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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-64

197 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG16137 ENSCBRT00000012576 Tubulin beta-4 chain (Beta-4 tubulin). [Source:Uniprot/SWISSPROT;Acc:P41937]Tubulin beta-4 chain (Beta-4 tubulin). [Source:Uniprot/SWISSPROT;Acc:P41937] BY ORTHOLOGY TO:B0272.1
15.6402 -17.72 3.3019e-05 1300 3 1 4 [+] picture button
CBG13287 ENSCBRT00000001051 Y47D3B.4 [Source:RefSeq_peptide;Acc:NP_499469]Y47D3B.4 [Source:RefSeq_peptide;Acc:NP_499469] BY ORTHOLOGY TO:Y47D3B.4
16.464 -27.31 0.000176515 1300 4 1 6 [+] picture button
CBG13885 ENSCBRT00000013661 C54E4.4 [Source:RefSeq_peptide;Acc:NP_500172]C54E4.4 [Source:RefSeq_peptide;Acc:NP_500172] BY ORTHOLOGY TO:C54E4.4
15.6445 -22.09 0.000621822 1300 4 1 6 [+] picture button
CBG24228 ENSCBRT00000005499 Serpentine Receptor, class X family member (srx-120) [Source:RefSeq_peptide;Acc:NP_496677]Serpentine Receptor, class X family member (srx-120) [Source:RefSeq_peptide;Acc:NP_496677] BY ORTHOLOGY TO:F49C5.2
16.3391 -20.09 0.000630629 1300 6 1 9 [+] picture button
CBG21774 ENSCBRT00000004669 fem-3 encodes a novel protein that promotes male development in all tissues. [Source: WormBase]fem-3 encodes a novel protein that promotes male development in all tissues. [Source: WormBase] BY ORTHOLOGY TO:C01F6.4
15.7715 -18.81 0.000954351 1300 2 2 6 [+] picture button
CBG12065 ENSCBRT00000011660 RIKEN cDNA 4921504I05 gene [Source:MarkerSymbol;Acc:MGI:1913957]RIKEN cDNA 4921504I05 gene [Source:MarkerSymbol;Acc:MGI:1913957] BY ORTHOLOGY TO:ENSMUST00000068235
16.2182 -12.12 0.00108578 1300 8 2 10 [+] picture button
CBG09353 ENSCBRT00000006373 acy-4 encodes an adenylate cyclase most similar to vertebrate type V and type VI adenylate cyclases. by homology, ACY-4 is a predicted plasma membrane protein that catalyzes the conversion of ATP to cyclic AMP, a key second messenger in intracellular signaling. as loss of acy-4 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of ACY-4 in C. elegans development and/or behavior is not yet known. [Source: WormBase]acy-4 encodes an adenylate cyclase most similar to vertebrate type V and type VI adenylate cyclases. by homology, ACY-4 is a predicted plasma membrane protein that catalyzes the conversion of ATP to cyclic AMP, a key second messenger in intracellular signaling. as loss of acy-4 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of ACY-4 in C. elegans development and/or behavior is not yet known. [Source: WormBase] BY ORTHOLOGY TO:T01C2.1
15.5836 -22.16 0.00150786 1300 4 2 5 [+] picture button
