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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-62

125 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG13909 ENSCBRT00000013649 CG32344-PA [Source:RefSeq_peptide;Acc:NP_612028]CG32344-PA [Source:RefSeq_peptide;Acc:NP_612028] BY ORTHOLOGY TO:CG32344-RA
14.9149 -10.1 0.000151598 1300 8 1 6 [+] picture button
CBG21451 ENSCBRT00000002361 F43C11.6 [Source:RefSeq_peptide;Acc:NP_494247]F43C11.6 [Source:RefSeq_peptide;Acc:NP_494247] BY ORTHOLOGY TO:F43C11.6
16.8968 -15.87 0.000782681 1300 2 1 2 [+] picture button
CBG14195 ENSCBRT00000002613 ZK563.2 [Source:RefSeq_peptide;Acc:NP_508581]ZK563.2 [Source:RefSeq_peptide;Acc:NP_508581] BY ORTHOLOGY TO:ZK563.2
16.2996 -17.19 0.00103529 1300 3 1 4 [+] picture button
CBG20603 ENSCBRT00000001406 TBC domain-containing protein kinase-like protein. [Source:Uniprot/SWISSPROT;Acc:Q5F361]TBC domain-containing protein kinase-like protein. [Source:Uniprot/SWISSPROT;Acc:Q5F361] BY ORTHOLOGY TO:ENSGALT00000017190
15.9181 -12.84 0.00124232 1300 4 1 4 [+] picture button
CBG12999 ENSCBRT00000012946 F35D2.3 [Source:RefSeq_peptide;Acc:NP_495588]F35D2.3 [Source:RefSeq_peptide;Acc:NP_495588] BY ORTHOLOGY TO:F35D2.3
15.8851 -13.67 0.00138687 1300 3 1 4 [+] picture button
CBG09943 ENSCBRT00000008107 Transthyretin-like protein 1 precursor. [Source:Uniprot/SWISSPROT;Acc:P34502]Transthyretin-like protein 1 precursor. [Source:Uniprot/SWISSPROT;Acc:P34502] BY ORTHOLOGY TO:K03H1.6
15.7009 -18.91 0.00218166 1300 2 2 2 [+] picture button
CBG02375 ENSCBRT00000006648 Mesoderm development candidate 2 (Renal carcinoma antigen NY-REN-61). [Source:Uniprot/SWISSPROT;Acc:Q14696]Mesoderm development candidate 2 (Renal carcinoma antigen NY-REN-61). [Source:Uniprot/SWISSPROT;Acc:Q14696] BY ORTHOLOGY TO:ENST00000261758
17.2495 -21.81 0.00246965 1300 8 1 7 [+] picture button
CBG08348 ENSCBRT00000013000 etoposide induced 2.4 [Source:RefSeq_peptide;Acc:NP_001006316]etoposide induced 2.4 [Source:RefSeq_peptide;Acc:NP_001006316] BY ORTHOLOGY TO:ENSGALT00000001501
15.7604 -12.2 0.00289801 1300 6 1 6 [+] picture button
CBG11109 ENSCBRT00000012225 DeHydrogenases, Short chain family member (dhs-8) [Source:RefSeq_peptide;Acc:NP_001022250]DeHydrogenases, Short chain family member (dhs-8) [Source:RefSeq_peptide;Acc:NP_001022250] BY ORTHOLOGY TO:K10H10.3a
15.422 -10.44 0.00291514 1300 3 1 2 [+] picture button
ENSCBRT00000013693 F33D11.6 [Source:RefSeq_peptide;Acc:NP_491695]F33D11.6 [Source:RefSeq_peptide;Acc:NP_491695] BY ORTHOLOGY TO:F33D11.6
15.8784 -13.82 0.00313294 1300 2 1 1 [+] picture button
ENSCBRT00000005072 T11F1.8 [Source:RefSeq_peptide;Acc:NP_494409]T11F1.8 [Source:RefSeq_peptide;Acc:NP_494409] BY ORTHOLOGY TO:T11F1.8
15.3306 -16.11 0.00365084 1300 2 1 2 [+] picture button
CBG08609 ENSCBRT00000002982 F57A8.7 [Source:RefSeq_peptide;Acc:NP_505586]F57A8.7 [Source:RefSeq_peptide;Acc:NP_505586] BY ORTHOLOGY TO:F57A8.7
16.4699 -19.37 0.0038502 1300 1 1 1 [+] picture button
