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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-67

221 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG21225 ENSCBRT00000000864 lis-1 encodes an ortholog of human LIS1, which when mutated leads to lissencephaly (OMIM:247200). it also encodes an ortholog of the Aspergillus nidulans nudF, which mediates nuclear migration along Aspergillus hyphae. [Source: WormBase]lis-1 encodes an ortholog of human LIS1, which when mutated leads to lissencephaly (OMIM:247200). it also encodes an ortholog of the Aspergillus nidulans nudF, which mediates nuclear migration along Aspergillus hyphae. [Source: WormBase] BY ORTHOLOGY TO:T03F6.5
16.398 -21.39 4.28061e-06 1300 5 2 7 [+] picture button
CBG08376 ENSCBRT00000013051 Riboflavin kinase (EC 2.7.1.26) (ATP:riboflavin 5'-phosphotransferase) (Flavokinase). [Source:Uniprot/SWISSPROT;Acc:Q969G6]Riboflavin kinase (EC 2.7.1.26) (ATP:riboflavin 5'-phosphotransferase) (Flavokinase). [Source:Uniprot/SWISSPROT;Acc:Q969G6] BY ORTHOLOGY TO:ENSORLT00000007232
17.8106 -23.46 8.19089e-05 1300 2 2 2 [+] picture button
CBG23298 ENSCBRT00000012346 rap GTPase-activating proteinrap GTPase-activating protein BY ORTHOLOGY TO:AAEL002206-RA
16.0328 -18.67 0.000253795 1300 9 2 11 [+] picture button
CBG12232 ENSCBRT00000013234 fkh-10 encodes one of 15 forkhead transcriptional regulators encoded by the C. elegans genome. by homology, FKH-10 is predicted to function as a transcription factor that regulates gene expression during development. however, as loss of fkh-10 activity via RNA-mediated interference (RNAi) does not result in any obvious abnormalities, the precise role of FKH-10 in C. elegans development and/or behavior is not yet known. nevertheless, reporter gene studies indicate that throughout larval and adult stages, fkh-10 expression is detected almost exclusively in six pairs of neuronal nuclei near the terminal bulb of the pharynx, suggesting that FKH-10 may have a specific function in neuronal differentiation. [Source: WormBase]fkh-10 encodes one of 15 forkhead transcriptional regulators encoded by the C. elegans genome. by homology, FKH-10 is predicted to function as a transcription factor that regulates gene expression during development. however, as loss of fkh-10 activity via RNA-mediated interference (RNAi) does not result in any obvious abnormalities, the precise role of FKH-10 in C. elegans development and/or behavior is not yet known. nevertheless, reporter gene studies indicate that throughout larval and adult stages, fkh-10 expression is detected almost exclusively in six pairs of neuronal nuclei near the terminal bulb of the pharynx, suggesting that FKH-10 may have a specific function in neuronal differentiation. [Source: WormBase] BY ORTHOLOGY TO:C25A1.2
17.7942 -27.41 0.000290811 1300 3 2 4 [+] picture button
CBG06153 ENSCBRT00000008344 C10C6.2 encodes a G-protein-coupled receptor for the FMRFamide-related peptides (FaRPs) encoded by flp-15. C10C6.2 is primarily coupled to Gi/Go proteins, since C10C6.2 signalling is blocked by pertussis toxin. because of its link to Gi/Go proteins, C10C6.2 is expected to be inhibitory [Source: WormBase]C10C6.2 encodes a G-protein-coupled receptor for the FMRFamide-related peptides (FaRPs) encoded by flp-15. C10C6.2 is primarily coupled to Gi/Go proteins, since C10C6.2 signalling is blocked by pertussis toxin. because of its link to Gi/Go proteins, C10C6.2 is expected to be inhibitory [Source: WormBase] BY ORTHOLOGY TO:C10C6.2