CBG07597 ENSCBRT00000011123 mbk-1 encodes a putative dual-specificity kinase (predicted to have both serine/threonine and tyrosine substrates) that is orthologous to Drosophila MINIBRAIN and mammalian DYRK1A/MnbK and that has a glutamine/asparagine-rich domain. MBK-1 is found in most or all nuclei, is dispensable for viability, and perturbs olfaction in AWC when overexpressed. [Source: WormBase]mbk-1 encodes a putative dual-specificity kinase (predicted to have both serine/threonine and tyrosine substrates) that is orthologous to Drosophila MINIBRAIN and mammalian DYRK1A/MnbK and that has a glutamine/asparagine-rich domain. MBK-1 is found in most or all nuclei, is dispensable for viability, and perturbs olfaction in AWC when overexpressed. [Source: WormBase] BY ORTHOLOGY TO:T04C10.1
15.9878 -19.71 0.00153645 1300 10 1 14 [+] picture button
CBG15996 ENSCBRT00000014248 F31B9.1 [Source:RefSeq_peptide;Acc:NP_510612]F31B9.1 [Source:RefSeq_peptide;Acc:NP_510612] BY ORTHOLOGY TO:F31B9.1
16.3239 -21.14 0.00163135 1300 4 1 6 [+] picture button
CBG02095 ENSCBRT00000004173 syg-1 encodes a novel transmembrane protein that is a member of the immunoglobulin superfamily of proteins. during larval development, SYG-1 activity is required cell autonomously within the HSNL neuron to specify proper synaptic specificity with its targets, such as vulval muscles and the VC neuron. in regulating synapse formation, SYG-1 acts as a receptor for a second immunoglobulin superfamily protein, SYG-2, a synaptic guidepost protein that interacts with SYG-1 and whose activity is essential for proper SYG-1 localization in HSNL. expression of a SYG-1::GFP reporter fusion in HSNL under the control of the unc-86 promoter reveals that SYG-1 localizes to axons and accumulates at future sites of synaptic vesicle clustering, while expression under an endogenous reporter reveals weak expression in head motorneurons, occasionally in HSN neurons, and in other cells in the vulval region. [Source: WormBase]syg-1 encodes a novel transmembrane protein that is a member of the immunoglobulin superfamily of proteins. during larval development, SYG-1 activity is required cell autonomously within the HSNL neuron to specify proper synaptic specificity with its targets, such as vulval muscles and the VC neuron. in regulating synapse formation, SYG-1 acts as a receptor for a second immunoglobulin superfamily protein, SYG-2, a synaptic guidepost protein that interacts with SYG-1 and whose activity is essential for proper SYG-1 localization in HSNL. expression of a SYG-1::GFP reporter fusion in HSNL under the control of the unc-86 promoter reveals that SYG-1 localizes to axons and accumulates at future sites of synaptic vesicle clustering, while expression under an endogenous reporter reveals weak expression in head motorneurons, occasionally in HSN neurons, and in other cells in the vulval region. [Source: WormBase] BY ORTHOLOGY TO:K02E10.8
15.556 -17.77 0.00164434 1300 7 2 12 [+] picture button
CBG23614 ENSCBRT00000001534 F13A2.4 [Source:RefSeq_peptide;Acc:NP_504210]F13A2.4 [Source:RefSeq_peptide;Acc:NP_504210] BY ORTHOLOGY TO:F13A2.4
15.4377 -15.93 0.00166833 1300 4 1 6 [+] picture button
CBG15559 ENSCBRT00000010701 Y62H9A.10 [Source:RefSeq_peptide;Acc:NP_509991]Y62H9A.10 [Source:RefSeq_peptide;Acc:NP_509991] BY ORTHOLOGY TO:Y62H9A.10
