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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-58

151 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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ENSCBRT00000010634 H40L08.3 [Source:RefSeq_peptide;Acc:NP_510505]H40L08.3 [Source:RefSeq_peptide;Acc:NP_510505] BY ORTHOLOGY TO:H40L08.3
16.2848 -21.25 0.000906619 1300 6 2 4 [+] picture button
CBG10044 ENSCBRT00000007283 C48B4.3 [Source:RefSeq_peptide;Acc:NP_499118]C48B4.3 [Source:RefSeq_peptide;Acc:NP_499118] BY ORTHOLOGY TO:C48B4.3
16.4594 -15.83 0.00169735 1300 7 2 9 [+] picture button
CBG00310 ENSCBRT00000000306 F26A3.7 [Source:RefSeq_peptide;Acc:NP_492136]F26A3.7 [Source:RefSeq_peptide;Acc:NP_492136] BY ORTHOLOGY TO:F26A3.7
16.8281 -15.23 0.00197966 1300 7 1 8 [+] picture button
CBG11929 ENSCBRT00000011772 SUppressor of Elongation defect family member (sue-1) [Source:RefSeq_peptide;Acc:NP_492083]SUppressor of Elongation defect family member (sue-1) [Source:RefSeq_peptide;Acc:NP_492083] BY ORTHOLOGY TO:F07A5.5
15.6514 -18.67 0.00199106 1300 2 1 2 [+] picture button
CBG02547 ENSCBRT00000007572 calsyntenin-1 precursorcalsyntenin-1 precursor BY ORTHOLOGY TO:AAEL003499-RA
15.6699 -16.68 0.00216542 1300 2 1 2 [+] picture button
CBG09925 ENSCBRT00000008094 C33F10.11 [Source:RefSeq_peptide;Acc:NP_494868]C33F10.11 [Source:RefSeq_peptide;Acc:NP_494868] BY ORTHOLOGY TO:C33F10.11
15.6538 -16.26 0.00230178 1300 4 2 4 [+] picture button
CBG06227 ENSCBRT00000008243 suppression of tumorigenicitysuppression of tumorigenicity BY ORTHOLOGY TO:AAEL001395-RA
15.7877 -17.14 0.00251523 1300 1 2 1 [+] picture button
CBG13352 ENSCBRT00000009480 histone deacetylasehistone deacetylase BY ORTHOLOGY TO:AAEL004416-RA
15.5307 -17.48 0.00260386 1300 5 1 5 [+] picture button
CBG18315 ENSCBRT00000001631 The hpl-2 gene encodes a homolog of heterochromatin protein 1 (HP1) which is required for germline function, silencing of transgenes in the germline, and vulval development. [Source: WormBase]The hpl-2 gene encodes a homolog of heterochromatin protein 1 (HP1) which is required for germline function, silencing of transgenes in the germline, and vulval development. [Source: WormBase] BY ORTHOLOGY TO:K01G5.2c
15.9511 -19.32 0.00295133 1300 7 1 9 [+] picture button
CBG15004 ENSCBRT00000004402 C28D4.5 [Source:RefSeq_peptide;Acc:NP_501736]C28D4.5 [Source:RefSeq_peptide;Acc:NP_501736] BY ORTHOLOGY TO:C28D4.5
15.7545 -19.7 0.00298027 1300 6 1 6 [+] picture button
CBG02622 ENSCBRT00000007521 C29F5.7 [Source:RefSeq_peptide;Acc:NP_495268]C29F5.7 [Source:RefSeq_peptide;Acc:NP_495268] BY ORTHOLOGY TO:C29F5.7
15.4953 -21.29 0.00302649 1300 4 1 4 [+] picture button
CBG11531 ENSCBRT00000013804 Tubulin folding cofactor B (Tubulin-specific chaperone B) (Cytoskeleton-associated protein 1) (Cytoskeleton-associated protein CKAPI). [Source:Uniprot/SWISSPROT;Acc:Q99426]Tubulin folding cofactor B (Tubulin-specific chaperone B) (Cytoskeleton-associated protein 1) (Cytoskeleton-associated protein CKAPI). [Source:Uniprot/SWISSPROT;Acc:Q99426] BY ORTHOLOGY TO:ENSXETT00000041323
15.6022 -17.52 0.00308725 1300 4 2 4 [+] picture button
CBG01486 ENSCBRT00000001879 C10B5.3 [Source:RefSeq_peptide;Acc:NP_505214]C10B5.3 [Source:RefSeq_peptide;Acc:NP_505214] BY ORTHOLOGY TO:C10B5.3
15.5058 -15.96 0.00313016 1300 3 2 3 [+] picture button