15.8648 -23.08 0.000554744 1300 4 2 5 [+] picture button
CBG14624 ENSCBRT00000003218 T03G11.4 [Source:RefSeq_peptide;Acc:NP_508877]T03G11.4 [Source:RefSeq_peptide;Acc:NP_508877] BY ORTHOLOGY TO:T03G11.4
15.5229 -18.88 0.000567623 1300 6 2 6 [+] picture button
CBG22233 ENSCBRT00000003696 solute carrier family 35, member F5 [Source:RefSeq_peptide;Acc:NP_079457]solute carrier family 35, member F5 [Source:RefSeq_peptide;Acc:NP_079457] BY ORTHOLOGY TO:ENSPTRT00000023003
15.5411 -19.57 0.000637175 1300 3 1 3 [+] picture button
CBG18029 ENSCBRT00000003078 Protein neurobeachin (Protein rugose) (A-kinase anchor protein 550) (AKAP 550) (dAKAP550). [Source:Uniprot/SWISSPROT;Acc:Q9W4E2]Protein neurobeachin (Protein rugose) (A-kinase anchor protein 550) (AKAP 550) (dAKAP550). [Source:Uniprot/SWISSPROT;Acc:Q9W4E2] BY ORTHOLOGY TO:CG6775-RA
15.4849 -15.42 0.000683732 1300 4 1 4 [+] picture button
CBG09249 ENSCBRT00000006264 F17A9.4 [Source:RefSeq_peptide;Acc:NP_504578]F17A9.4 [Source:RefSeq_peptide;Acc:NP_504578] BY ORTHOLOGY TO:F17A9.4
15.0853 -19.35 0.000936178 1300 5 2 4 [+] picture button
CBG17721 ENSCBRT00000000165 F57H12.4 [Source:RefSeq_peptide;Acc:NP_501332]F57H12.4 [Source:RefSeq_peptide;Acc:NP_501332] BY ORTHOLOGY TO:F57H12.4
16.6213 -25.82 0.000954531 1300 3 1 2 [+] picture button
CBG05711 ENSCBRT00000009192 T05A12.3 [Source:RefSeq_peptide;Acc:NP_501059]T05A12.3 [Source:RefSeq_peptide;Acc:NP_501059] BY ORTHOLOGY TO:T05A12.3
15.2177 -18.47 0.00111139 1300 1 1 1 [+] picture button
CBG15944 ENSCBRT00000014225 rab-6.2 encodes a small, monomeric Rab GTPase that is most closely related to the Drosophila Rab6 and mammalian Rab6a GTPases. by homology, RAB-6.2 is predicted to function as a membrane-associated GTPase required for intracellular vesicular trafficking and for regulation of endo- and exocytosis. however, as loss of rab-6.2 function via RNA-mediated interference (RNAi) does not result in any obvious abnormalities, the precise role of RAB-6.2 in C. elegans development and/or behavior is not yet known. [Source: WormBase]rab-6.2 encodes a small, monomeric Rab GTPase that is most closely related to the Drosophila Rab6 and mammalian Rab6a GTPases. by homology, RAB-6.2 is predicted to function as a membrane-associated GTPase required for intracellular vesicular trafficking and for regulation of endo- and exocytosis. however, as loss of rab-6.2 function via RNA-mediated interference (RNAi) does not result in any obvious abnormalities, the precise role of RAB-6.2 in C. elegans development and/or behavior is not yet known. [Source: WormBase] BY ORTHOLOGY TO:T25G12.4
15.2188 -13.6 0.00113271 1300 8 2 8 [+] picture button
CBG16521 ENSCBRT00000014606 R144.2a [Source:RefSeq_peptide;Acc:NP_498068]R144.2a [Source:RefSeq_peptide;Acc:NP_498068] BY ORTHOLOGY TO:R144.2a
15.0853 -19.12 0.00126903 1300 2 1 2 [+] picture button