16.3615 -14.47 0.00184348 1300 3 1 5 [+] picture button
CBG23203 ENSCBRT00000012157 F57B7.2 [Source:RefSeq_peptide;Acc:NP_505900]F57B7.2 [Source:RefSeq_peptide;Acc:NP_505900] BY ORTHOLOGY TO:F57B7.2
15.8166 -18.26 0.00205283 1300 7 2 14 [+] picture button
CBG17688 ENSCBRT00000002267 conserved hypothetical proteinconserved hypothetical protein BY ORTHOLOGY TO:AAEL005846-RA
15.9772 -16.47 0.00226008 1300 5 2 9 [+] picture button
CBG07186 ENSCBRT00000012229 aat-7 encodes a predicted amino acid transporter catalytic subunit. unlike catalytic subunits in other organisms, however, AAT-7 does not contain the highly conserved cysteine residue known to facilitate covalent interaction with a glycoprotein subunit, suggesting that AAT-7 does not require this residue for heterodimer formation or alternatively, does not require the glycoprotein subunit for function. [Source: WormBase]aat-7 encodes a predicted amino acid transporter catalytic subunit. unlike catalytic subunits in other organisms, however, AAT-7 does not contain the highly conserved cysteine residue known to facilitate covalent interaction with a glycoprotein subunit, suggesting that AAT-7 does not require this residue for heterodimer formation or alternatively, does not require the glycoprotein subunit for function. [Source: WormBase] BY ORTHOLOGY TO:F54D12.3
15.3143 -26.3 0.00235907 1300 7 2 8 [+] picture button
CBG05119 ENSCBRT00000010290 Y65B4BR.1 [Source:RefSeq_peptide;Acc:NP_490753]Y65B4BR.1 [Source:RefSeq_peptide;Acc:NP_490753] BY ORTHOLOGY TO:Y65B4BR.1
15.0085 -15.52 0.00264204 1300 4 1 4 [+] picture button
CBG14733 ENSCBRT00000006784 W01C8.5 [Source:RefSeq_peptide;Acc:NP_508959]W01C8.5 [Source:RefSeq_peptide;Acc:NP_508959] BY ORTHOLOGY TO:W01C8.5
15.6933 -17.06 0.00267523 1300 3 1 8 [+] picture button
CBG19042 ENSCBRT00000014049 unc-68 encodes a ryanodine receptor ortholog that is expressed in body-wall muscle cells and is required for normal body tension and locomotion. unc-68 mutants are flaccid, sluggish, and resistant to ryanodine, but have normal muscle ultrastructure. UNC-68 is dispensable for excitation-contraction coupling itself, but may amplify its calcium signals. the unc-68/kra-1(kh30) mutation is an S1444N substitution at a putative protein kinase C phosphorylation site. UNC-68 reduced unc-103(sy557)-induced spicule protraction by one half. unc-68 is orthologous to the human genes RYR1 (OMIM:180901, mutated in malignant hyperthermia and central core disease), RYR2 (OMIM:180902, mutated in stress-induced polymorphic ventricular tachycardia), and RYR3 (OMIM:180903). [Source: WormBase]unc-68 encodes a ryanodine receptor ortholog that is expressed in body-wall muscle cells and is required for normal body tension and locomotion. unc-68 mutants are flaccid, sluggish, and resistant to ryanodine, but have normal muscle ultrastructure. UNC-68 is dispensable for excitation-contraction coupling itself, but may amplify its calcium signals. the