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Target Listing


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Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-60

201 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG00462 ENSCBRT00000001909 Transcription elongation factor SPT4 (DRB sensitivity-inducing factor small subunit) (DSIF small subunit). [Source:Uniprot/SWISSPROT;Acc:Q3SYX6]Transcription elongation factor SPT4 (DRB sensitivity-inducing factor small subunit) (DSIF small subunit). [Source:Uniprot/SWISSPROT;Acc:Q3SYX6] BY ORTHOLOGY TO:ENSBTAT00000004389
17.9352 -20.36 1e-06 1300 6 1 3 [+] picture button
CBG00476 ENSCBRT00000001915 N-acylethanolamine-hydrolyzing acid amidase precursor (EC 3.5.1.-) (N- acylsphingosine amidohydrolase-like) (ASAH-like protein). [Source:Uniprot/SWISSPROT;Acc:Q5KTC7]N-acylethanolamine-hydrolyzing acid amidase precursor (EC 3.5.1.-) (N- acylsphingosine amidohydrolase-like) (ASAH-like protein). [Source:Uniprot/SWISSPROT;Acc:Q5KTC7] BY ORTHOLOGY TO:ENSRNOT00000003102
15.4588 -12.57 4.10064e-05 1300 9 1 3 [+] picture button
CBG02627 ENSCBRT00000007517 sma-6 encodes a serine/threonine protein kinase that is orthologous to type I TGF-beta receptors. sma-6 activity is required for regulating body length and for proper development of the male tail. sma-6 expression first begins at the 1.5-fold stage of embryogenesis and continues through adulthood. sma-6 is expressed in dorsal and ventral hypodermis, pharyngeal muscle, and the intestine. expression in the hypodermis is necessary and sufficient for body length regulation. [Source: WormBase]sma-6 encodes a serine/threonine protein kinase that is orthologous to type I TGF-beta receptors. sma-6 activity is required for regulating body length and for proper development of the male tail. sma-6 expression first begins at the 1.5-fold stage of embryogenesis and continues through adulthood. sma-6 is expressed in dorsal and ventral hypodermis, pharyngeal muscle, and the intestine. expression in the hypodermis is necessary and sufficient for body length regulation. [Source: WormBase] BY ORTHOLOGY TO:C32D5.2
21.3604 -36.96 0.000107177 1300 4 1 4 [+] picture button
CBG02348 ENSCBRT00000006672 C34F11.5 [Source:RefSeq_peptide;Acc:NP_494971]C34F11.5 [Source:RefSeq_peptide;Acc:NP_494971] BY ORTHOLOGY TO:C34F11.5
17.4562 -14.09 0.000136874 1300 5 1 3 [+] picture button
CBG02104 ENSCBRT00000004178 N(4)-(Beta-N-acetylglucosaminyl)-L-asparaginase precursor (EC 3.5.1.26) (Glycosylasparaginase) (Aspartylglucosaminidase) (N4-(N- acetyl-beta-glucosaminyl)-L-asparagine amidase) (AGA) [Contains: Glycosylasparaginase alpha chain; Glycosylasparaginase beta c [Source:Uniprot/SWISSPROT;Acc:P30919]N(4)-(Beta-N-acetylglucosaminyl)-L-asparaginase precursor (EC 3.5.1.26) (Glycosylasparaginase) (Aspartylglucosaminidase) (N4-(N- acetyl-beta-glucosaminyl)-L-asparagine amidase) (AGA) [Contains: Glycosylasparaginase alpha chain; Glycosylasparaginase beta c [Source:Uniprot/SWISSPROT;Acc:P30919] BY ORTHOLOGY TO:ENSRNOT00000000120
16.7012 -16.03 0.000401013 1300 6 2 10 [+] picture button
CBG11768 ENSCBRT00000004091 Y49E10.4 [Source:RefSeq_peptide;Acc:NP_499613]Y49E10.4 [Source:RefSeq_peptide;Acc:NP_499613] BY ORTHOLOGY TO:Y49E10.4
15.9747 -12.57 0.000550604 1300 6 1 4 [+] picture button
