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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-50

134 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG15840 ENSCBRT00000011313 Translation initiation factor eIF-2B subunit beta (eIF-2B GDP-GTP exchange factor subunit beta) (S20I15) (S20III15). [Source:Uniprot/SWISSPROT;Acc:P49770]Translation initiation factor eIF-2B subunit beta (eIF-2B GDP-GTP exchange factor subunit beta) (S20I15) (S20III15). [Source:Uniprot/SWISSPROT;Acc:P49770] BY ORTHOLOGY TO:ENSOANT00000013802
17.1227 -24.19 1e-06 1300 7 1 2 [+] picture button
CBG03187 ENSCBRT00000006887 F46C5.1 [Source:RefSeq_peptide;Acc:NP_495879]F46C5.1 [Source:RefSeq_peptide;Acc:NP_495879] BY ORTHOLOGY TO:F46C5.1
16.4681 -17.22 1.61123e-06 1300 3 2 3 [+] picture button
CBG05704 ENSCBRT00000009198 dual specificity protein phosphatase 7, putativedual specificity protein phosphatase 7, putative BY ORTHOLOGY TO:AAEL001145-RA
16.5495 -21.03 0.000771758 1300 2 2 2 [+] picture button
CBG23466 ENSCBRT00000011578 gcy-13 encodes a predicted guanylate cyclase. [Source: WormBase]gcy-13 encodes a predicted guanylate cyclase. [Source: WormBase] BY ORTHOLOGY TO:F23H12.6
16.5469 -21.28 0.000938903 1300 2 2 2 [+] picture button
CBG06233 ENSCBRT00000008224 M18.6 [Source:RefSeq_peptide;Acc:NP_502300]M18.6 [Source:RefSeq_peptide;Acc:NP_502300] BY ORTHOLOGY TO:M18.6
16.2518 -15.73 0.00105696 1300 4 1 3 [+] picture button
CBG15693 ENSCBRT00000011973 Y22D7AL.16 [Source:RefSeq_peptide;Acc:NP_497439]Y22D7AL.16 [Source:RefSeq_peptide;Acc:NP_497439] BY ORTHOLOGY TO:Y22D7AL.16
18.8934 -26.39 0.00152784 1300 5 1 4 [+] picture button
CBG24859 ENSCBRT00000010602 SEC14-like protein 2 (Alpha-tocopherol-associated protein) (TAP) (bTAP). [Source:Uniprot/SWISSPROT;Acc:P58875]SEC14-like protein 2 (Alpha-tocopherol-associated protein) (TAP) (bTAP). [Source:Uniprot/SWISSPROT;Acc:P58875] BY ORTHOLOGY TO:ENSBTAT00000023138
17.3369 -20.75 0.00156371 1300 5 1 3 [+] picture button
CBG10812 ENSCBRT00000012522 cysteine and histidine-rich domain (CHORD)-containing, zinc binding protein 1 [Source:RefSeq_peptide;Acc:NP_036256]cysteine and histidine-rich domain (CHORD)-containing, zinc binding protein 1 [Source:RefSeq_peptide;Acc:NP_036256] BY ORTHOLOGY TO:ENSMODT00000004008
16.7956 -13.76 0.00165203 1300 5 1 6 [+] picture button
CBG17713 ENSCBRT00000000157 F20D12.7 [Source:RefSeq_peptide;Acc:NP_741455]F20D12.7 [Source:RefSeq_peptide;Acc:NP_741455] BY ORTHOLOGY TO:F20D12.7
17.116 -23.98 0.00314382 1300 2 1 2 [+] picture button
CBG07588 ENSCBRT00000011132 Y16B4A.2 [Source:RefSeq_peptide;Acc:NP_510452]Y16B4A.2 [Source:RefSeq_peptide;Acc:NP_510452] BY ORTHOLOGY TO:Y16B4A.2
16.4325 -17.51 0.00329748 1300 2 1 1 [+] picture button