unc-68/kra-1(kh30) mutation is an S1444N substitution at a putative protein kinase C phosphorylation site. UNC-68 reduced unc-103(sy557)-induced spicule protraction by one half. unc-68 is orthologous to the human genes RYR1 (OMIM:180901, mutated in malignant hyperthermia and central core disease), RYR2 (OMIM:180902, mutated in stress-induced polymorphic ventricular tachycardia), and RYR3 (OMIM:180903). [Source: WormBase] BY ORTHOLOGY TO:K11C4.5
15.4285 -15.1 0.00268747 1300 4 2 8 [+] picture button
CBG10898 ENSCBRT00000001278 RGD1304878 protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q5EBA2]RGD1304878 protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q5EBA2] BY ORTHOLOGY TO:ENSRNOT00000006131
15.8914 -23.75 0.00270158 1300 3 1 6 [+] picture button
CBG00532 ENSCBRT00000003070 T22C8.5 [Source:RefSeq_peptide;Acc:NP_495833]T22C8.5 [Source:RefSeq_peptide;Acc:NP_495833] BY ORTHOLOGY TO:T22C8.5
15.7082 -15.71 0.00308448 1300 6 1 7 [+] picture button
CBG00135 ENSCBRT00000001523 small calcium-binding mitochondrial carrier, putativesmall calcium-binding mitochondrial carrier, putative BY ORTHOLOGY TO:AAEL004589-RA
15.2361 -14.98 0.00352695 1300 2 1 7 [+] picture button
CBG09945 ENSCBRT00000008110 Transthyretin-like protein K03H1.3 precursor. [Source:Uniprot/SWISSPROT;Acc:P34499]Transthyretin-like protein K03H1.3 precursor. [Source:Uniprot/SWISSPROT;Acc:P34499] BY ORTHOLOGY TO:K03H1.3
15.3406 -17.69 0.00354108 1300 5 1 5 [+] picture button
CBG22761 ENSCBRT00000004243 The ced-8 gene encodes a homolog of the human putative membrane transporter XK. ced-8 is required for apoptosis to occur with normal speed during embryonic development. [Source: WormBase]The ced-8 gene encodes a homolog of the human putative membrane transporter XK. ced-8 is required for apoptosis to occur with normal speed during embryonic development. [Source: WormBase] BY ORTHOLOGY TO:F08F1.5
15.078 -18.89 0.00373657 1300 7 1 8 [+] picture button
CBG07595 ENSCBRT00000011126 T04C10.3 [Source:RefSeq_peptide;Acc:NP_510457]T04C10.3 [Source:RefSeq_peptide;Acc:NP_510457] BY ORTHOLOGY TO:T04C10.3
15.7821 -17.18 0.00400044 1300 7 1 9 [+] picture button
CBG03383 ENSCBRT00000007145 sarcolemma associated protein [Source:MarkerSymbol;Acc:MGI:1933549]sarcolemma associated protein [Source:MarkerSymbol;Acc:MGI:1933549] BY ORTHOLOGY TO:ENSMUST00000090359
15.0403 -15.02 0.00401797 1300 1 1 3 [+] picture button
CBG14158 ENSCBRT00000002584 ral guanine nucleotide exchange factor,ral guanine nucleotide exchange factor, BY ORTHOLOGY TO:AAEL000858-RA
15.2203 -17.95 0.00413181 1300 1 2 4 [+] picture button
ENSCBRT00000006628 W03G1.2 [Source:RefSeq_peptide;Acc:NP_499941]W03G1.2 [Source:RefSeq_peptide;Acc:NP_499941] BY ORTHOLOGY TO:W03G1.2
15.1421 -19.23 0.00432033 1300 3 1 3 [+] picture button
CBG05178 ENSCBRT00000002642 W03A5.5 [Source:RefSeq_peptide;Acc:NP_498157]W03A5.5 [Source:RefSeq_peptide;Acc:NP_498157] BY ORTHOLOGY TO:W03A5.5
15.1015 -19.09 0.00480515 1300 3 1 6 [+] picture button