CBG07028 ENSCBRT00000012401 PQ-loop repeat-containing protein 2. [Source:Uniprot/SWISSPROT;Acc:Q6ZP29]PQ-loop repeat-containing protein 2. [Source:Uniprot/SWISSPROT;Acc:Q6ZP29] BY ORTHOLOGY TO:ENSCAFT00000024083
15.3737 -14.05 0.00404368 1300 4 1 4 [+] picture button
CBG23429 ENSCBRT00000011547 F55C5.4 [Source:RefSeq_peptide;Acc:NP_506080]F55C5.4 [Source:RefSeq_peptide;Acc:NP_506080] BY ORTHOLOGY TO:F55C5.4
15.1505 -15.01 0.00423634 1300 4 2 4 [+] picture button
CBG05767 ENSCBRT00000009132 ZC477.5 [Source:RefSeq_peptide;Acc:NP_501107]ZC477.5 [Source:RefSeq_peptide;Acc:NP_501107] BY ORTHOLOGY TO:ZC477.5
15.2459 -9.58 0.00425752 1300 4 1 3 [+] picture button
CBG10510 ENSCBRT00000007939 Serpentine Receptor, class W family member (srw-77) [Source:RefSeq_peptide;Acc:NP_507211]Serpentine Receptor, class W family member (srw-77) [Source:RefSeq_peptide;Acc:NP_507211] BY ORTHOLOGY TO:W06G6.8
15.1298 -7.86 0.00443889 1300 3 1 3 [+] picture button
CBG23146 ENSCBRT00000012059 GPI inositol-deacylase (EC 3.1.-.-) (hPGAP1). [Source:Uniprot/SWISSPROT;Acc:Q75T13]GPI inositol-deacylase (EC 3.1.-.-) (hPGAP1). [Source:Uniprot/SWISSPROT;Acc:Q75T13] BY ORTHOLOGY TO:ENSMMUT00000003107
15.5129 -13.93 0.00447039 1300 5 1 5 [+] picture button
CBG14540 ENSCBRT00000003411 npr-1 encodes a predicted G protein-coupled neuropeptide receptor that is homologous to the mammalian neuropeptide Y (NPY) receptor (OMIM:162641) required for regulating anxiety, food consumption, and pain sensation. in C. elegans, NPR-1 is involved in ethological variations of social behavior such as social versus solitary feeding. NPR-1 also affects some aspect of UNC-6/netrin-mediated branching of motor neurons, as strong npr-1 mutations can suppress abnormal migration of ventral nerve cord neurons induced by overexpression of UNC-6 lacking domain C. NPR-1 is expressed predominantly in the nervous system, and particularly in the AQR, PQR, and URX neurons that are exposed to the body fluid. [Source: WormBase]npr-1 encodes a predicted G protein-coupled neuropeptide receptor that is homologous to the mammalian neuropeptide Y (NPY) receptor (OMIM:162641) required for regulating anxiety, food consumption, and pain sensation. in C. elegans, NPR-1 is involved in ethological variations of social behavior such as social versus solitary feeding. NPR-1 also affects some aspect of UNC-6/netrin-mediated branching of motor neurons, as strong npr-1 mutations can suppress abnormal migration of ventral nerve cord neurons induced by overexpression of UNC-6 lacking domain C. NPR-1 is expressed predominantly in the nervous system, and particularly in the AQR, PQR, and URX neurons that are exposed to the body fluid. [Source: WormBase] BY ORTHOLOGY TO:C39E6.6
15.5719 -13.89 0.00489123 1300 2 2 3 [+] picture button
CBG21347 ENSCBRT00000000965 Nicastrin precursor. [Source:Uniprot/SWISSPROT;Acc:Q92542]Nicastrin precursor. [Source:Uniprot/SWISSPROT;Acc:Q92542] BY ORTHOLOGY TO:ENST00000294785
15.4953 -15.76 0.00489123 1300 1 2 2 [+] picture button