CBG13938 ENSCBRT00000013635 Y104H12D.3 [Source:RefSeq_peptide;Acc:NP_500051]Y104H12D.3 [Source:RefSeq_peptide;Acc:NP_500051] BY ORTHOLOGY TO:Y104H12D.3
16.3018 -12.59 0.000627939 1300 4 1 3 [+] picture button
CBG01661 ENSCBRT00000005542 Y38C1AA.3 [Source:RefSeq_peptide;Acc:NP_499876]Y38C1AA.3 [Source:RefSeq_peptide;Acc:NP_499876] BY ORTHOLOGY TO:Y38C1AA.3
16.2478 -14.01 0.000674083 1300 3 2 3 [+] picture button
CBG11736 ENSCBRT00000004109 Y22D7AR.5 [Source:RefSeq_peptide;Acc:NP_497442]Y22D7AR.5 [Source:RefSeq_peptide;Acc:NP_497442] BY ORTHOLOGY TO:Y22D7AR.5
16.6028 -19.38 0.000749446 1300 5 1 3 [+] picture button
CBG07574 ENSCBRT00000011139 F40E10.5 [Source:RefSeq_peptide;Acc:NP_510441]F40E10.5 [Source:RefSeq_peptide;Acc:NP_510441] BY ORTHOLOGY TO:F40E10.5
15.9391 -14.75 0.000888889 1300 6 1 5 [+] picture button
CBG20422 ENSCBRT00000003553 Y53H1B.2 [Source:RefSeq_peptide;Acc:NP_492899]Y53H1B.2 [Source:RefSeq_peptide;Acc:NP_492899] BY ORTHOLOGY TO:Y53H1B.2
15.9211 -12.57 0.000922185 1300 6 1 4 [+] picture button
CBG06221 ENSCBRT00000008253 transmembrane emp24 protein transport domain containing 5 [Source:RefSeq_peptide;Acc:NP_001007957]transmembrane emp24 protein transport domain containing 5 [Source:RefSeq_peptide;Acc:NP_001007957] BY ORTHOLOGY TO:ENSGALT00000009497
16.0107 -15.19 0.00113882 1300 3 1 4 [+] picture button
CBG10143 ENSCBRT00000007434 M01A8.1 [Source:RefSeq_peptide;Acc:NP_499045]M01A8.1 [Source:RefSeq_peptide;Acc:NP_499045] BY ORTHOLOGY TO:M01A8.1
16.0107 -18.72 0.00122689 1300 4 2 7 [+] picture button
CBG22157 ENSCBRT00000004281 Putative complexin-1. [Source:Uniprot/SWISSPROT;Acc:Q9GUM7]Putative complexin-1. [Source:Uniprot/SWISSPROT;Acc:Q9GUM7] BY ORTHOLOGY TO:Y73E7A.4
16.4823 -16.52 0.00140993 1300 7 1 7 [+] picture button
CBG17774 ENSCBRT00000000205 F18A12.8 encodes two isoforms of a neprilysin. neprilysins are thermolysin-like zinc metallopeptidases, found on the outer surface of animal cells, that negatively regulate small signalling peptides (e.g., enkephalin, tachykinin, insulin, and natriuretic peptides) by cleaving them. F18A12.8A is closely paralogous to ZK20.6, and orthologous to CG9761 in Drosophila melanogaster. F18A12.8 is homologous, and possibly orthologous, to human ECE1 (OMIM:600423. mutation leads to Hirschsprung disease, cardiac defects, and autonomic dysfunction). more generally, F18A12.8A falls into a group of proteins that includes the classical neprilysins found in mammals (e.g., PEX [OMIM:307800] and the enkephalin cleaving enzymes). [Source: WormBase]F18A12.8 encodes two isoforms of a neprilysin. neprilysins are thermolysin-like zinc metallopeptidases, found on the outer surface of animal cells, that negatively regulate small signalling peptides (e.g., enkephalin, tachykinin, insulin, and natriuretic peptides) by cleaving them. F18A12.8A is closely paralogous to ZK20.6, and orthologous to CG9761 in Drosophila melanogaster. F18A12.8 is homologous, and possibly orthologous, to human ECE1 (OMIM:600423. mutation leads to Hirschsprung disease, cardiac defects, and autonomic dysfunction). more generally, F18A12.8A falls into a group of proteins that includes the classical neprilysins found in mammals (e.g., PEX [OMIM:307800] and the enkephalin cleaving enzymes). [Source: WormBase] BY ORTHOLOGY TO:F18A12.8a
16.4822 -14.7 0.00144529 1300 4 2 8 [+] picture button
CBG05377 ENSCBRT00000003009 F26A1.10 [Source:RefSeq_peptide;Acc:NP_498000]F26A1.10 [Source:RefSeq_peptide;Acc:NP_498000] BY ORTHOLOGY TO:F26A1.10