CBG01105 ENSCBRT00000005254 W07B8.3 [Source:RefSeq_peptide;Acc:NP_503381]W07B8.3 [Source:RefSeq_peptide;Acc:NP_503381] BY ORTHOLOGY TO:W07B8.3
17.5508 -26.86 0.00506961 1300 4 1 6 [+] picture button
CBG14523 ENSCBRT00000003462 K02G10.5 [Source:RefSeq_peptide;Acc:NP_508802]K02G10.5 [Source:RefSeq_peptide;Acc:NP_508802] BY ORTHOLOGY TO:K02G10.5
15.3313 -22.57 0.00559862 1300 4 1 3 [+] picture button
CBG23650 ENSCBRT00000002702 E03H12.2 [Source:RefSeq_peptide;Acc:NP_500693]E03H12.2 [Source:RefSeq_peptide;Acc:NP_500693] BY ORTHOLOGY TO:E03H12.2
14.8788 -10.17 0.00567574 1300 1 2 2 [+] picture button
CBG02173 ENSCBRT00000004200 Fibroblast growth factor receptor-like 1 precursor (FGF receptor-like protein 1) (Fibroblast growth factor receptor 5) (FGFR-like protein) (FGF homologous factor receptor). [Source:Uniprot/SWISSPROT;Acc:Q8N441]Fibroblast growth factor receptor-like 1 precursor (FGF receptor-like protein 1) (Fibroblast growth factor receptor 5) (FGFR-like protein) (FGF homologous factor receptor). [Source:Uniprot/SWISSPROT;Acc:Q8N441] BY ORTHOLOGY TO:ENSOANT00000000414
14.8914 -19.81 0.00580476 1300 4 2 7 [+] picture button
CBG16500 ENSCBRT00000014620 F11H8.2 [Source:RefSeq_peptide;Acc:NP_498532]F11H8.2 [Source:RefSeq_peptide;Acc:NP_498532] BY ORTHOLOGY TO:F11H8.2
14.8463 -13.04 0.00582538 1300 5 2 7 [+] picture button
CBG19035 ENSCBRT00000014070 gpa-10 encodes a member of the G protein alpha subunit family of heterotrimeric GTPases. it is expressed in ADF, ASI, ASJ, ALN, CAN, LUA, and the spermatheca. [Source: WormBase]gpa-10 encodes a member of the G protein alpha subunit family of heterotrimeric GTPases. it is expressed in ADF, ASI, ASJ, ALN, CAN, LUA, and the spermatheca. [Source: WormBase] BY ORTHOLOGY TO:C55H1.2
14.8324 -15.4 0.00598065 1300 4 1 8 [+] picture button
CBG14717 ENSCBRT00000006788 Serpentine Receptor, class V family member (srv-7) [Source:RefSeq_peptide;Acc:NP_508950]Serpentine Receptor, class V family member (srv-7) [Source:RefSeq_peptide;Acc:NP_508950] BY ORTHOLOGY TO:T22B7.5
14.7937 -10.41 0.00643615 1300 5 1 10 [+] picture button
CBG12413 ENSCBRT00000013156 F32H2.7 [Source:RefSeq_peptide;Acc:NP_492420]F32H2.7 [Source:RefSeq_peptide;Acc:NP_492420] BY ORTHOLOGY TO:F32H2.7
14.9433 -18.97 0.00704593 1300 8 2 10 [+] picture button
CBG19946 ENSCBRT00000002447 SaPosin-like Protein family member (spp-7) [Source:RefSeq_peptide;Acc:NP_500808]SaPosin-like Protein family member (spp-7) [Source:RefSeq_peptide;Acc:NP_500808] BY ORTHOLOGY TO:ZK616.9
14.8641 -21.72 0.00714684 1300 1 2 2 [+] picture button
CBG01053 ENSCBRT00000002306 Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase wee-1.3 (EC 2.7.11.1) (Myt1 kinase) (Lethal protein 37). [Source:Uniprot/SWISSPROT;Acc:O18209]Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase wee-1.3 (EC 2.7.11.1) (Myt1 kinase) (Lethal protein 37). [Source:Uniprot/SWISSPROT;Acc:O18209] BY ORTHOLOGY TO:Y53C12A.1
17.1287 -28 0.00744338 1300 3 1 7 [+] picture button