CBG10812 ENSCBRT00000012522 cysteine and histidine-rich domain (CHORD)-containing, zinc binding protein 1 [Source:RefSeq_peptide;Acc:NP_036256]cysteine and histidine-rich domain (CHORD)-containing, zinc binding protein 1 [Source:RefSeq_peptide;Acc:NP_036256] BY ORTHOLOGY TO:ENSMODT00000004008
15.219 -8.8 0.00515416 1300 5 1 6 [+] picture button
CBG04734 ENSCBRT00000010560 Serpentine Receptor, class E (epsilon) family member (sre-7) [Source:RefSeq_peptide;Acc:NP_506522]Serpentine Receptor, class E (epsilon) family member (sre-7) [Source:RefSeq_peptide;Acc:NP_506522] BY ORTHOLOGY TO:K02E11.2
15.1157 -11.57 0.005825 1300 1 1 1 [+] picture button
CBG12872 ENSCBRT00000013773 T22E7.2 [Source:RefSeq_peptide;Acc:NP_491675]T22E7.2 [Source:RefSeq_peptide;Acc:NP_491675] BY ORTHOLOGY TO:T22E7.2
17.2855 -15.35 0.00650873 1300 4 1 4 [+] picture button
CBG06440 ENSCBRT00000010945 fhod-2 encodes an ortholog of Drosophila DAAM and human DAAM1 (OMIM:606626). FHOD-2 enables Wnt-directed planar cell polarity. FHOD-2 is required for the fully asymmetrical division of B.a versus B.p cells, though this requirement is quantitatively weak. [Source: WormBase]fhod-2 encodes an ortholog of Drosophila DAAM and human DAAM1 (OMIM:606626). FHOD-2 enables Wnt-directed planar cell polarity. FHOD-2 is required for the fully asymmetrical division of B.a versus B.p cells, though this requirement is quantitatively weak. [Source: WormBase] BY ORTHOLOGY TO:F56E10.2
15.7492 -9.04 0.00658529 1300 2 2 2 [+] picture button
CBG08565 ENSCBRT00000002849 AH10.2 [Source:RefSeq_peptide;Acc:NP_506503]AH10.2 [Source:RefSeq_peptide;Acc:NP_506503] BY ORTHOLOGY TO:AH10.2
17.2664 -20.75 0.00665441 1300 3 1 3 [+] picture button
CBG03742 ENSCBRT00000008614 Vacuolar protein sorting-associated protein 72 homolog (Transcription factor-like 1) (Protein YL-1). [Source:Uniprot/SWISSPROT;Acc:Q15906]Vacuolar protein sorting-associated protein 72 homolog (Transcription factor-like 1) (Protein YL-1). [Source:Uniprot/SWISSPROT;Acc:Q15906] BY ORTHOLOGY TO:ENSGACT00000005149
15.2341 -14.34 0.00669031 1300 4 2 4 [+] picture button
CBG12203 ENSCBRT00000013260 E3 ubiquitin-protein ligase MARCH6 (EC 6.3.2.-) (Membrane-associated RING finger protein 6) (Membrane-associated RING-CH protein VI) (MARCH-VI) (RING finger protein 176) (Protein TEB-4) (Doa10 homolog). [Source:Uniprot/SWISSPROT;Acc:O60337]E3 ubiquitin-protein ligase MARCH6 (EC 6.3.2.-) (Membrane-associated RING finger protein 6) (Membrane-associated RING-CH protein VI) (MARCH-VI) (RING finger protein 176) (Protein TEB-4) (Doa10 homolog). [Source:Uniprot/SWISSPROT;Acc:O60337] BY ORTHOLOGY TO:ENST00000274140
17.2611 -16.1 0.00669582 1300 7 1 13 [+] picture button
CBG17667 ENSCBRT00000002228 C46A5.8 [Source:RefSeq_peptide;Acc:NP_501278]C46A5.8 [Source:RefSeq_peptide;Acc:NP_501278] BY ORTHOLOGY TO:C46A5.8
15.0481 -9.94 0.00673589 1300 6 1 7 [+] picture button