15.4802 -13.11 0.00152619 1300 3 1 2 [+] picture button
CBG01391 ENSCBRT00000002343 CYtochrome P450 family member (cyp-35B2) [Source:RefSeq_peptide;Acc:NP_504094]CYtochrome P450 family member (cyp-35B2) [Source:RefSeq_peptide;Acc:NP_504094] BY ORTHOLOGY TO:K07C6.3
15.6226 -17.83 0.00169578 1300 3 1 2 [+] picture button
CBG02733 ENSCBRT00000007363 C07E3.3 [Source:RefSeq_peptide;Acc:NP_496230]C07E3.3 [Source:RefSeq_peptide;Acc:NP_496230] BY ORTHOLOGY TO:C07E3.3
15.729 -8.89 0.00180582 1300 5 1 5 [+] picture button
CBG20434 ENSCBRT00000003709 T06C10.3 [Source:RefSeq_peptide;Acc:NP_501307]T06C10.3 [Source:RefSeq_peptide;Acc:NP_501307] BY ORTHOLOGY TO:T06C10.3
15.7068 -9.04 0.00207609 1300 4 1 4 [+] picture button
CBG08376 ENSCBRT00000013051 Riboflavin kinase (EC 2.7.1.26) (ATP:riboflavin 5'-phosphotransferase) (Flavokinase). [Source:Uniprot/SWISSPROT;Acc:Q969G6]Riboflavin kinase (EC 2.7.1.26) (ATP:riboflavin 5'-phosphotransferase) (Flavokinase). [Source:Uniprot/SWISSPROT;Acc:Q969G6] BY ORTHOLOGY TO:ENSORLT00000007232
15.6369 -14.79 0.00235053 1300 2 2 2 [+] picture button
CBG18348 ENSCBRT00000001608 Y39A1A.7 [Source:RefSeq_peptide;Acc:NP_499341]Y39A1A.7 [Source:RefSeq_peptide;Acc:NP_499341] BY ORTHOLOGY TO:Y39A1A.7
15.6982 -6.47 0.00238787 1300 4 1 4 [+] picture button
CBG06971 ENSCBRT00000012296 T01D1.3 [Source:RefSeq_peptide;Acc:NP_493675]T01D1.3 [Source:RefSeq_peptide;Acc:NP_493675] BY ORTHOLOGY TO:T01D1.3
15.9137 -19.46 0.00251124 1300 4 1 3 [+] picture button
CBG00443 ENSCBRT00000001941 F11E6.7 [Source:RefSeq_peptide;Acc:NP_503112]F11E6.7 [Source:RefSeq_peptide;Acc:NP_503112] BY ORTHOLOGY TO:F11E6.7
15.5632 -17.11 0.0025327 1300 3 1 4 [+] picture button
CBG21204 ENSCBRT00000000881 F52C9.5 [Source:RefSeq_peptide;Acc:NP_498133]F52C9.5 [Source:RefSeq_peptide;Acc:NP_498133] BY ORTHOLOGY TO:F52C9.5
16.0227 -16.93 0.00255126 1300 3 1 2 [+] picture button
CBG09906 ENSCBRT00000008092 M04D8.7 [Source:RefSeq_peptide;Acc:NP_499228]M04D8.7 [Source:RefSeq_peptide;Acc:NP_499228] BY ORTHOLOGY TO:M04D8.7
15.6331 -14.56 0.002712 1300 3 1 3 [+] picture button
CBG01703 ENSCBRT00000005580 ZK180.6 [Source:RefSeq_peptide;Acc:NP_500584]ZK180.6 [Source:RefSeq_peptide;Acc:NP_500584] BY ORTHOLOGY TO:ZK180.6
15.2671 -15.01 0.00286208 1300 6 1 5 [+] picture button
CBG10091 ENSCBRT00000007245 F54C8.6 [Source:RefSeq_peptide;Acc:NP_499077]F54C8.6 [Source:RefSeq_peptide;Acc:NP_499077] BY ORTHOLOGY TO:F54C8.6
16.4487 -12.17 0.00306248 1300 2 2 2 [+] picture button
CBG15383 ENSCBRT00000010117 RCC1 domain containing 1 [Source:RefSeq_peptide;Acc:NP_291022]RCC1 domain containing 1 [Source:RefSeq_peptide;Acc:NP_291022] BY ORTHOLOGY TO:ENSGALT00000038135
15.897 -12.57 0.00317848 1300 4 1 3 [+] picture button
CBG01020 ENSCBRT00000002127 ZK938.2 [Source:RefSeq_peptide;Acc:NP_496120]ZK938.2 [Source:RefSeq_peptide;Acc:NP_496120] BY ORTHOLOGY TO:ZK938.2
15.2902 -12.01 0.00331644 1300 3 1 3 [+] picture button
CBG21734 ENSCBRT00000004562 conserved hypothetical proteinconserved hypothetical protein BY ORTHOLOGY TO:AAEL004211-RA
15.5069 -10.9 0.00333949 1300 4 1 4 [+] picture button
CBG23464 ENSCBRT00000011575 F23H12.5 [Source:RefSeq_peptide;Acc:NP_506096]F23H12.5 [Source:RefSeq_peptide;Acc:NP_506096] BY ORTHOLOGY TO:F23H12.5
15.1499 -11.16 0.00361022 1300 3 2 2 [+] picture button
