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Target Listing


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Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-49

219 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG23204 ENSCBRT00000012159 CG9850-PB, isoform B [Source:RefSeq_peptide;Acc:NP_001027572]CG9850-PB, isoform B [Source:RefSeq_peptide;Acc:NP_001027572] BY ORTHOLOGY TO:CG9850-RA
15.3236 -21.4 6.10449e-07 1300 4 2 3 [+] picture button
CBG11920 ENSCBRT00000011775 C15A11.4 [Source:RefSeq_peptide;Acc:NP_492089]C15A11.4 [Source:RefSeq_peptide;Acc:NP_492089] BY ORTHOLOGY TO:C15A11.4
16.6283 -23.47 1e-06 1300 4 1 2 [+] picture button
CBG02562 ENSCBRT00000007565 R12C12.9a [Source:RefSeq_peptide;Acc:NP_495203]R12C12.9a [Source:RefSeq_peptide;Acc:NP_495203] BY ORTHOLOGY TO:R12C12.9b
16.8839 -20 1e-06 1300 7 2 5 [+] picture button
CBG07437 ENSCBRT00000011094 H06A10.1 [Source:RefSeq_peptide;Acc:NP_510255]H06A10.1 [Source:RefSeq_peptide;Acc:NP_510255] BY ORTHOLOGY TO:H06A10.1
15.6612 -17.36 3.56914e-06 1300 5 2 3 [+] picture button
CBG23186 ENSCBRT00000012133 UPF0392 protein F55C10.4. [Source:Uniprot/SWISSPROT;Acc:Q20806]UPF0392 protein F55C10.4. [Source:Uniprot/SWISSPROT;Acc:Q20806] BY ORTHOLOGY TO:F55C10.4
14.7861 -25.06 4.54977e-05 1300 4 1 2 [+] picture button
CBG04021 ENSCBRT00000009926 F33D11.8 [Source:RefSeq_peptide;Acc:NP_491699]F33D11.8 [Source:RefSeq_peptide;Acc:NP_491699] BY ORTHOLOGY TO:F33D11.8
17.6393 -26.44 5.51161e-05 1300 5 1 6 [+] picture button
CBG23750 ENSCBRT00000008585 C29F4.2 [Source:RefSeq_peptide;Acc:NP_502108]C29F4.2 [Source:RefSeq_peptide;Acc:NP_502108] BY ORTHOLOGY TO:C29F4.2
16.3724 -22.2 5.51161e-05 1300 5 1 3 [+] picture button
CBG06229 ENSCBRT00000008245 asparagine synthetase domain containing 1 [Source:RefSeq_peptide;Acc:NP_001029852]asparagine synthetase domain containing 1 [Source:RefSeq_peptide;Acc:NP_001029852] BY ORTHOLOGY TO:ENSBTAT00000000622
14.5208 -18.23 9.3363e-05 1300 8 1 4 [+] picture button
CBG11380 ENSCBRT00000014029 col-43 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens. [Source: WormBase]col-43 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens. [Source: WormBase] BY ORTHOLOGY TO:ZC513.8
17.0546 -25.38 0.000121232 1300 8 2 8 [+] picture button
CBG01526 ENSCBRT00000001846 ZK994.3 [Source:RefSeq_peptide;Acc:NP_505188]ZK994.3 [Source:RefSeq_peptide;Acc:NP_505188] BY ORTHOLOGY TO:ZK994.3
16.3121 -23.93 0.000243152 1300 3 2 3 [+] picture button
CBG01831 ENSCBRT00000002909 C39E9.10 [Source:RefSeq_peptide;Acc:NP_502513]C39E9.10 [Source:RefSeq_peptide;Acc:NP_502513] BY ORTHOLOGY TO:C39E9.10
17.4204 -19.4 0.000289207 1300 5 1 5 [+] picture button
CBG05817 ENSCBRT00000009071 D2024.2 [Source:RefSeq_peptide;Acc:NP_501149]D2024.2 [Source:RefSeq_peptide;Acc:NP_501149] BY ORTHOLOGY TO:D2024.2
16.8698 -26.68 0.000290822 1300 2 1 3 [+] picture button
CBG01087 ENSCBRT00000005247 Uncharacterized protein C18orf8 (Colon cancer-associated protein Mic1) (Mic-1). [Source:Uniprot/SWISSPROT;Acc:Q96DM3]Uncharacterized protein C18orf8 (Colon cancer-associated protein Mic1) (Mic-1). [Source:Uniprot/SWISSPROT;Acc:Q96DM3] BY ORTHOLOGY TO:SINFRUT00000176703
16.0352 -17.74 0.000409172 1300 2 1 3 [+] picture button
CBG11301 ENSCBRT00000014401 Seven TM Receptor family member (str-135) [Source:RefSeq_peptide;Acc:NP_505138]Seven TM Receptor family member (str-135) [Source:RefSeq_peptide;Acc:NP_505138] BY ORTHOLOGY TO:F21F8.10