CBG16524 ENSCBRT00000014603 hypothetical protein LOC511672 [Source:RefSeq_peptide;Acc:NP_001033173]hypothetical protein LOC511672 [Source:RefSeq_peptide;Acc:NP_001033173] BY ORTHOLOGY TO:ENSBTAT00000024370
16.0117 -27.77 0.00318694 1300 4 1 4 [+] picture button
CBG00359 ENSCBRT00000002001 FMRF-Like Peptide family member (flp-17) [Source:RefSeq_peptide;Acc:NP_503051]FMRF-Like Peptide family member (flp-17) [Source:RefSeq_peptide;Acc:NP_503051] BY ORTHOLOGY TO:C52D10.11
15.1249 -17 0.00324346 1300 3 1 4 [+] picture button
CBG07554 ENSCBRT00000011164 C44H4.1 [Source:RefSeq_peptide;Acc:NP_510424]C44H4.1 [Source:RefSeq_peptide;Acc:NP_510424] BY ORTHOLOGY TO:C44H4.1
15.5463 -17.59 0.00331547 1300 3 2 4 [+] picture button
CBG18086 ENSCBRT00000003202 PREDICTED: Gallus gallus similar to heparin/heparan sulfate:glucuronic acid C5 epimerase (LOC415566), mRNA. [Source:RefSeq_dna;Acc:XR_026919]PREDICTED: Gallus gallus similar to heparin/heparan sulfate:glucuronic acid C5 epimerase (LOC415566), mRNA. [Source:RefSeq_dna;Acc:XR_026919] BY ORTHOLOGY TO:ENSGALT00000013097
15.4083 -19.01 0.00354004 1300 3 1 3 [+] picture button
CBG02496 ENSCBRT00000006491 DM (Doublesex/MAB-3) Domain family member (dmd-5) [Source:RefSeq_peptide;Acc:NP_495138]DM (Doublesex/MAB-3) Domain family member (dmd-5) [Source:RefSeq_peptide;Acc:NP_495138] BY ORTHOLOGY TO:F10C1.5
15.7309 -24.29 0.00384104 1300 3 1 2 [+] picture button
CBG17384 ENSCBRT00000001162 IFA-1 encodes an essential intermediate filament protein that is coexpressed with the essential IF protein IFB-1. IFA-1 is required for survival past the L1 larva stage, and a normal intestine. IFA-1 forms heteropolymeric intermediate filaments in vitro with an equimolar mixture of IFB-1. IFA-1 is predicted to function as a structural component of the cytoskeleton, and is required for larval development and normal intestinal morphology. ifa-1 is expressed in amphid sensory neurons, in tail neurons and other unidentified neurons, some pharyngeal muscles, the pharyngeal-intestinal valve, the vulva, and the rectum. [Source: WormBase]IFA-1 encodes an essential intermediate filament protein that is coexpressed with the essential IF protein IFB-1. IFA-1 is required for survival past the L1 larva stage, and a normal intestine. IFA-1 forms heteropolymeric intermediate filaments in vitro with an equimolar mixture of IFB-1. IFA-1 is predicted to function as a structural component of the cytoskeleton, and is required for larval development and normal intestinal morphology. ifa-1 is expressed in amphid sensory neurons, in tail neurons and other unidentified neurons, some pharyngeal muscles, the pharyngeal-intestinal valve, the vulva, and the rectum. [Source: WormBase] BY ORTHOLOGY TO:F38B2.1a
15.2236 -16.89 0.00399705 1300 2 1 1 [+] picture button
CBG14172 ENSCBRT00000002593 sul-1 encodes a member of the sulfatase family. [Source: WormBase]sul-1 encodes a member of the sulfatase family. [Source: WormBase] BY ORTHOLOGY TO:K09C4.8
15.3858 -17.3 0.00409812 1300 4 1 5 [+] picture button