CBG03870 ENSCBRT00000008703 CTD small phosphatase-like protein (CTDSP-like) (Small C-terminal domain phosphatase 3) (Small CTD phosphatase 3) (SCP3) (Nuclear LIM interactor-interacting factor 1) (NLI-interacting factor 1) (NIF-like protein) (RBSP3) (YA22 protein) (HYA22). [Source:Uniprot/SWISSPROT;Acc:O15194]CTD small phosphatase-like protein (CTDSP-like) (Small C-terminal domain phosphatase 3) (Small CTD phosphatase 3) (SCP3) (Nuclear LIM interactor-interacting factor 1) (NLI-interacting factor 1) (NIF-like protein) (RBSP3) (YA22 protein) (HYA22). [Source:Uniprot/SWISSPROT;Acc:O15194] BY ORTHOLOGY TO:ENST00000273179
15.1055 -9.9 0.00709702 1300 2 1 2 [+] picture button
CBG21774 ENSCBRT00000004669 fem-3 encodes a novel protein that promotes male development in all tissues. [Source: WormBase]fem-3 encodes a novel protein that promotes male development in all tissues. [Source: WormBase] BY ORTHOLOGY TO:C01F6.4
15.8413 -12.95 0.00712503 1300 2 2 6 [+] picture button
CBG09781 ENSCBRT00000008054 M01F1.8b [Source:RefSeq_peptide;Acc:NP_001022689]M01F1.8b [Source:RefSeq_peptide;Acc:NP_001022689] BY ORTHOLOGY TO:M01F1.8a
15.008 -13.45 0.00733696 1300 2 1 2 [+] picture button
CBG11221 ENSCBRT00000014487 T14B4.9 [Source:RefSeq_peptide;Acc:NP_495371]T14B4.9 [Source:RefSeq_peptide;Acc:NP_495371] BY ORTHOLOGY TO:T14B4.9
17.1567 -16.07 0.00755804 1300 4 1 4 [+] picture button
CBG09481 ENSCBRT00000005998 Fatty Acid/Retinol binding protein family member (far-3) [Source:RefSeq_peptide;Acc:NP_506251]Fatty Acid/Retinol binding protein family member (far-3) [Source:RefSeq_peptide;Acc:NP_506251] BY ORTHOLOGY TO:F15B9.1
17.1521 -18.73 0.00759877 1300 1 1 2 [+] picture button
CBG05104 ENSCBRT00000010307 ptr-11 encodes a nematode-specific member of the sterol sensing domain (SSD) proteins, distantly paralogous to Drosophila PATCHED (PTC) and human PTCH (OMIM:601309, mutated in basal cell nevus syndrome). PTR-11 is required for normal growth to full size, locomotion, and vulval morphogenesis. [Source: WormBase]ptr-11 encodes a nematode-specific member of the sterol sensing domain (SSD) proteins, distantly paralogous to Drosophila PATCHED (PTC) and human PTCH (OMIM:601309, mutated in basal cell nevus syndrome). PTR-11 is required for normal growth to full size, locomotion, and vulval morphogenesis. [Source: WormBase] BY ORTHOLOGY TO:F56C11.2
14.9782 -12.47 0.00808408 1300 5 1 7 [+] picture button
CBG17953 ENSCBRT00000003000 C35D10.12 [Source:RefSeq_peptide;Acc:NP_498018]C35D10.12 [Source:RefSeq_peptide;Acc:NP_498018] BY ORTHOLOGY TO:C35D10.12
15.0171 -8.29 0.00857812 1300 3 1 3 [+] picture button
CBG19955 ENSCBRT00000002459 The elo-5 gene encodes a paralog of elo-1 and elo-2, each of which encodes a polyunsaturated fatty acid (PUFA) elongase. ELO-5 is required for normally rapid growth and for normal fatty acid composition. [Source: WormBase]The elo-5 gene encodes a paralog of elo-1 and elo-2, each of which encodes a polyunsaturated fatty acid (PUFA) elongase. ELO-5 is required for normally rapid growth and for normal fatty acid composition. [Source: WormBase] BY ORTHOLOGY TO:F41H10.7
15.0751 -16.48 0.00857812 1300 4 1 12 [+] picture button
CBG10143 ENSCBRT00000007434 M01A8.1 [Source:RefSeq_peptide;Acc:NP_499045]M01A8.1 [Source:RefSeq_peptide;Acc:NP_499045] BY ORTHOLOGY TO:M01A8.1
