ENSCBRT00000008010 Y71H2AL.1 [Source:RefSeq_peptide;Acc:NP_497601]Y71H2AL.1 [Source:RefSeq_peptide;Acc:NP_497601] BY ORTHOLOGY TO:Y71H2AL.1
15.9084 -17.75 0.00501675 1300 7 1 6 [+] picture button
CBG12872 ENSCBRT00000013773 T22E7.2 [Source:RefSeq_peptide;Acc:NP_491675]T22E7.2 [Source:RefSeq_peptide;Acc:NP_491675] BY ORTHOLOGY TO:T22E7.2
15.9436 -17.33 0.00544334 1300 4 1 4 [+] picture button
CBG22217 ENSCBRT00000003726 M01D7.4 [Source:RefSeq_peptide;Acc:NP_490909]M01D7.4 [Source:RefSeq_peptide;Acc:NP_490909] BY ORTHOLOGY TO:M01D7.4
15.8678 -18.1 0.00575689 1300 2 1 2 [+] picture button
CBG09219 ENSCBRT00000001828 C44F1.1 [Source:RefSeq_peptide;Acc:NP_497761]C44F1.1 [Source:RefSeq_peptide;Acc:NP_497761] BY ORTHOLOGY TO:C44F1.1
15.8981 -16.91 0.00580796 1300 3 1 3 [+] picture button
CBG23728 ENSCBRT00000004458 Pleckstrin homology Sec7 and coiled-coil domains-binding protein (Cytohesin-binding protein HE) (CYBR) (Cytohesin binder and regulator) (Cytohesin-interacting protein). [Source:Uniprot/SWISSPROT;Acc:O60759]Pleckstrin homology Sec7 and coiled-coil domains-binding protein (Cytohesin-binding protein HE) (CYBR) (Cytohesin binder and regulator) (Cytohesin-interacting protein). [Source:Uniprot/SWISSPROT;Acc:O60759] BY ORTHOLOGY TO:ENST00000264192
15.7937 -13.72 0.00631281 1300 5 2 8 [+] picture button
CBG02231 ENSCBRT00000004961 Temporarily Assigned Gene name family member (tag-68) [Source:RefSeq_peptide;Acc:NP_492746]Temporarily Assigned Gene name family member (tag-68) [Source:RefSeq_peptide;Acc:NP_492746] BY ORTHOLOGY TO:F37D6.6
17.1734 -23.89 0.00726991 1300 4 2 5 [+] picture button
CBG03853 ENSCBRT00000008694 LSY-2-Like family member (lsl-1) [Source:RefSeq_peptide;Acc:NP_492621]LSY-2-Like family member (lsl-1) [Source:RefSeq_peptide;Acc:NP_492621] BY ORTHOLOGY TO:F52F12.4
15.7185 -13.16 0.00733021 1300 4 2 4 [+] picture button
CBG02656 ENSCBRT00000007500 Degenerin-like protein T28D9.7 in chromosome II. [Source:Uniprot/SWISSPROT;Acc:Q10025]Degenerin-like protein T28D9.7 in chromosome II. [Source:Uniprot/SWISSPROT;Acc:Q10025] BY ORTHOLOGY TO:T28D9.7
15.9004 -16.86 0.00757113 1300 3 2 3 [+] picture button
CBG03505 ENSCBRT00000006199 Diacylglycerol kinase kappa (EC 2.7.1.107) (Diglyceride kinase kappa) (DGK-kappa) (DAG kinase kappa) (142 kDa diacylglycerol kinase). [Source:Uniprot/SWISSPROT;Acc:Q5KSL6]Diacylglycerol kinase kappa (EC 2.7.1.107) (Diglyceride kinase kappa) (DGK-kappa) (DAG kinase kappa) (142 kDa diacylglycerol kinase). [Source:Uniprot/SWISSPROT;Acc:Q5KSL6] BY ORTHOLOGY TO:ENSORLT00000010561
16.0224 -19.25 0.00777881 1300 2 1 2 [+] picture button
CBG12874 ENSCBRT00000013775 che-14 encodes a protein with a sterol-sensing domain. CHE-14 protein is involved in the exocytotic secretion of lipid-modified proteins at the apical surface of certain epithelial cells. [Source: WormBase]che-14 encodes a protein with a sterol-sensing domain. CHE-14 protein is involved in the exocytotic secretion of lipid-modified proteins at the apical surface of certain epithelial cells. [Source: WormBase] BY ORTHOLOGY TO:F56H1.1
15.695 -15.09 0.00803248 1300 4 1 4 [+] picture button
CBG22310 ENSCBRT00000003924 unc-31 encodes a pleckstrin homology (PH) domain-containing protein orthologous to human calcium-dependent activator protein for secretion (CADPS, OMIM:604667). UNC-31 functions in post-docking calcium-regulated dense-core vesicle fusion that is required for egg laying, locomotion, pharyngeal pumping, and recovery from the dauer larval stage. in addition, UNC-31 functions in the insulin receptor signaling pathway that regulates adult life span where it may control Ca[2+]-regulated secretion of an insulin-like ligand. [Source: WormBase]unc-31 encodes a pleckstrin homology (PH) domain-containing protein orthologous to human calcium-dependent activator protein for secretion (CADPS, OMIM:604667). UNC-31 functions in post-docking calcium-regulated dense-core vesicle fusion that is required for egg laying, locomotion, pharyngeal pumping, and recovery from the dauer larval stage. in addition, UNC-31 functions in the insulin receptor signaling pathway that regulates adult life span where it may control Ca[2+]-regulated secretion of an insulin-like ligand. [Source: WormBase] BY ORTHOLOGY TO:ZK897.1
17.9732 -27.27 0.00804847 1300 4 1 4 [+] picture button
CBG17272 ENSCBRT00000001235 T04F8.6 [Source:RefSeq_peptide;Acc:NP_509950]T04F8.6 [Source:RefSeq_peptide;Acc:NP_509950] BY ORTHOLOGY TO:T04F8.6
15.7389 -18.06 0.0083567 1300 5 2 6 [+] picture button

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