CBG05262 ENSCBRT00000003874 K08H2.9 [Source:RefSeq_peptide;Acc:NP_001024774]K08H2.9 [Source:RefSeq_peptide;Acc:NP_001024774] BY ORTHOLOGY TO:K08H2.9
15.6331 -11.86 0.00362649 1300 2 1 1 [+] picture button
CBG11422 ENSCBRT00000013977 R10D12.8 [Source:RefSeq_peptide;Acc:NP_506463]R10D12.8 [Source:RefSeq_peptide;Acc:NP_506463] BY ORTHOLOGY TO:R10D12.8
15.0494 -10.69 0.00363465 1300 4 1 3 [+] picture button
CBG06417 ENSCBRT00000010930 R09B5.11 [Source:RefSeq_peptide;Acc:NP_503413]R09B5.11 [Source:RefSeq_peptide;Acc:NP_503413] BY ORTHOLOGY TO:R09B5.11
15.2344 -8.88 0.00370021 1300 6 1 5 [+] picture button
CBG18374 ENSCBRT00000001570 Ras-related protein Rab-33. [Source:Uniprot/SWISSPROT;Acc:Q20365]Ras-related protein Rab-33. [Source:Uniprot/SWISSPROT;Acc:Q20365] BY ORTHOLOGY TO:F43D9.2
15.2095 -11.67 0.0038945 1300 7 1 6 [+] picture button
CBG01946 ENSCBRT00000005797 F19C6.2a [Source:RefSeq_peptide;Acc:NP_509677]F19C6.2a [Source:RefSeq_peptide;Acc:NP_509677] BY ORTHOLOGY TO:F19C6.2a
15.2023 -9.32 0.00394937 1300 3 1 2 [+] picture button
CBG02447 ENSCBRT00000006535 C17G10.3 [Source:RefSeq_peptide;Acc:NP_495082]C17G10.3 [Source:RefSeq_peptide;Acc:NP_495082] BY ORTHOLOGY TO:C17G10.3
15.3616 -10 0.0039713 1300 6 1 6 [+] picture button
CBG21917 ENSCBRT00000008208 Adenylosuccinate lyase. [Source:Uniprot/SPTREMBL;Acc:Q6GLC2]Adenylosuccinate lyase. [Source:Uniprot/SPTREMBL;Acc:Q6GLC2] BY ORTHOLOGY TO:ENSXETT00000013869
15.8574 -13.72 0.00402289 1300 3 1 3 [+] picture button
CBG01760 ENSCBRT00000005626 Neuropeptide-Like Protein family member (nlp-17) [Source:RefSeq_peptide;Acc:NP_502603]Neuropeptide-Like Protein family member (nlp-17) [Source:RefSeq_peptide;Acc:NP_502603] BY ORTHOLOGY TO:Y45F10A.5
15.9658 -14.64 0.0040697 1300 4 1 3 [+] picture button
CBG22074 ENSCBRT00000004327 C53D5.1a [Source:RefSeq_peptide;Acc:NP_490712]C53D5.1a [Source:RefSeq_peptide;Acc:NP_490712] BY ORTHOLOGY TO:C53D5.1b
17.3188 -19.12 0.00409266 1300 9 1 12 [+] picture button
CBG15133 ENSCBRT00000010292 Y39A3CR.6 [Source:RefSeq_peptide;Acc:NP_497465]Y39A3CR.6 [Source:RefSeq_peptide;Acc:NP_497465] BY ORTHOLOGY TO:Y39A3CR.6
15.0699 -8.5 0.00424568 1300 3 1 3 [+] picture button
CBG07203 ENSCBRT00000012255 T13B5.3 [Source:RefSeq_peptide;Acc:NP_493911]T13B5.3 [Source:RefSeq_peptide;Acc:NP_493911] BY ORTHOLOGY TO:T13B5.3
15.8546 -8.06 0.00513607 1300 4 2 5 [+] picture button
CBG07797 ENSCBRT00000004841 Serpentine Receptor, class X family member (srx-111) [Source:RefSeq_peptide;Acc:NP_494642]Serpentine Receptor, class X family member (srx-111) [Source:RefSeq_peptide;Acc:NP_494642] BY ORTHOLOGY TO:T24E12.4
15.7253 -5.7 0.00526171 1300 5 1 9 [+] picture button
CBG11841 ENSCBRT00000009336 conserved hypothetical proteinconserved hypothetical protein BY ORTHOLOGY TO:AAEL011819-RA
17.6854 -12.1 0.00544185 1300 2 2 2 [+] picture button
CBG23963 ENSCBRT00000008975 ZC155.4 [Source:RefSeq_peptide;Acc:NP_498106]ZC155.4 [Source:RefSeq_peptide;Acc:NP_498106] BY ORTHOLOGY TO:ZC155.4
16.1883 -13.92 0.00608847 1300 4 1 3 [+] picture button
CBG13943 ENSCBRT00000013629 Y77E11A.6 [Source:RefSeq_peptide;Acc:NP_500076]Y77E11A.6 [Source:RefSeq_peptide;Acc:NP_500076] BY ORTHOLOGY TO:Y77E11A.6
17.5632 -19.89 0.00619689 1300 1 1 2 [+] picture button