CBG02627 ENSCBRT00000007517 sma-6 encodes a serine/threonine protein kinase that is orthologous to type I TGF-beta receptors. sma-6 activity is required for regulating body length and for proper development of the male tail. sma-6 expression first begins at the 1.5-fold stage of embryogenesis and continues through adulthood. sma-6 is expressed in dorsal and ventral hypodermis, pharyngeal muscle, and the intestine. expression in the hypodermis is necessary and sufficient for body length regulation. [Source: WormBase]sma-6 encodes a serine/threonine protein kinase that is orthologous to type I TGF-beta receptors. sma-6 activity is required for regulating body length and for proper development of the male tail. sma-6 expression first begins at the 1.5-fold stage of embryogenesis and continues through adulthood. sma-6 is expressed in dorsal and ventral hypodermis, pharyngeal muscle, and the intestine. expression in the hypodermis is necessary and sufficient for body length regulation. [Source: WormBase] BY ORTHOLOGY TO:C32D5.2
15.3096 -20.57 0.00423306 1300 4 1 4 [+] picture button
CBG02598 ENSCBRT00000007542 C30B5.7 [Source:RefSeq_peptide;Acc:NP_495243]C30B5.7 [Source:RefSeq_peptide;Acc:NP_495243] BY ORTHOLOGY TO:C30B5.7
15.4389 -14.17 0.00432208 1300 4 2 4 [+] picture button
CBG00201 ENSCBRT00000001507 Sodium:Neurotransmitter symporter Family family member (snf-12) [Source:RefSeq_peptide;Acc:NP_509527]Sodium:Neurotransmitter symporter Family family member (snf-12) [Source:RefSeq_peptide;Acc:NP_509527] BY ORTHOLOGY TO:T25B6.7
15.5621 -20.09 0.00448582 1300 5 1 4 [+] picture button
CBG03399 ENSCBRT00000007164 Tyrosine-protein phosphatase 2 (EC 3.1.3.48) (Protein-tyrosine phosphatase 2). [Source:Uniprot/SWISSPROT;Acc:P28192]Tyrosine-protein phosphatase 2 (EC 3.1.3.48) (Protein-tyrosine phosphatase 2). [Source:Uniprot/SWISSPROT;Acc:P28192] BY ORTHOLOGY TO:K04D7.4
15.6902 -18.69 0.00477743 1300 3 2 4 [+] picture button
CBG16352 ENSCBRT00000011241 K08B5.1 [Source:RefSeq_peptide;Acc:NP_510683]K08B5.1 [Source:RefSeq_peptide;Acc:NP_510683] BY ORTHOLOGY TO:K08B5.1
15.3108 -17.57 0.00482102 1300 4 2 5 [+] picture button
CBG16814 ENSCBRT00000012873 Enhanced RNAI (RNA interference) family member (eri-5) [Source:RefSeq_peptide;Acc:NP_500199]Enhanced RNAI (RNA interference) family member (eri-5) [Source:RefSeq_peptide;Acc:NP_500199] BY ORTHOLOGY TO:Y38F2AR.1
15.2423 -16.22 0.00490021 1300 3 1 2 [+] picture button
CBG12873 ENSCBRT00000013774 ATP/GTP binding protein 1 [Source:RefSeq_peptide;Acc:NP_056054]ATP/GTP binding protein 1 [Source:RefSeq_peptide;Acc:NP_056054] BY ORTHOLOGY TO:ENSGALT00000020569
15.2601 -16.47 0.00530171 1300 1 1 1 [+] picture button
CBG04114 ENSCBRT00000010088 Small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G) (Sm-G) (SmG). [Source:Uniprot/SWISSPROT;Acc:P62308]Small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G) (Sm-G) (SmG). [Source:Uniprot/SWISSPROT;Acc:P62308] BY ORTHOLOGY TO:ENSGACT00000017487
15.3979 -16.75 0.00565798 1300 3 1 3 [+] picture button
CBG02689 ENSCBRT00000007480 wrn-1 encodes an ortholog of human WRN, which when mutated leads to Werner syndrome (OMIM:277700), and one of four C. elegans homologs of the RecQ DNA helicase family that includes E. coli RecQ. by homology, WRN-1 is predicted to function as a helicase, DNA-dependent ATPase, and exonuclease that plays a key role in DNA replication, recombination, and repair. in C. elegans, loss of wrn-1 activity, via mutation or large-scale RNA-mediated interference (RNAi) screens, does not result in any obvious abnormalities, as animals are viable and fertile, have normal lifespans, and do not appear to have a high rate of genomic instability. [Source: WormBase]wrn-1 encodes an ortholog of human WRN, which when