CBG17780 ENSCBRT00000000206 F18A12.1 encodes a neprilysin. neprilysins are thermolysin-like zinc metallopeptidases, found on the outer surface of animal cells, that negatively regulate small signalling peptides (e.g., enkephalin, tachykinin, insulin, and natriuretic peptides) by cleaving them. F18A12.1 has no clear orthologs in other organisms. [Source: WormBase]F18A12.1 encodes a neprilysin. neprilysins are thermolysin-like zinc metallopeptidases, found on the outer surface of animal cells, that negatively regulate small signalling peptides (e.g., enkephalin, tachykinin, insulin, and natriuretic peptides) by cleaving them. F18A12.1 has no clear orthologs in other organisms. [Source: WormBase] BY ORTHOLOGY TO:F18A12.1
15.6019 -21.24 0.00130877 1300 3 1 4 [+] picture button
CBG18394 ENSCBRT00000001713 Probable ATP-dependent RNA helicase DDX11 (EC 3.6.1.-) (DEAD/H box protein 11) (CHL1 homolog) (Keratinocyte growth factor-regulated gene 2 protein) (KRG-2). [Source:Uniprot/SWISSPROT;Acc:Q96FC9]Probable ATP-dependent RNA helicase DDX11 (EC 3.6.1.-) (DEAD/H box protein 11) (CHL1 homolog) (Keratinocyte growth factor-regulated gene 2 protein) (KRG-2). [Source:Uniprot/SWISSPROT;Acc:Q96FC9] BY ORTHOLOGY TO:ENSBTAT00000042808
15.3681 -20.25 0.00140242 1300 6 1 5 [+] picture button
CBG09088 ENSCBRT00000008332 Golgin 45 (Basic leucine zipper nuclear factor 1) (JEM-1) (p45 basic leucine-zipper nuclear factor). [Source:Uniprot/SWISSPROT;Acc:Q9H2G9]Golgin 45 (Basic leucine zipper nuclear factor 1) (JEM-1) (p45 basic leucine-zipper nuclear factor). [Source:Uniprot/SWISSPROT;Acc:Q9H2G9] BY ORTHOLOGY TO:ENSMMUT00000029652
15.1076 -17.93 0.00144446 1300 3 2 3 [+] picture button
CBG09500 ENSCBRT00000005981 T16G1.7 is orthologous to the human gene ALIAS DLC1~CANDIDATE TUMOR SUPPRESSOR GENE (DLEC1. OMIM:604050), which when mutated leads to disease. [Source: WormBase]T16G1.7 is orthologous to the human gene ALIAS DLC1~CANDIDATE TUMOR SUPPRESSOR GENE (DLEC1. OMIM:604050), which when mutated leads to disease. [Source: WormBase] BY ORTHOLOGY TO:T16G1.7
14.7594 -17.9 0.00145907 1300 2 1 1 [+] picture button
CBG14240 ENSCBRT00000002681 CRAL/TRIO and GOLD domain suppressor of activated Ras family member (cgr-1) [Source:RefSeq_peptide;Acc:NP_508618]CRAL/TRIO and GOLD domain suppressor of activated Ras family member (cgr-1) [Source:RefSeq_peptide;Acc:NP_508618] BY ORTHOLOGY TO:T27A10.7
14.942 -22.39 0.00167524 1300 2 1 2 [+] picture button
CBG08548 ENSCBRT00000002863 W05B10.2 [Source:RefSeq_peptide;Acc:NP_506163]W05B10.2 [Source:RefSeq_peptide;Acc:NP_506163] BY ORTHOLOGY TO:W05B10.2
14.9583 -18.51 0.00174261 1300 5 1 4 [+] picture button
CBG17684 ENSCBRT00000002259 phosphatidate cytidylyltransferasephosphatidate cytidylyltransferase BY ORTHOLOGY TO:AAEL001940-RA
14.9327 -17.4 0.00179129 1300 3 2 5 [+] picture button
CBG17612 ENSCBRT00000002152 si:ch211-103f16.1 (si:ch211-103f16.1), misc RNA [Source:RefSeq_dna;Acc:XR_028960]si:ch211-103f16.1 (si:ch211-103f16.1), misc RNA [Source:RefSeq_dna;Acc:XR_028960] BY ORTHOLOGY TO:ENSDART00000063245
14.9396 -22.32 0.00213481 1300 2 2 3 [+] picture button
CBG00713 ENSCBRT00000003138 TWiK family of potassium channels family member (twk-3) [Source:RefSeq_peptide;Acc:NP_495727]TWiK family of potassium channels family member (twk-3) [Source:RefSeq_peptide;Acc:NP_495727] BY ORTHOLOGY TO:M110.2
14.8357 -18.46 0.00219934 1300 2 1 1 [+] picture button
CBG04025 ENSCBRT00000009921 TYRosinase family member (tyr-4) [Source:RefSeq_peptide;Acc:NP_491709]TYRosinase family member (tyr-4) [Source:RefSeq_peptide;Acc:NP_491709] BY ORTHOLOGY TO:C34G6.2