CBG02139 ENSCBRT00000004204 T01B6.3a [Source:RefSeq_peptide;Acc:NP_741725]T01B6.3a [Source:RefSeq_peptide;Acc:NP_741725] BY ORTHOLOGY TO:T01B6.3a
16.0059 -17.03 0.00353527 1300 1 2 2 [+] picture button
CBG02828 ENSCBRT00000006246 CLASS C ACETYLCHOLINESTERASE (EC 3.1.1.7). [Source:SPTREMBL;Acc:Q9NDG9]
15.9473 -11.52 0.00394664 1300 3 2 3 [+] picture button
CBG01032 ENSCBRT00000002084 T10B9.9 [Source:RefSeq_peptide;Acc:NP_496107]T10B9.9 [Source:RefSeq_peptide;Acc:NP_496107] BY ORTHOLOGY TO:T10B9.9
15.8363 -21.59 0.00410762 1300 3 2 4 [+] picture button
CBG20632 ENSCBRT00000001424 Probable glutathione S-transferase 5 (EC 2.5.1.18) (GST class-sigma). [Source:Uniprot/SWISSPROT;Acc:Q09596]Probable glutathione S-transferase 5 (EC 2.5.1.18) (GST class-sigma). [Source:Uniprot/SWISSPROT;Acc:Q09596] BY ORTHOLOGY TO:R03D7.6
15.9544 -14.38 0.00460005 1300 2 1 3 [+] picture button
CBG23685 ENSCBRT00000003526 CG6599-PA [Source:RefSeq_peptide;Acc:NP_651560]CG6599-PA [Source:RefSeq_peptide;Acc:NP_651560] BY ORTHOLOGY TO:CG6599-RA
15.7138 -11.17 0.00490334 1300 3 1 3 [+] picture button
CBG15947 ENSCBRT00000014228 T08G2.2 [Source:RefSeq_peptide;Acc:NP_510787]T08G2.2 [Source:RefSeq_peptide;Acc:NP_510787] BY ORTHOLOGY TO:T08G2.2
15.7516 -22.98 0.00554655 1300 2 1 2 [+] picture button
CBG19225 ENSCBRT00000013433 C02H6.1 [Source:RefSeq_peptide;Acc:NP_504891]C02H6.1 [Source:RefSeq_peptide;Acc:NP_504891] BY ORTHOLOGY TO:C02H6.1
17.7915 -19.24 0.00620697 1300 2 1 4 [+] picture button
CBG11453 ENSCBRT00000013892 Serpentine Receptor, class SX family member (srsx-19) [Source:RefSeq_peptide;Acc:NP_506442]Serpentine Receptor, class SX family member (srsx-19) [Source:RefSeq_peptide;Acc:NP_506442] BY ORTHOLOGY TO:T22G5.4
15.5583 -13.18 0.00626113 1300 4 1 4 [+] picture button
CBG03023 ENSCBRT00000007035 C52A11.2 [Source:RefSeq_peptide;Acc:NP_496314]C52A11.2 [Source:RefSeq_peptide;Acc:NP_496314] BY ORTHOLOGY TO:C52A11.2
15.7084 -20.38 0.00667791 1300 3 1 3 [+] picture button
CBG08107 ENSCBRT00000003645 hypothetical protein LOC511447 [Source:RefSeq_peptide;Acc:NP_001039551]hypothetical protein LOC511447 [Source:RefSeq_peptide;Acc:NP_001039551] BY ORTHOLOGY TO:ENSBTAT00000000617
17.7204 -25.23 0.00674381 1300 2 1 2 [+] picture button
CBG05404 ENSCBRT00000004693 F38A5.11 [Source:RefSeq_peptide;Acc:NP_501009]F38A5.11 [Source:RefSeq_peptide;Acc:NP_501009] BY ORTHOLOGY TO:F38A5.11
15.9448 -26.35 0.00743909 1300 5 1 4 [+] picture button
CBG03927 ENSCBRT00000010003 T10B11.5 [Source:RefSeq_peptide;Acc:NP_491979]T10B11.5 [Source:RefSeq_peptide;Acc:NP_491979] BY ORTHOLOGY TO:T10B11.5
15.4732 -21.63 0.0075171 1300 5 1 6 [+] picture button
