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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-47

154 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG15267 ENSCBRT00000010445 A CB5161 ortholog of fem-2, Cs-fem-2, has been isolated from the sibling Caenorhabditis species CB5161. [Source: WormBase]A CB5161 ortholog of fem-2, Cs-fem-2, has been isolated from the sibling Caenorhabditis species CB5161. [Source: WormBase] BY ORTHOLOGY TO:T19C3.8
15.9922 -22.92 0.0000320804 1300 4 1 3 [+] picture button
CBG08854 ENSCBRT00000000531 T19H12.6 [Source:RefSeq_peptide;Acc:NP_504305]T19H12.6 [Source:RefSeq_peptide;Acc:NP_504305] BY ORTHOLOGY TO:T19H12.6
15.3046 -12.53 0.0000859538 1300 5 1 3 [+] picture button
CBG01454 ENSCBRT00000001898 smaug proteinsmaug protein BY ORTHOLOGY TO:AAEL013510-RA
15.131 -18.63 0.000109602 1300 5 2 7 [+] picture button
CBG15235 ENSCBRT00000010405 gei-16 can encode a protein with similarity to the B20 antigen of the parasitic nematode Onchocerca volvulus. GEI-16 is required for ventral enclosure and elongation during embryonic development, larval development, and normal rates of postembryonic growth. GEI-16 interacts with GEX-3, a homolog of mammalian protein ligands of the small GTPase Rac1 that is also essential for embryonic morphogenesis. [Source: WormBase]gei-16 can encode a protein with similarity to the B20 antigen of the parasitic nematode Onchocerca volvulus. GEI-16 is required for ventral enclosure and elongation during embryonic development, larval development, and normal rates of postembryonic growth. GEI-16 interacts with GEX-3, a homolog of mammalian protein ligands of the small GTPase Rac1 that is also essential for embryonic morphogenesis. [Source: WormBase] BY ORTHOLOGY TO:T17H7.4d
16.0834 -23.08 0.000461002 1300 5 1 5 [+] picture button
CBG05552 ENSCBRT00000005369 AMine oXidase family member (amx-3) [Source:RefSeq_peptide;Acc:NP_508034]AMine oXidase family member (amx-3) [Source:RefSeq_peptide;Acc:NP_508034] BY ORTHOLOGY TO:F25C8.2
16.2848 -32.36 0.000668339 1300 5 1 5 [+] picture button
CBG00282 ENSCBRT00000000292 F26A3.6 [Source:RefSeq_peptide;Acc:NP_492135]F26A3.6 [Source:RefSeq_peptide;Acc:NP_492135] BY ORTHOLOGY TO:F26A3.6
15.5366 -17.05 0.000982416 1300 6 1 7 [+] picture button
CBG15276 ENSCBRT00000010461 Y55B1AL.1 [Source:RefSeq_peptide;Acc:NP_497211]Y55B1AL.1 [Source:RefSeq_peptide;Acc:NP_497211] BY ORTHOLOGY TO:Y55B1AL.1
16.0475 -22.33 0.0012071 1300 5 1 4 [+] picture button
CBG21209 ENSCBRT00000000878 protein KINase family member (kin-21) [Source:RefSeq_peptide;Acc:NP_501758]protein KINase family member (kin-21) [Source:RefSeq_peptide;Acc:NP_501758] BY ORTHOLOGY TO:W08D2.8
15.1298 -18.53 0.00154386 1300 3 1 5 [+] picture button
CBG20829 ENSCBRT00000001312 CYtochrome P450 family member (cyp-37A1) [Source:RefSeq_peptide;Acc:NP_496939]CYtochrome P450 family member (cyp-37A1) [Source:RefSeq_peptide;Acc:NP_496939] BY ORTHOLOGY TO:F01D5.9
15.3603 -19.65 0.00216979 1300 5 1 7 [+] picture button
CBG08646 ENSCBRT00000002958 K11D12.4 [Source:RefSeq_peptide;Acc:NP_504348]K11D12.4 [Source:RefSeq_peptide;Acc:NP_504348] BY ORTHOLOGY TO:K11D12.4
15.8851 -23.28 0.00245317 1300 3 1 3 [+] picture button
CBG02638 ENSCBRT00000007507 Anillin-like protein 2. [Source:Uniprot/SWISSPROT;Acc:Q09994]Anillin-like protein 2. [Source:Uniprot/SWISSPROT;Acc:Q09994] BY ORTHOLOGY TO:K10B2.5
15.2353 -18.37 0.00267887 1300 5 1 6 [+] picture button