CBG20411 ENSCBRT00000003618 T28H11.7 [Source:RefSeq_peptide;Acc:NP_500703]T28H11.7 [Source:RefSeq_peptide;Acc:NP_500703] BY ORTHOLOGY TO:T28H11.7
17.1587 -22.03 0.00757474 1300 2 1 4 [+] picture button
CBG12028 ENSCBRT00000011694 SeMaPhorin related family member (smp-2) [Source:RefSeq_peptide;Acc:NP_491197]SeMaPhorin related family member (smp-2) [Source:RefSeq_peptide;Acc:NP_491197] BY ORTHOLOGY TO:D1037.2
14.7018 -16.21 0.00765148 1300 4 1 7 [+] picture button
CBG05348 ENSCBRT00000002819 F30B5.7 [Source:RefSeq_peptide;Acc:NP_500517]F30B5.7 [Source:RefSeq_peptide;Acc:NP_500517] BY ORTHOLOGY TO:F30B5.7
15.1108 -21.34 0.0084706 1300 5 1 3 [+] picture button
CBG07245 ENSCBRT00000011847 C11H1.5 [Source:RefSeq_peptide;Acc:NP_510387]C11H1.5 [Source:RefSeq_peptide;Acc:NP_510387] BY ORTHOLOGY TO:C11H1.5
14.7304 -19.42 0.0084706 1300 4 1 4 [+] picture button
CBG15473 ENSCBRT00000010767 Probable ubiquitin-conjugating enzyme E2 21 (EC 6.3.2.19) (Ubiquitin- protein ligase 21) (Ubiquitin carrier protein 21). [Source:Uniprot/SWISSPROT;Acc:P52484]Probable ubiquitin-conjugating enzyme E2 21 (EC 6.3.2.19) (Ubiquitin- protein ligase 21) (Ubiquitin carrier protein 21). [Source:Uniprot/SWISSPROT;Acc:P52484] BY ORTHOLOGY TO:C06E2.3
15.7302 -19.33 0.0084706 1300 1 1 3 [+] picture button
CBG10881 ENSCBRT00000001287 Max-binding protein MNT (Protein ROX) (Myc antagonist MNT). [Source:Uniprot/SWISSPROT;Acc:Q99583]Max-binding protein MNT (Protein ROX) (Myc antagonist MNT). [Source:Uniprot/SWISSPROT;Acc:Q99583] BY ORTHOLOGY TO:ENSOANT00000013762
14.7492 -14.81 0.00888579 1300 6 2 8 [+] picture button
CBG03810 ENSCBRT00000008662 B0379.2 [Source:RefSeq_peptide;Acc:NP_492656]B0379.2 [Source:RefSeq_peptide;Acc:NP_492656] BY ORTHOLOGY TO:B0379.2
14.6188 -17.6 0.00893525 1300 3 1 4 [+] picture button
CBG00646 ENSCBRT00000003233 F49E12.8 [Source:RefSeq_peptide;Acc:NP_495765]F49E12.8 [Source:RefSeq_peptide;Acc:NP_495765] BY ORTHOLOGY TO:F49E12.8
16.9912 -25.5 0.00898895 1300 3 2 6 [+] picture button
CBG07691 ENSCBRT00000010657 C33A11.4 [Source:RefSeq_peptide;Acc:NP_510542]C33A11.4 [Source:RefSeq_peptide;Acc:NP_510542] BY ORTHOLOGY TO:C33A11.4
16.9862 -22.46 0.00903463 1300 2 1 6 [+] picture button
CBG05909 ENSCBRT00000008991 F49E8.6 [Source:RefSeq_peptide;Acc:NP_501224]F49E8.6 [Source:RefSeq_peptide;Acc:NP_501224] BY ORTHOLOGY TO:F49E8.6
16.981 -27.93 0.00908286 1300 7 1 8 [+] picture button
CBG21257 ENSCBRT00000000767 BolA-like protein 2. [Source:Uniprot/SWISSPROT;Acc:Q9H3K6] [from human gene ENSG00000169627]BolA-like protein 2. [Source:Uniprot/SWISSPROT;Acc:Q9H3K6] [from human gene ENSG00000169627] BY ORTHOLOGY TO:ENSXETT00000028006
16.8097 -25.54 0.0108184 1300 3 1 5 [+] picture button
CBG09477 ENSCBRT00000006262 F58E6.5 [Source:RefSeq_peptide;Acc:NP_505516]F58E6.5 [Source:RefSeq_peptide;Acc:NP_505516] BY ORTHOLOGY TO:F58E6.5
16.787 -25.53 0.0110715 1300 1 1 3 [+] picture button

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