CBG05104 ENSCBRT00000010307 ptr-11 encodes a nematode-specific member of the sterol sensing domain (SSD) proteins, distantly paralogous to Drosophila PATCHED (PTC) and human PTCH (OMIM:601309, mutated in basal cell nevus syndrome). PTR-11 is required for normal growth to full size, locomotion, and vulval morphogenesis. [Source: WormBase]ptr-11 encodes a nematode-specific member of the sterol sensing domain (SSD) proteins, distantly paralogous to Drosophila PATCHED (PTC) and human PTCH (OMIM:601309, mutated in basal cell nevus syndrome). PTR-11 is required for normal growth to full size, locomotion, and vulval morphogenesis. [Source: WormBase] BY ORTHOLOGY TO:F56C11.2
15.7302 -10.36 0.00829882 1300 5 1 7 [+] picture button
CBG02201 ENSCBRT00000004971 Blimp1 (B Lymphocyte-induced Maturation Protein-1) homolog family member (blmp-1) [Source:RefSeq_peptide;Acc:NP_492723]Blimp1 (B Lymphocyte-induced Maturation Protein-1) homolog family member (blmp-1) [Source:RefSeq_peptide;Acc:NP_492723] BY ORTHOLOGY TO:F25D7.3
16.1993 -14.97 0.00847223 1300 2 1 2 [+] picture button
CBG23211 ENSCBRT00000012172 Zinc metalloproteinase nas-20 precursor (EC 3.4.24.21) (Nematode astacin 20). [Source:Uniprot/SWISSPROT;Acc:Q22396]Zinc metalloproteinase nas-20 precursor (EC 3.4.24.21) (Nematode astacin 20). [Source:Uniprot/SWISSPROT;Acc:Q22396] BY ORTHOLOGY TO:T11F9.3
15.4255 -16.49 0.00860305 1300 4 1 3 [+] picture button
CBG12435 ENSCBRT00000013175 steroid receptor-interacting snf2 domain proteinsteroid receptor-interacting snf2 domain protein BY ORTHOLOGY TO:AAEL002647-RA
15.3963 -9.78 0.00885591 1300 2 1 3 [+] picture button
CBG03407 ENSCBRT00000007169 T14G10.4 [Source:RefSeq_peptide;Acc:NP_501855]T14G10.4 [Source:RefSeq_peptide;Acc:NP_501855] BY ORTHOLOGY TO:T14G10.4
15.7836 -21.98 0.00907365 1300 1 1 1 [+] picture button
CBG00861 ENSCBRT00000003969 pax-3 encodes a divergent paired-like homeodomain protein that does not belong to the Q50, K50, or S50 classes. PAX-3 is required for locomotion and vulval development. pax-3(RNAi) animals have consistent Pvl and Unc phenotypes (as well as less consistent Bmd, Rup, and Stp phenotypes). [Source: WormBase]pax-3 encodes a divergent paired-like homeodomain protein that does not belong to the Q50, K50, or S50 classes. PAX-3 is required for locomotion and vulval development. pax-3(RNAi) animals have consistent Pvl and Unc phenotypes (as well as less consistent Bmd, Rup, and Stp phenotypes). [Source: WormBase] BY ORTHOLOGY TO:F27E5.2
17.3327 -16.97 0.0105916 1300 1 1 1 [+] picture button
CBG06536 ENSCBRT00000010777 Serpentine Receptor, class W family member (srw-103) [Source:RefSeq_peptide;Acc:NP_503489]Serpentine Receptor, class W family member (srw-103) [Source:RefSeq_peptide;Acc:NP_503489] BY ORTHOLOGY TO:ZK697.5