CBG24087 ENSCBRT00000010775 Nuclear hormone receptor family member nhr-19. [Source:Uniprot/SWISSPROT;Acc:Q09528]Nuclear hormone receptor family member nhr-19. [Source:Uniprot/SWISSPROT;Acc:Q09528] BY ORTHOLOGY TO:E02H1.7
15.1546 -20.3 0.00274184 1300 6 2 11 [+] picture button
CBG05430 ENSCBRT00000004728 The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). [Source: WormBase]The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). [Source: WormBase] BY ORTHOLOGY TO:Y73B6BR.1a
15.2927 -22.39 0.00282986 1300 3 2 3 [+] picture button
CBG02988 ENSCBRT00000006076 F38A3.1 [Source:RefSeq_peptide;Acc:NP_496361]F38A3.1 [Source:RefSeq_peptide;Acc:NP_496361] BY ORTHOLOGY TO:F38A3.1
15.3096 -23.52 0.00290774 1300 6 2 7 [+] picture button
CBG23139 ENSCBRT00000012051 The T19B10.3 gene encodes an ortholog of the human gene GALACTOSIDASE, BETA 1 (GLB1), which when mutated leads to gangliosidosis type I (OMIM:230500). [Source: WormBase]The T19B10.3 gene encodes an ortholog of the human gene GALACTOSIDASE, BETA 1 (GLB1), which when mutated leads to gangliosidosis type I (OMIM:230500). [Source: WormBase] BY ORTHOLOGY TO:T19B10.3
15.9826 -28.99 0.00300773 1300 5 2 4 [+] picture button
CBG12007 ENSCBRT00000011727 C32E8.9 [Source:RefSeq_peptide;Acc:NP_491222]C32E8.9 [Source:RefSeq_peptide;Acc:NP_491222] BY ORTHOLOGY TO:C32E8.9
15.1055 -18.79 0.00318925 1300 2 1 3 [+] picture button
CBG22950 ENSCBRT00000008776 Probable G-protein coupled receptor C06G4.5. [Source:Uniprot/SWISSPROT;Acc:P34311]Probable G-protein coupled receptor C06G4.5. [Source:Uniprot/SWISSPROT;Acc:P34311] BY ORTHOLOGY TO:C06G4.5
15.7157 -14.39 0.00384138 1300 4 1 4 [+] picture button
CBG24724 ENSCBRT00000002793 ZC443.5 [Source:RefSeq_peptide;Acc:NP_506209]ZC443.5 [Source:RefSeq_peptide;Acc:NP_506209] BY ORTHOLOGY TO:ZC443.5
14.9878 -20.4 0.00388216 1300 4 1 4 [+] picture button
CBG21206 ENSCBRT00000000880 Putative ribosomal RNA methyltransferase 2 (EC 2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase). [Source:Uniprot/SWISSPROT;Acc:Q9UI43]Putative ribosomal RNA methyltransferase 2 (EC 2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase). [Source:Uniprot/SWISSPROT;Acc:Q9UI43] BY ORTHOLOGY TO:ENSGALT00000006743
15.3117 -16.73 0.00394341 1300 8 1 9 [+] picture button
CBG08743 ENSCBRT00000005243 Enoyl-CoA Hydratase family member (ech-7) [Source:RefSeq_peptide;Acc:NP_740932]Enoyl-CoA Hydratase family member (ech-7) [Source:RefSeq_peptide;Acc:NP_740932] BY ORTHOLOGY TO:Y105E8A.4
15.9536 -23.5 0.00395361 1300 3 1 11 [+] picture button
CBG09545 ENSCBRT00000005944 CG31957-PA [Source:RefSeq_peptide;Acc:NP_722949]CG31957-PA [Source:RefSeq_peptide;Acc:NP_722949] BY ORTHOLOGY TO:CG31957-RA
15.1055 -24.75 0.00428918 1300 4 1 4 [+] picture button
CBG22656 ENSCBRT00000009854 Seven TM Receptor family member (str-231) [Source:RefSeq_peptide;Acc:NP_507017]Seven TM Receptor family member (str-231) [Source:RefSeq_peptide;Acc:NP_507017] BY ORTHOLOGY TO:C06C6.3
15.3242 -17.53 0.00441455 1300 4 1 3 [+] picture button
CBG02485 ENSCBRT00000006501 Probable rRNA-processing protein EBP2 (EBNA1-binding protein 2) (Nucleolar protein p40). [Source:Uniprot/SWISSPROT;Acc:Q99848]Probable rRNA-processing protein EBP2 (EBNA1-binding protein 2) (Nucleolar protein p40). [Source:Uniprot/SWISSPROT;Acc:Q99848] BY ORTHOLOGY TO:ENSGACT00000009038
14.9106 -23.25 0.00450029 1300 5 1 4 [+] picture button