mutated leads to Werner syndrome (OMIM:277700), and one of four C. elegans homologs of the RecQ DNA helicase family that includes E. coli RecQ. by homology, WRN-1 is predicted to function as a helicase, DNA-dependent ATPase, and exonuclease that plays a key role in DNA replication, recombination, and repair. in C. elegans, loss of wrn-1 activity, via mutation or large-scale RNA-mediated interference (RNAi) screens, does not result in any obvious abnormalities, as animals are viable and fertile, have normal lifespans, and do not appear to have a high rate of genomic instability. [Source: WormBase] BY ORTHOLOGY TO:F18C5.2
16.077 -26.78 0.00565798 1300 3 1 3 [+] picture button
CBG18476 ENSCBRT00000000941 T01B11.1 [Source:RefSeq_peptide;Acc:NP_501437]T01B11.1 [Source:RefSeq_peptide;Acc:NP_501437] BY ORTHOLOGY TO:T01B11.1
15.1552 -13.81 0.00591518 1300 4 2 5 [+] picture button
CBG06745 ENSCBRT00000009626 C50B6.3 [Source:RefSeq_peptide;Acc:NP_506299]C50B6.3 [Source:RefSeq_peptide;Acc:NP_506299] BY ORTHOLOGY TO:C50B6.3
15.4953 -22.11 0.00595847 1300 4 2 8 [+] picture button
CBG22137 ENSCBRT00000004293 Semaphorin-2A precursor (Sema-2a) (Male abnormal protein 20). [Source:Uniprot/SWISSPROT;Acc:Q95XP4]Semaphorin-2A precursor (Sema-2a) (Male abnormal protein 20). [Source:Uniprot/SWISSPROT;Acc:Q95XP4] BY ORTHOLOGY TO:Y71G12B.20a
15.2 -19.9 0.00604685 1300 4 2 5 [+] picture button
CBG11536 ENSCBRT00000013801 C50B8.4 [Source:RefSeq_peptide;Acc:NP_506363]C50B8.4 [Source:RefSeq_peptide;Acc:NP_506363] BY ORTHOLOGY TO:C50B8.4
15.1614 -13.95 0.00621734 1300 5 2 6 [+] picture button
CBG06695 ENSCBRT00000009707 T10G3.1 [Source:RefSeq_peptide;Acc:NP_506343]T10G3.1 [Source:RefSeq_peptide;Acc:NP_506343] BY ORTHOLOGY TO:T10G3.1
15.1411 -19.61 0.00646673 1300 4 2 5 [+] picture button
CBG02771 ENSCBRT00000006048 Y38F1A.7 [Source:RefSeq_peptide;Acc:NP_496765]Y38F1A.7 [Source:RefSeq_peptide;Acc:NP_496765] BY ORTHOLOGY TO:Y38F1A.7
15.6019 -16.91 0.00682186 1300 3 1 3 [+] picture button
CBG01117 ENSCBRT00000005261 Y19D10A.5 [Source:RefSeq_peptide;Acc:NP_503656]Y19D10A.5 [Source:RefSeq_peptide;Acc:NP_503656] BY ORTHOLOGY TO:C01B4.8
15.9075 -21.52 0.00698536 1300 3 2 3 [+] picture button
CBG01427 ENSCBRT00000002511 nlp-13 encodes a predicted neuropeptide of the MSFamide family. expressed primarily in neurons or in the endocrine/secretory cells, and expression includes pharyngeal neurons that modulate pharyngeal pumping of food. [Source: WormBase]nlp-13 encodes a predicted neuropeptide of the MSFamide family. expressed primarily in neurons or in the endocrine/secretory cells, and expression includes pharyngeal neurons that modulate pharyngeal pumping of food. [Source: WormBase] BY ORTHOLOGY TO:E03D2.1
15.0704 -26.33 0.00709416 1300 3 1 3 [+] picture button
CBG23203 ENSCBRT00000012157 F57B7.2 [Source:RefSeq_peptide;Acc:NP_505900]F57B7.2 [Source:RefSeq_peptide;Acc:NP_505900] BY ORTHOLOGY TO:F57B7.2
15.203 -18.97 0.00714387 1300 7 2 14 [+] picture button