15.9826 -22.22 0.000652401 1300 6 2 8 [+] picture button
CBG15975 ENSCBRT00000014237 The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). [Source: WormBase]The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). [Source: WormBase] BY ORTHOLOGY TO:F35B3.5a
15.7892 -20.5 0.00115619 1300 5 2 5 [+] picture button
CBG10768 ENSCBRT00000012560 Sperm Specific Transcript family member (sst-20) [Source:RefSeq_peptide;Acc:NP_491498]Sperm Specific Transcript family member (sst-20) [Source:RefSeq_peptide;Acc:NP_491498] BY ORTHOLOGY TO:F54C1.9
15.4948 -19.71 0.00117449 1300 4 1 5 [+] picture button
CBG01473 ENSCBRT00000001886 grd-5 encodes a hedgehog-like protein, with an N-terminal signal sequence and a C-terminal Ground domain. GRD-5 is expressed in adult anterior and posterior seam cells, overlapping GRD-3 expression. the Ground domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins. GRD-5 is weakly required for normal molting. GRD-5 is also required for normal adult alae formation, growth to full size, and locomotion. all of these requirements may reflect common defects in cholesterol-dependent hedgehog-like signalling or in vesicle trafficking. [Source: WormBase]grd-5 encodes a hedgehog-like protein, with an N-terminal signal sequence and a C-terminal Ground domain. GRD-5 is expressed in adult anterior and posterior seam cells, overlapping GRD-3 expression. the Ground domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins. GRD-5 is weakly required for normal molting. GRD-5 is also required for normal adult alae formation, growth to full size, and locomotion. all of these requirements may reflect common defects in cholesterol-dependent hedgehog-like signalling or in vesicle trafficking. [Source: WormBase] BY ORTHOLOGY TO:F41E6.2
16.3554 -18.7 0.00121335 1300 6 1 8 [+] picture button
ENSCBRT00000004836 Y46G5A.10 [Source:RefSeq_peptide;Acc:NP_496715]Y46G5A.10 [Source:RefSeq_peptide;Acc:NP_496715] BY ORTHOLOGY TO:Y46G5A.10
15.0656 -19.81 0.00125089 1300 9 1 5 [+] picture button
CBG12413 ENSCBRT00000013156 F32H2.7 [Source:RefSeq_peptide;Acc:NP_492420]F32H2.7 [Source:RefSeq_peptide;Acc:NP_492420] BY ORTHOLOGY TO:F32H2.7
16.5673 -22.62 0.00127503 1300 8 2 10 [+] picture button
CBG15212 ENSCBRT00000010392 strawberry notch homolog 2 (Drosophila) [Source:MarkerSymbol;Acc:MGI:2448490]strawberry notch homolog 2 (Drosophila) [Source:MarkerSymbol;Acc:MGI:2448490] BY ORTHOLOGY TO:ENSMUST00000042771
16.0953 -18.97 0.00138728 1300 5 1 5 [+] picture button
CBG20858 ENSCBRT00000001285 C01G12.1 [Source:RefSeq_peptide;Acc:NP_497028]C01G12.1 [Source:RefSeq_peptide;Acc:NP_497028] BY ORTHOLOGY TO:C01G12.1
15.5018 -15.35 0.00141755 1300 7 1 12 [+] picture button
CBG02030 ENSCBRT00000005888 F53B3.5 encodes a claudin homolog that may regulate ion channels. F53B3.5 is distantly similar to mammalian voltage-dependent calcium channel gamma subunits that are known or suspected to prevent epilepsy in vivo (e.g., stargazin. MGI:1316660). F53B3.5 has no obvious function in mass RNAi assays. claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water. [Source: WormBase]F53B3.5 encodes a claudin homolog that may regulate ion channels. F53B3.5 is distantly similar to mammalian voltage-dependent calcium channel gamma subunits that are known or suspected to prevent epilepsy in vivo (e.g., stargazin. MGI:1316660). F53B3.5 has no obvious function in mass RNAi assays. claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water. [Source: WormBase] BY ORTHOLOGY TO:F53B3.5