17.2733 -21.82 0.0113492 1300 2 1 2 [+] picture button
CBG00919 ENSCBRT00000003934 C01G6.3 [Source:RefSeq_peptide;Acc:NP_495975]C01G6.3 [Source:RefSeq_peptide;Acc:NP_495975] BY ORTHOLOGY TO:C01G6.3
17.2466 -22.34 0.011706 1300 3 1 3 [+] picture button
CBG24193 ENSCBRT00000004395 T24C4.2 [Source:RefSeq_peptide;Acc:NP_497280]T24C4.2 [Source:RefSeq_peptide;Acc:NP_497280] BY ORTHOLOGY TO:T24C4.2
17.2217 -17.36 0.0120489 1300 2 1 3 [+] picture button
CBG07034 ENSCBRT00000012406 T27A1.4 [Source:RefSeq_peptide;Acc:NP_493752]T27A1.4 [Source:RefSeq_peptide;Acc:NP_493752] BY ORTHOLOGY TO:T27A1.4
17.2139 -20.44 0.0121579 1300 1 1 1 [+] picture button
CBG02467 ENSCBRT00000006516 C25H3.12 [Source:RefSeq_peptide;Acc:NP_495107]C25H3.12 [Source:RefSeq_peptide;Acc:NP_495107] BY ORTHOLOGY TO:C25H3.12
17.2011 -20.94 0.0123404 1300 4 1 3 [+] picture button
CBG02584 ENSCBRT00000007546 F40H3.3 [Source:RefSeq_peptide;Acc:NP_495231]F40H3.3 [Source:RefSeq_peptide;Acc:NP_495231] BY ORTHOLOGY TO:F40H3.3
17.1929 -18.31 0.0124591 1300 2 1 2 [+] picture button
CBG09601 ENSCBRT00000005861 Cdc-42 Related Protein family member (crp-1) [Source:RefSeq_peptide;Acc:NP_505688]Cdc-42 Related Protein family member (crp-1) [Source:RefSeq_peptide;Acc:NP_505688] BY ORTHOLOGY TO:Y32F6B.3
17.1816 -22.08 0.012623 1300 3 1 7 [+] picture button
CBG07695 ENSCBRT00000010659 The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). [Source: WormBase]The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). [Source: WormBase] BY ORTHOLOGY TO:F39D8.1b
17.1136 -14.26 0.0136582 1300 2 1 3 [+] picture button
CBG14285 ENSCBRT00000002717 F35A5.4 [Source:RefSeq_peptide;Acc:NP_508657]F35A5.4 [Source:RefSeq_peptide;Acc:NP_508657] BY ORTHOLOGY TO:F35A5.4
17.0859 -33.66 0.0141038 1300 6 1 5 [+] picture button
CBG05250 ENSCBRT00000003897 nlp-3 encodes a neuropeptide-like protein of the GFxGF family with similarity to orcokinins, highly conserved peptides native to crustaceans that enhance hindgut contractions. NLP-3 is expressed in neurons in the head, pharynx, and vulva, and in the intestine. the precise role of NLP-3 in nervous system function and development is not yet clear. [Source: WormBase]nlp-3 encodes a neuropeptide-like protein of the GFxGF family with similarity to orcokinins, highly conserved peptides native to crustaceans that enhance hindgut contractions. NLP-3 is expressed in neurons in the head, pharynx, and vulva, and in the intestine. the precise role of NLP-3 in nervous system function and development is not yet clear. [Source: WormBase] BY ORTHOLOGY TO:F48C11.3
17.0295 -19.54 0.0150542 1300 2 1 4 [+] picture button