14.8403 -21.29 0.0023891 1300 4 1 5 [+] picture button
CBG19851 ENSCBRT00000002414 C31H1.8 [Source:RefSeq_peptide;Acc:NP_500868]C31H1.8 [Source:RefSeq_peptide;Acc:NP_500868] BY ORTHOLOGY TO:C31H1.8
16.2347 -21.67 0.00241473 1300 6 1 5 [+] picture button
CBG01602 ENSCBRT00000005497 F17E9.8 [Source:RefSeq_peptide;Acc:NP_501410]F17E9.8 [Source:RefSeq_peptide;Acc:NP_501410] BY ORTHOLOGY TO:F17E9.8
14.8647 -15.88 0.00255341 1300 5 1 5 [+] picture button
CBG09489 ENSCBRT00000005991 R186.7 [Source:RefSeq_peptide;Acc:NP_506247]R186.7 [Source:RefSeq_peptide;Acc:NP_506247] BY ORTHOLOGY TO:R186.7
14.7852 -16.92 0.00255886 1300 2 1 2 [+] picture button
CBG05693 ENSCBRT00000005308 Y43F8C.11 [Source:RefSeq_peptide;Acc:NP_507811]Y43F8C.11 [Source:RefSeq_peptide;Acc:NP_507811] BY ORTHOLOGY TO:Y43F8C.11
14.7365 -16.6 0.00259225 1300 3 1 3 [+] picture button
CBG18196 ENSCBRT00000003397 F-box protein 45 [Source:MarkerSymbol;Acc:MGI:2447775]F-box protein 45 [Source:MarkerSymbol;Acc:MGI:2447775] BY ORTHOLOGY TO:ENSRNOT00000002391
17.6723 -16.39 0.0027156 1300 6 1 8 [+] picture button
CBG03519 ENSCBRT00000006215 CG1845-PA [Source:RefSeq_peptide;Acc:NP_610266]CG1845-PA [Source:RefSeq_peptide;Acc:NP_610266] BY ORTHOLOGY TO:CG1845-RA
17.661 -30.16 0.00274674 1300 3 1 4 [+] picture button
CBG06260 ENSCBRT00000007068 Serpentine Receptor, class E (epsilon) family member (sre-14) [Source:RefSeq_peptide;Acc:NP_502328]Serpentine Receptor, class E (epsilon) family member (sre-14) [Source:RefSeq_peptide;Acc:NP_502328] BY ORTHOLOGY TO:C42C1.1
16.0415 -21.19 0.0030339 1300 5 2 5 [+] picture button
CBG00760 ENSCBRT00000004036 C01B7.5 [Source:RefSeq_peptide;Acc:NP_505266]C01B7.5 [Source:RefSeq_peptide;Acc:NP_505266] BY ORTHOLOGY TO:C01B7.5
17.5146 -22.45 0.00318198 1300 2 1 2 [+] picture button
CBG22799 ENSCBRT00000004263 Temporarily Assigned Gene name family member (tag-233) [Source:RefSeq_peptide;Acc:NP_001024514]Temporarily Assigned Gene name family member (tag-233) [Source:RefSeq_peptide;Acc:NP_001024514] BY ORTHOLOGY TO:D2021.2a
14.6024 -14.29 0.00321179 1300 2 1 2 [+] picture button
CBG07649 ENSCBRT00000010628 F20D1.7 [Source:RefSeq_peptide;Acc:NP_510491]F20D1.7 [Source:RefSeq_peptide;Acc:NP_510491] BY ORTHOLOGY TO:F20D1.7
15.0966 -17.09 0.00334663 1300 5 1 8 [+] picture button
CBG09301 ENSCBRT00000006313 C04E6.8 [Source:RefSeq_peptide;Acc:NP_504533]C04E6.8 [Source:RefSeq_peptide;Acc:NP_504533] BY ORTHOLOGY TO:C04E6.8
15.0841 -15.93 0.00342122 1300 5 1 4 [+] picture button
CBG00086 ENSCBRT00000001583 P-GlycoProtein related family member (pgp-12) [Source:RefSeq_peptide;Acc:NP_510126]P-GlycoProtein related family member (pgp-12) [Source:RefSeq_peptide;Acc:NP_510126] BY ORTHOLOGY TO:F22E10.1
14.5883 -18.07 0.00348478 1300 2 2 2 [+] picture button
CBG07052 ENSCBRT00000012419 Valacyclovir hydrolase precursor (EC 3.1.-.-) (VACVase) (Biphenyl hydrolase-like protein) (Biphenyl hydrolase-related protein) (Bph-rp) (Breast epithelial mucin-associated antigen) (MCNAA). [Source:Uniprot/SWISSPROT;Acc:Q86WA6]Valacyclovir hydrolase precursor (EC 3.1.-.-) (VACVase) (Biphenyl hydrolase-like protein) (Biphenyl hydrolase-related protein) (Bph-rp) (Breast epithelial mucin-associated antigen) (MCNAA). [Source:Uniprot/SWISSPROT;Acc:Q86WA6] BY ORTHOLOGY TO:ENSORLT00000015962