15.9275 -15.99 0.00150601 1300 2 2 3 [+] picture button
CBG10871 ENSCBRT00000001300 A homolog of a non-alpha type nicotinic acetylcholine receptor subunit that forms a functional channel when co-expressed with the unc-38 alpha subunit. [Source: WormBase]A homolog of a non-alpha type nicotinic acetylcholine receptor subunit that forms a functional channel when co-expressed with the unc-38 alpha subunit. [Source: WormBase] BY ORTHOLOGY TO:K11G12.2
15.0182 -22.65 0.00163013 1300 5 1 6 [+] picture button
CBG18255 ENSCBRT00000001688 Carbohydrate kinase-like protein (EC 2.7.1.-). [Source:Uniprot/SWISSPROT;Acc:Q9UHJ6]Carbohydrate kinase-like protein (EC 2.7.1.-). [Source:Uniprot/SWISSPROT;Acc:Q9UHJ6] BY ORTHOLOGY TO:ENSGACT00000026814
16.08 -23.72 0.00166039 1300 5 2 4 [+] picture button
CBG11983 ENSCBRT00000011745 T28F2.7 [Source:RefSeq_peptide;Acc:NP_491196]T28F2.7 [Source:RefSeq_peptide;Acc:NP_491196] BY ORTHOLOGY TO:T28F2.7
16.6678 -17.89 0.00168348 1300 7 1 9 [+] picture button
CBG10721 ENSCBRT00000012474 F56B3.2a [Source:RefSeq_peptide;Acc:NP_499983]F56B3.2a [Source:RefSeq_peptide;Acc:NP_499983] BY ORTHOLOGY TO:F56B3.2b
15.1838 -15.44 0.00172402 1300 11 1 9 [+] picture button
CBG02513 ENSCBRT00000006475 ZK1248.13 [Source:RefSeq_peptide;Acc:NP_495158]ZK1248.13 [Source:RefSeq_peptide;Acc:NP_495158] BY ORTHOLOGY TO:ZK1248.13
15.0171 -25.08 0.00195006 1300 4 1 2 [+] picture button
CBG07050 ENSCBRT00000012418 K01A2.10 [Source:RefSeq_peptide;Acc:NP_493709]K01A2.10 [Source:RefSeq_peptide;Acc:NP_493709] BY ORTHOLOGY TO:K01A2.10
15.5928 -20.59 0.00198182 1300 4 1 9 [+] picture button
CBG16211 ENSCBRT00000012614 W03G11.2 [Source:RefSeq_peptide;Acc:NP_510022]W03G11.2 [Source:RefSeq_peptide;Acc:NP_510022] BY ORTHOLOGY TO:W03G11.2
15.8347 -20.19 0.00218375 1300 4 1 3 [+] picture button
CBG17683 ENSCBRT00000002258 The ric-3 gene encodes a novel, highly charged protein with two transmembrane domains and extensive coiled-coil domains. it is necessary for the function of at least four nicotinic acetylcholine receptors. specifically, it is needed for assembly or trafficking of the DEG-3 nicotinic acetylcholine receptor. [Source: WormBase]The ric-3 gene encodes a novel, highly charged protein with two transmembrane domains and extensive coiled-coil domains. it is necessary for the function of at least four nicotinic acetylcholine receptors. specifically, it is needed for assembly or trafficking of the DEG-3 nicotinic acetylcholine receptor. [Source: WormBase] BY ORTHOLOGY TO:T14A8.1
15.9826 -25.19 0.00236335 1300 5 1 5 [+] picture button
CBG05639 ENSCBRT00000005438 conserved hypothetical proteinconserved hypothetical protein BY ORTHOLOGY TO:AAEL007910-RA
15.1146 -14.25 0.00248932 1300 3 1 5 [+] picture button
CBG11259 ENSCBRT00000014511 F52E1.9 [Source:RefSeq_peptide;Acc:NP_505169]F52E1.9 [Source:RefSeq_peptide;Acc:NP_505169] BY ORTHOLOGY TO:F52E1.9
15.1261 -13.42 0.0025501 1300 4 1 5 [+] picture button
CBG04646 ENSCBRT00000010534 F47B8.3 [Source:RefSeq_peptide;Acc:NP_506549]F47B8.3 [Source:RefSeq_peptide;Acc:NP_506549] BY ORTHOLOGY TO:F47B8.3
15.3389 -24.31 0.00265676 1300 9 1 7 [+] picture button
CBG06264 ENSCBRT00000007066 C42C1.3 [Source:RefSeq_peptide;Acc:NP_502331]C42C1.3 [Source:RefSeq_peptide;Acc:NP_502331] BY ORTHOLOGY TO:C42C1.3
15.2589 -19.58 0.0028682 1300 5 2 5 [+] picture button