CBG05708 ENSCBRT00000009195 Serpentine Receptor, class X family member (srx-19) [Source:RefSeq_peptide;Acc:NP_501057]Serpentine Receptor, class X family member (srx-19) [Source:RefSeq_peptide;Acc:NP_501057] BY ORTHOLOGY TO:T05A12.1
17.0078 -19.67 0.0154361 1300 5 1 5 [+] picture button
CBG24559 ENSCBRT00000012665 hypothetical proteinhypothetical protein BY ORTHOLOGY TO:AAEL005128-RA
16.943 -23.98 0.0166361 1300 3 1 7 [+] picture button
CBG04093 ENSCBRT00000009824 T01G9.1 [Source:RefSeq_peptide;Acc:NP_492251]T01G9.1 [Source:RefSeq_peptide;Acc:NP_492251] BY ORTHOLOGY TO:T01G9.1
16.9401 -20.6 0.0166919 1300 3 1 3 [+] picture button
CBG04327 ENSCBRT00000007697 T19D12.5 [Source:RefSeq_peptide;Acc:NP_495349]T19D12.5 [Source:RefSeq_peptide;Acc:NP_495349] BY ORTHOLOGY TO:T19D12.5
16.9302 -22.26 0.016885 1300 3 1 3 [+] picture button
CBG05913 ENSCBRT00000008997 F32E10.8 [Source:RefSeq_peptide;Acc:NP_501228]F32E10.8 [Source:RefSeq_peptide;Acc:NP_501228] BY ORTHOLOGY TO:F32E10.8
16.9112 -16.98 0.0172591 1300 4 1 6 [+] picture button
CBG09859 ENSCBRT00000007986 RNA binding motif and ELMO domain 1 [Source:RefSeq_peptide;Acc:NP_115589]RNA binding motif and ELMO domain 1 [Source:RefSeq_peptide;Acc:NP_115589] BY ORTHOLOGY TO:ENSCAFT00000012454
16.9077 -21.67 0.0173298 1300 5 1 5 [+] picture button
CBG16832 ENSCBRT00000012756 NOT ANNOTATED
16.8891 -27.6 0.0177058 1300 3 2 3 [+] picture button
CBG23028 ENSCBRT00000008852 hypothetical protein LOC445096 [Source:RefSeq_peptide;Acc:NP_001003490]hypothetical protein LOC445096 [Source:RefSeq_peptide;Acc:NP_001003490] BY ORTHOLOGY TO:ENSDART00000008416
16.8716 -15.82 0.0180664 1300 6 1 8 [+] picture button
CBG05674 ENSCBRT00000005414 Seven TM Receptor family member (str-93) [Source:RefSeq_peptide;Acc:NP_001023998]Seven TM Receptor family member (str-93) [Source:RefSeq_peptide;Acc:NP_001023998] BY ORTHOLOGY TO:F59A1.14
16.8606 -24.89 0.0182962 1300 4 1 9 [+] picture button
CBG12065 ENSCBRT00000011660 RIKEN cDNA 4921504I05 gene [Source:MarkerSymbol;Acc:MGI:1913957]RIKEN cDNA 4921504I05 gene [Source:MarkerSymbol;Acc:MGI:1913957] BY ORTHOLOGY TO:ENSMUST00000068235
16.8472 -17.46 0.0185816 1300 8 2 10 [+] picture button
CBG06883 ENSCBRT00000007339 Probable glutathione reductase 2 (EC 1.8.1.7) (GR) (GRase). [Source:Uniprot/SWISSPROT;Acc:P30635]Probable glutathione reductase 2 (EC 1.8.1.7) (GR) (GRase). [Source:Uniprot/SWISSPROT;Acc:P30635] BY ORTHOLOGY TO:ZK637.10
16.7545 -19.11 0.020675 1300 3 1 3 [+] picture button
CBG15445 ENSCBRT00000010764 ZK721.3 [Source:RefSeq_peptide;Acc:NP_509487]ZK721.3 [Source:RefSeq_peptide;Acc:NP_509487] BY ORTHOLOGY TO:ZK721.3
16.7213 -14.13 0.0214788 1300 3 1 3 [+] picture button

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Download table: GFF TXT
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