CBG10338 ENSCBRT00000009520 rgs-4 encodes a regulator of G protein signaling. by homology, RGS-4 is predicted to function as a GTPase-activating protein that binds G protein alpha subunits and negatively regulates heterotrimeric G protein signaling. loss of rgs-4 activity via RNAi or a deletion mutation results in no obvious defects, and likewise, rgs-4 overexpression has no measurable effect on egg-laying behavior, locomotion, or viability. the RGS-4 expression pattern has not yet been reported. [Source: WormBase]rgs-4 encodes a regulator of G protein signaling. by homology, RGS-4 is predicted to function as a GTPase-activating protein that binds G protein alpha subunits and negatively regulates heterotrimeric G protein signaling. loss of rgs-4 activity via RNAi or a deletion mutation results in no obvious defects, and likewise, rgs-4 overexpression has no measurable effect on egg-laying behavior, locomotion, or viability. the RGS-4 expression pattern has not yet been reported. [Source: WormBase] BY ORTHOLOGY TO:Y38E10A.21
16.5775 -23.05 0.00719083 1300 2 1 2 [+] picture button
CBG18148 ENSCBRT00000003321 ZK353.2 [Source:RefSeq_peptide;Acc:NP_498853]ZK353.2 [Source:RefSeq_peptide;Acc:NP_498853] BY ORTHOLOGY TO:ZK353.2
15.1307 -18.01 0.00733145 1300 4 2 4 [+] picture button
CBG13745 ENSCBRT00000012730 Serpentine Receptor, class Z family member (srz-29) [Source:RefSeq_peptide;Acc:NP_502634]Serpentine Receptor, class Z family member (srz-29) [Source:RefSeq_peptide;Acc:NP_502634] BY ORTHOLOGY TO:C08F11.9
15.8651 -16.93 0.00747619 1300 1 1 1 [+] picture button
CBG01827 ENSCBRT00000002902 Replication factor C subunit 3 (Replication factor C 38 kDa subunit) (RFC38) (Activator 1 38 kDa subunit) (A1 38 kDa subunit) (RF-C 38 kDa subunit). [Source:Uniprot/SWISSPROT;Acc:P40938]Replication factor C subunit 3 (Replication factor C 38 kDa subunit) (RFC38) (Activator 1 38 kDa subunit) (A1 38 kDa subunit) (RF-C 38 kDa subunit). [Source:Uniprot/SWISSPROT;Acc:P40938] BY ORTHOLOGY TO:ENSMODT00000012425
17.2101 -20.56 0.00750802 1300 4 2 5 [+] picture button
CBG12435 ENSCBRT00000013175 steroid receptor-interacting snf2 domain proteinsteroid receptor-interacting snf2 domain protein BY ORTHOLOGY TO:AAEL002647-RA
15.0388 -17.69 0.00758728 1300 2 1 3 [+] picture button
CBG09805 ENSCBRT00000008039 T20G5.12 [Source:RefSeq_peptide;Acc:NP_499259]T20G5.12 [Source:RefSeq_peptide;Acc:NP_499259] BY ORTHOLOGY TO:T20G5.12
15.1587 -18.65 0.00803752 1300 4 2 4 [+] picture button
CBG03670 ENSCBRT00000008743 Uncharacterized protein C1orf160. [Source:Uniprot/SWISSPROT;Acc:Q9H0R3]Uncharacterized protein C1orf160. [Source:Uniprot/SWISSPROT;Acc:Q9H0R3] BY ORTHOLOGY TO:ENSORLT00000005628
15.0091 -15.44 0.00808121 1300 7 2 7 [+] picture button
CBG12428 ENSCBRT00000013166 C31H5.5 [Source:RefSeq_peptide;Acc:NP_492432]C31H5.5 [Source:RefSeq_peptide;Acc:NP_492432] BY ORTHOLOGY TO:C31H5.5
15.0342 -20.72 0.00824278 1300 3 2 5 [+] picture button
CBG02841 ENSCBRT00000006229 ZK20.1 [Source:RefSeq_peptide;Acc:NP_496486]ZK20.1 [Source:RefSeq_peptide;Acc:NP_496486] BY ORTHOLOGY TO:ZK20.1
15.3365 -19.38 0.0085453 1300 2 2 2 [+] picture button
CBG23429 ENSCBRT00000011547 F55C5.4 [Source:RefSeq_peptide;Acc:NP_506080]F55C5.4 [Source:RefSeq_peptide;Acc:NP_506080] BY ORTHOLOGY TO:F55C5.4
15.2482 -22.39 0.00862398 1300 4 2 4 [+] picture button
CBG02456 ENSCBRT00000006526 C17G10.7 [Source:RefSeq_peptide;Acc:NP_495090]C17G10.7 [Source:RefSeq_peptide;Acc:NP_495090] BY ORTHOLOGY TO:C17G10.7
15.0377 -18.74 0.00865732 1300 4 2 7 [+] picture button
CBG07563 ENSCBRT00000011154 F54E4.2 [Source:RefSeq_peptide;Acc:NP_510432]F54E4.2 [Source:RefSeq_peptide;Acc:NP_510432] BY ORTHOLOGY TO:F54E4.2
15.0457 -16.42 0.0087078 1300 5 2 5 [+] picture button

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