CBG19030 ENSCBRT00000014073 T15B7.15 [Source:RefSeq_peptide;Acc:NP_504739]T15B7.15 [Source:RefSeq_peptide;Acc:NP_504739] BY ORTHOLOGY TO:T15B7.15
15.7877 -15.9 0.00286939 1300 4 2 4 [+] picture button
CBG09833 ENSCBRT00000008011 LEThal family member (let-805) [Source:RefSeq_peptide;Acc:NP_001022641]LEThal family member (let-805) [Source:RefSeq_peptide;Acc:NP_001022641] BY ORTHOLOGY TO:H19M22.2c
14.9936 -18.82 0.0029664 1300 5 2 7 [+] picture button
ENSCBRT00000001683 Y48A6B.2 [Source:RefSeq_peptide;Acc:NP_499412]Y48A6B.2 [Source:RefSeq_peptide;Acc:NP_499412] BY ORTHOLOGY TO:Y48A6B.2
14.6426 -16.9 0.00320941 1300 5 1 5 [+] picture button
CBG12245 ENSCBRT00000013310 ncl-1 encodes a cytoplasmic B-box zinc finger protein that negatively regulates rRNA and 5S RNA transcription, nucleolus size, and body size. NCL-1 is orthologous to Drosophila BRAIN TUMOR (BRAT), and ncl-1 mutants can be rescued by brat transgenes. NCL-1 is required for the normally small size of neuronal, muscle, and hypodermal nucleoli, and is already active in 4-cell embryos. NCL-1 may be a repressor of RNA polymerase I and III transcription and an inhibitor of cell growth, based on mutant analysis. ncl-1 animals have much larger neuronal nucleoli than normal, somewhat larger muscle and hypodermal nucleoli, but essentially normal intestinal and germline nucleoli (the last of which are large even in wild-type animals). conversely, intestinal and germline cells have the lowest amounts of NCL-1 protein. ncl-1 animals are 9% larger, have 22% more protein and twice as much rRNA, and transcribe rRNA twice as much as wild-type worms. ncl-1 functions cell autonomously, and ncl-1 mutations suppress the tumorous germline phenotype of pro-1(na48) mutants. [Source: WormBase]ncl-1 encodes a cytoplasmic B-box zinc finger protein that negatively regulates rRNA and 5S RNA transcription, nucleolus size, and body size. NCL-1 is orthologous to Drosophila BRAIN TUMOR (BRAT), and ncl-1 mutants can be rescued by brat transgenes. NCL-1 is required for the normally small size of neuronal, muscle, and hypodermal nucleoli, and is already active in 4-cell embryos. NCL-1 may be a repressor of RNA polymerase I and III transcription and an inhibitor of cell growth, based on mutant analysis. ncl-1 animals have much larger neuronal nucleoli than normal, somewhat larger muscle and hypodermal nucleoli, but essentially normal intestinal and germline nucleoli (the last of which are large even in wild-type animals). conversely, intestinal and germline cells have the lowest amounts of NCL-1 protein. ncl-1 animals are 9% larger, have 22% more protein and twice as much rRNA, and transcribe rRNA twice as much as wild-type worms. ncl-1 functions cell autonomously, and ncl-1 mutations suppress the tumorous germline phenotype of pro-1(na48) mutants. [Source: WormBase] BY ORTHOLOGY TO:ZK112.2
15.4407 -13.88 0.00328191 1300 3 1 3 [+] picture button
ENSCBRT00000009463 ZK892.5 [Source:RefSeq_peptide;Acc:NP_496164]ZK892.5 [Source:RefSeq_peptide;Acc:NP_496164] BY ORTHOLOGY TO:ZK892.5
15.8947 -18.6 0.00329901 1300 3 1 4 [+] picture button
CBG21510 ENSCBRT00000003797 Y57G11C.14 [Source:RefSeq_peptide;Acc:NP_502792]Y57G11C.14 [Source:RefSeq_peptide;Acc:NP_502792] BY ORTHOLOGY TO:Y57G11C.14
14.9186 -20.15 0.00333227 1300 1 1 1 [+] picture button
CBG08701 ENSCBRT00000002899 conserved hypothetical proteinconserved hypothetical protein BY ORTHOLOGY TO:AAEL006799-RA