15.3408 -18.93 0.00367446 1300 6 1 5 [+] picture button
CBG05852 ENSCBRT00000009042 Mob3B protein, putativeMob3B protein, putative BY ORTHOLOGY TO:AAEL007325-RA
14.6373 -15.43 0.00375 1300 4 1 4 [+] picture button
CBG15881 ENSCBRT00000011070 Nuclear hormone receptor family member nhr-218. [Source:Uniprot/SWISSPROT;Acc:O18086]Nuclear hormone receptor family member nhr-218. [Source:Uniprot/SWISSPROT;Acc:O18086] BY ORTHOLOGY TO:T13F3.2
14.2118 -17.41 0.00411843 1300 4 1 3 [+] picture button
CBG03564 ENSCBRT00000006619 Y111B2A.19 [Source:RefSeq_peptide;Acc:NP_499650]Y111B2A.19 [Source:RefSeq_peptide;Acc:NP_499650] BY ORTHOLOGY TO:Y111B2A.19
17.1957 -29.85 0.00438292 1300 3 1 3 [+] picture button
CBG07383 ENSCBRT00000011824 K11E4.1 [Source:RefSeq_peptide;Acc:NP_510294]K11E4.1 [Source:RefSeq_peptide;Acc:NP_510294] BY ORTHOLOGY TO:K11E4.1
17.1418 -20.23 0.00462652 1300 3 1 3 [+] picture button
CBG02113 ENSCBRT00000004186 Tetratricopeptide repeat protein 15 (TPR repeat protein 15). [Source:Uniprot/SWISSPROT;Acc:Q8WVT3]Tetratricopeptide repeat protein 15 (TPR repeat protein 15). [Source:Uniprot/SWISSPROT;Acc:Q8WVT3] BY ORTHOLOGY TO:SINFRUT00000129838
14.4083 -14.36 0.00463281 1300 5 1 5 [+] picture button
CBG01757 ENSCBRT00000005624 Y45F10A.3 [Source:RefSeq_peptide;Acc:NP_502605]Y45F10A.3 [Source:RefSeq_peptide;Acc:NP_502605] BY ORTHOLOGY TO:Y45F10A.3
16.6652 -21.53 0.00464868 1300 4 1 3 [+] picture button
CBG10768 ENSCBRT00000012560 Sperm Specific Transcript family member (sst-20) [Source:RefSeq_peptide;Acc:NP_491498]Sperm Specific Transcript family member (sst-20) [Source:RefSeq_peptide;Acc:NP_491498] BY ORTHOLOGY TO:F54C1.9
17.1242 -21.48 0.00470921 1300 4 1 5 [+] picture button
CBG09488 ENSCBRT00000005996 SHaW family of potassium channels family member (shw-3) [Source:RefSeq_peptide;Acc:NP_506248]SHaW family of potassium channels family member (shw-3) [Source:RefSeq_peptide;Acc:NP_506248] BY ORTHOLOGY TO:R186.5
14.4953 -14.65 0.00473421 1300 2 1 2 [+] picture button
CBG03056 ENSCBRT00000007011 M28.1 [Source:RefSeq_peptide;Acc:NP_496293]M28.1 [Source:RefSeq_peptide;Acc:NP_496293] BY ORTHOLOGY TO:M28.1
17.0446 -15.05 0.00510065 1300 7 1 7 [+] picture button
CBG09266 ENSCBRT00000006280 AP-1 CG5864-PA [Source:RefSeq_peptide;Acc:NP_651198]AP-1 CG5864-PA [Source:RefSeq_peptide;Acc:NP_651198] BY ORTHOLOGY TO:CG5864-RA
14.3987 -19.1 0.00511228 1300 2 1 3 [+] picture button
CBG14767 ENSCBRT00000006762 2-hydroxyacid dehydrogenase2-hydroxyacid dehydrogenase BY ORTHOLOGY TO:AAEL005400-RA
14.3987 -18.69 0.00526231 1300 3 1 3 [+] picture button
CBG12175 ENSCBRT00000013230 C18E3.1 [Source:RefSeq_peptide;Acc:NP_491330]C18E3.1 [Source:RefSeq_peptide;Acc:NP_491330] BY ORTHOLOGY TO:C18E3.1
17.0078 -19.96 0.0052921 1300 3 1 3 [+] picture button
CBG10839 ENSCBRT00000001393 T14E8.1b [Source:RefSeq_peptide;Acc:NP_509105]T14E8.1b [Source:RefSeq_peptide;Acc:NP_509105] BY ORTHOLOGY TO:T14E8.1a
14.504 -21 0.00628485 1300 5 2 6 [+] picture button
CBG15296 ENSCBRT00000009570 3-hydroxy-3-methylglutaryl-Coenzyme A reductase [Source:MarkerSymbol;Acc:MGI:96159]3-hydroxy-3-methylglutaryl-Coenzyme A reductase [Source:MarkerSymbol;Acc:MGI:96159] BY ORTHOLOGY TO:ENSMUST00000022176
14.2375 -12.2 0.00636918 1300 4 2 6 [+] picture button

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