CBG00911 ENSCBRT00000003940 The let-23 gene encodes a member of the EGF-receptor family of transmembrane tyrosine kinases that affects viability, inductive signaling during development of the vulva, male spicule formation, posterior development of the epidermis, and ovulation. it is genetically upstream of the let-60/RAS pathway with respect to viability and vulval development, is upstream of the IP3 pathway with respect to fertility, and is expressed in vulval precursor cells. [Source: WormBase]The let-23 gene encodes a member of the EGF-receptor family of transmembrane tyrosine kinases that affects viability, inductive signaling during development of the vulva, male spicule formation, posterior development of the epidermis, and ovulation. it is genetically upstream of the let-60/RAS pathway with respect to viability and vulval development, is upstream of the IP3 pathway with respect to fertility, and is expressed in vulval precursor cells. [Source: WormBase] BY ORTHOLOGY TO:ZK1067.1
15.0951 -11.52 0.00645683 1300 2 2 2 [+] picture button
CBG10932 ENSCBRT00000001254 nhx-4 encodes two isoforms of a sodium/proton exchanger expressed in the plasma membrane of nearly all cells and cell types. in polarized epithelial cells, NHX-4::GFP appears specifically located in the basolateral membrane, like human SLC9A1 ('NHE1'. OMIM:107310). nhx-4 has no reported mutant or RNAi phenotype, but, given its ubiquitous expression, may represent a housekeeping exchanger generally required for cellular viability. transgenic NHX-4A, when expressed in cell culture, mediates Na[+]-dependent pH recovery after intracellular acidification, independently of extracellular Cl[-]. [Source: WormBase]nhx-4 encodes two isoforms of a sodium/proton exchanger expressed in the plasma membrane of nearly all cells and cell types. in polarized epithelial cells, NHX-4::GFP appears specifically located in the basolateral membrane, like human SLC9A1 ('NHE1'. OMIM:107310). nhx-4 has no reported mutant or RNAi phenotype, but, given its ubiquitous expression, may represent a housekeeping exchanger generally required for cellular viability. transgenic NHX-4A, when expressed in cell culture, mediates Na[+]-dependent pH recovery after intracellular acidification, independently of extracellular Cl[-]. [Source: WormBase] BY ORTHOLOGY TO:F14B8.1a
15.1465 -7.29 0.00671468 1300 1 1 1 [+] picture button
CBG18126 ENSCBRT00000003298 F42H10.5 [Source:RefSeq_peptide;Acc:NP_498871]F42H10.5 [Source:RefSeq_peptide;Acc:NP_498871] BY ORTHOLOGY TO:F42H10.5
15.1655 -11.64 0.007212 1300 4 1 4 [+] picture button
CBG22587 ENSCBRT00000009857 nhr-34 encodes a member of the nuclear receptor superfamily. phylogenetic analyses indicate that NHR-34 is a divergent nuclear receptor that likely arose from the expansion and diversification of the HNF4 (NR2A) subgroup in C. elegans. the role of NHR-34 in C. elegans development and/or behavior, and the NHR-34 expression pattern, are not yet known. [Source: WormBase]nhr-34 encodes a member of the nuclear receptor superfamily. phylogenetic analyses indicate that NHR-34 is a divergent nuclear receptor that likely arose from the expansion and diversification of the HNF4 (NR2A) subgroup in C. elegans. the role of NHR-34 in C. elegans development and/or behavior, and the NHR-34 expression pattern, are not yet known. [Source: WormBase] BY ORTHOLOGY TO:F58G6.5c
15.8377 -11.39 0.0072298 1300 5 2 7 [+] picture button

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