14.5155 -19.53 0.00338242 1300 4 1 3 [+] picture button
CBG02100 ENSCBRT00000004176 K02E10.6 [Source:RefSeq_peptide;Acc:NP_508451]K02E10.6 [Source:RefSeq_peptide;Acc:NP_508451] BY ORTHOLOGY TO:K02E10.6
16.0664 -23.67 0.00360501 1300 8 1 7 [+] picture button
CBG19924 ENSCBRT00000002445 The fem-1 gene encodes an ankyrin repeat-containing protein orthologous to human FEM1A and is required for masculinization of germline and somatic tissues. FEM-1 is widely expressed and functions as a second messenger in the sex determination pathway, connecting the membrane protein TRA-2A to the transcription factor TRA-1A which it negatively regulates. FEM-1 may also play a role in apoptosis, as it is a substrate for the CED-3 protease and can induce apoptosis when overexpressed in mammalian cells. [Source: WormBase]The fem-1 gene encodes an ankyrin repeat-containing protein orthologous to human FEM1A and is required for masculinization of germline and somatic tissues. FEM-1 is widely expressed and functions as a second messenger in the sex determination pathway, connecting the membrane protein TRA-2A to the transcription factor TRA-1A which it negatively regulates. FEM-1 may also play a role in apoptosis, as it is a substrate for the CED-3 protease and can induce apoptosis when overexpressed in mammalian cells. [Source: WormBase] BY ORTHOLOGY TO:F35D6.1a
15.8963 -19.54 0.00361444 1300 4 2 3 [+] picture button
CBG18375 ENSCBRT00000001576 F43D9.1 [Source:RefSeq_peptide;Acc:NP_499313]F43D9.1 [Source:RefSeq_peptide;Acc:NP_499313] BY ORTHOLOGY TO:F43D9.1
14.9655 -14.63 0.00362551 1300 4 2 6 [+] picture button
CBG02398 ENSCBRT00000006611 Serpentine Receptor, class X family member (srx-114) [Source:RefSeq_peptide;Acc:NP_740990]Serpentine Receptor, class X family member (srx-114) [Source:RefSeq_peptide;Acc:NP_740990] BY ORTHOLOGY TO:F07F6.9
14.6182 -22.62 0.00398301 1300 5 1 2 [+] picture button
CBG15014 ENSCBRT00000004394 Serpentine Receptor, class E (epsilon) family member (sre-4) [Source:RefSeq_peptide;Acc:NP_501746]Serpentine Receptor, class E (epsilon) family member (sre-4) [Source:RefSeq_peptide;Acc:NP_501746] BY ORTHOLOGY TO:T13F2.5
14.8026 -15.92 0.00407449 1300 4 1 4 [+] picture button
CBG09148 ENSCBRT00000008903 The cup-5 gene encodes an ortholog of the human mucolipin-1 gene, and is required for the normal, negative regulation of endocytotic uptake of markers from pseudocoelomic fluid. [Source: WormBase]The cup-5 gene encodes an ortholog of the human mucolipin-1 gene, and is required for the normal, negative regulation of endocytotic uptake of markers from pseudocoelomic fluid. [Source: WormBase] BY ORTHOLOGY TO:R13A5.1d
14.8078 -12.84 0.00412414 1300 2 2 3 [+] picture button
ENSCBRT00000004179 T07D1.3 [Source:RefSeq_peptide;Acc:NP_508445]T07D1.3 [Source:RefSeq_peptide;Acc:NP_508445] BY ORTHOLOGY TO:T07D1.3
15.0275 -16.58 0.00434814 1300 4 1 5 [+] picture button
CBG08353 ENSCBRT00000013006 Serpentine receptor class beta-7 (Protein srb-7). [Source:Uniprot/SWISSPROT;Acc:P54142]Serpentine receptor class beta-7 (Protein srb-7). [Source:Uniprot/SWISSPROT;Acc:P54142] BY ORTHOLOGY TO:F37C12.17
14.7458 -17.07 0.00437666 1300 2 1 2 [+] picture button
CBG05460 ENSCBRT00000004771 voltage-gated potassium channelvoltage-gated potassium channel BY ORTHOLOGY TO:AAEL007104-RA
15.7244 -21.16 0.00454424 1300 6 1 8 [+] picture button

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