16.9571 -17.85 0.00952413 1300 4 2 7 [+] picture button
CBG07554 ENSCBRT00000011164 C44H4.1 [Source:RefSeq_peptide;Acc:NP_510424]C44H4.1 [Source:RefSeq_peptide;Acc:NP_510424] BY ORTHOLOGY TO:C44H4.1
14.9596 -20.35 0.0101544 1300 3 2 4 [+] picture button
CBG06709 ENSCBRT00000009720 Serpentine Receptor, class D (delta) family member (srd-17) [Source:RefSeq_peptide;Acc:NP_506332]Serpentine Receptor, class D (delta) family member (srd-17) [Source:RefSeq_peptide;Acc:NP_506332] BY ORTHOLOGY TO:Y2H9A.2
16.8801 -18.71 0.0104126 1300 3 1 3 [+] picture button
CBG23421 ENSCBRT00000011539 T04H1.5 [Source:RefSeq_peptide;Acc:NP_506071]T04H1.5 [Source:RefSeq_peptide;Acc:NP_506071] BY ORTHOLOGY TO:T04H1.5
15.008 -19.04 0.0105682 1300 1 2 1 [+] picture button
CBG12966 ENSCBRT00000012907 B0228.8 [Source:RefSeq_peptide;Acc:NP_495630]B0228.8 [Source:RefSeq_peptide;Acc:NP_495630] BY ORTHOLOGY TO:B0228.8
16.6862 -21.85 0.0130259 1300 3 1 3 [+] picture button
CBG13833 ENSCBRT00000012459 Y73F8A.20 [Source:RefSeq_peptide;Acc:NP_502855]Y73F8A.20 [Source:RefSeq_peptide;Acc:NP_502855] BY ORTHOLOGY TO:Y73F8A.20
16.5899 -20.36 0.0145552 1300 2 1 2 [+] picture button
CBG03050 ENSCBRT00000007014 conserved hypothetical proteinconserved hypothetical protein BY ORTHOLOGY TO:AAEL006420-RA
16.5673 -20.23 0.014938 1300 2 1 2 [+] picture button
CBG08168 ENSCBRT00000003765 ZK1193.2 [Source:RefSeq_peptide;Acc:NP_508098]ZK1193.2 [Source:RefSeq_peptide;Acc:NP_508098] BY ORTHOLOGY TO:ZK1193.2
16.4961 -15.99 0.0162144 1300 4 1 3 [+] picture button
CBG17972 ENSCBRT00000003010 C15H11.1 [Source:RefSeq_peptide;Acc:NP_506565]C15H11.1 [Source:RefSeq_peptide;Acc:NP_506565] BY ORTHOLOGY TO:C15H11.1
16.4699 -14.9 0.0167097 1300 5 1 6 [+] picture button
ENSCBRT00000001441 Y54G11A.1 [Source:RefSeq_peptide;Acc:NP_496972]Y54G11A.1 [Source:RefSeq_peptide;Acc:NP_496972] BY ORTHOLOGY TO:Y54G11A.1
16.4218 -17.6 0.0176582 1300 5 1 7 [+] picture button
CBG12428 ENSCBRT00000013166 C31H5.5 [Source:RefSeq_peptide;Acc:NP_492432]C31H5.5 [Source:RefSeq_peptide;Acc:NP_492432] BY ORTHOLOGY TO:C31H5.5
16.4009 -14 0.018086 1300 3 2 5 [+] picture button
CBG23009 ENSCBRT00000008843 CG1504-PA [Source:RefSeq_peptide;Acc:NP_608382]CG1504-PA [Source:RefSeq_peptide;Acc:NP_608382] BY ORTHOLOGY TO:CG1504-RA
16.3889 -10.37 0.0183374 1300 7 1 9 [+] picture button
CBG07927 ENSCBRT00000004689 W05B5.2 [Source:RefSeq_peptide;Acc:NP_493283]W05B5.2 [Source:RefSeq_peptide;Acc:NP_493283] BY ORTHOLOGY TO:W05B5.2
16.3847 -16.31 0.0184252 1300 1 1 1 [+] picture button
CBG16609 ENSCBRT00000014544 K04G7.1 [Source:RefSeq_peptide;Acc:NP_498567]K04G7.1 [Source:RefSeq_peptide;Acc:NP_498567] BY ORTHOLOGY TO:K04G7.1
16.3724 -11.17 0.0186888 1300 8 1 14 [+] picture button
CBG04322 ENSCBRT00000007690 C56C10.4 [Source:RefSeq_peptide;Acc:NP_495334]C56C10.4 [Source:RefSeq_peptide;Acc:NP_495334] BY ORTHOLOGY TO:C56C10.4
16.3021 -17.41 0.0202561 1300 4 1 3 [+] picture button

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