CBG19350 ENSCBRT00000013533 tag-120 encodes a predicted transmembrane protein. as loss of tag-120 activity via RNAi does not result in any abnormalities, the precise role of TAG-120 in C. elegans development and/or behavior is not yet known. however, TAG-120 is homologous to a Drosophila NMDA receptor-associated protein and mammalian transmembrane proteins that function in Fas-mediated cell death, so TAG-120 may play a role in neuronal functions and/or apoptosis. a tag-120 reporter fusion is expressed in the nervous system, pharyngeal muscles, and to a lesser extent in the excretory system. [Source: WormBase]tag-120 encodes a predicted transmembrane protein. as loss of tag-120 activity via RNAi does not result in any abnormalities, the precise role of TAG-120 in C. elegans development and/or behavior is not yet known. however, TAG-120 is homologous to a Drosophila NMDA receptor-associated protein and mammalian transmembrane proteins that function in Fas-mediated cell death, so TAG-120 may play a role in neuronal functions and/or apoptosis. a tag-120 reporter fusion is expressed in the nervous system, pharyngeal muscles, and to a lesser extent in the excretory system. [Source: WormBase] BY ORTHOLOGY TO:F40F9.2
14.8109 -18.52 0.00453257 1300 5 2 5 [+] picture button
CBG03474 ENSCBRT00000007224 Probable cation-transporting ATPase W08D2.5 in chromosome IV (EC 3.6.3.-). [Source:Uniprot/SWISSPROT;Acc:Q27533]Probable cation-transporting ATPase W08D2.5 in chromosome IV (EC 3.6.3.-). [Source:Uniprot/SWISSPROT;Acc:Q27533] BY ORTHOLOGY TO:W08D2.5
15.1422 -16.82 0.00468372 1300 3 2 3 [+] picture button
CBG05551 ENSCBRT00000005368 F25C8.4 [Source:RefSeq_peptide;Acc:NP_508035]F25C8.4 [Source:RefSeq_peptide;Acc:NP_508035] BY ORTHOLOGY TO:F25C8.4
15.008 -22.35 0.00523706 1300 6 1 7 [+] picture button
CBG10770 ENSCBRT00000012559 F54C1.6 [Source:RefSeq_peptide;Acc:NP_491500]F54C1.6 [Source:RefSeq_peptide;Acc:NP_491500] BY ORTHOLOGY TO:F54C1.6
15.5928 -21.87 0.00541422 1300 5 1 5 [+] picture button
CBG01757 ENSCBRT00000005624 Y45F10A.3 [Source:RefSeq_peptide;Acc:NP_502605]Y45F10A.3 [Source:RefSeq_peptide;Acc:NP_502605] BY ORTHOLOGY TO:Y45F10A.3
14.9504 -14.92 0.00572665 1300 4 1 3 [+] picture button
CBG04446 ENSCBRT00000008935 K08C7.6 [Source:RefSeq_peptide;Acc:NP_501973]K08C7.6 [Source:RefSeq_peptide;Acc:NP_501973] BY ORTHOLOGY TO:K08C7.6
15.2577 -14.17 0.00616876 1300 2 1 2 [+] picture button
CBG01908 ENSCBRT00000005751 Probable glutathione S-transferase gst-36 (EC 2.5.1.18) (GST class- sigma). [Source:Uniprot/SWISSPROT;Acc:Q09607]Probable glutathione S-transferase gst-36 (EC 2.5.1.18) (GST class- sigma). [Source:Uniprot/SWISSPROT;Acc:Q09607] BY ORTHOLOGY TO:R07B1.4
14.7157 -17.22 0.00715359 1300 3 2 3 [+] picture button
CBG14847 ENSCBRT00000004550 T13C5.2 [Source:RefSeq_peptide;Acc:NP_509036]T13C5.2 [Source:RefSeq_peptide;Acc:NP_509036] BY ORTHOLOGY TO:T13C5.2
17.0011 -27.78 0.00717237 1300 1 1 2 [+] picture button
CBG22719 ENSCBRT00000004223 kqt-2 encodes a predicted M-type potassium channel for which mutations in humans are associated with heredity diseases that affect epithelial cells, cardiac muscle and neurons, and affects defecation cycle intervals in C. elegans. may function as a heterotrimeric channel with KQT-3 based on genetic evidence and is expressed in intestinal cells. [Source: WormBase]kqt-2 encodes a predicted M-type potassium channel for which mutations in humans are associated with heredity diseases that affect epithelial cells, cardiac muscle and neurons, and affects defecation cycle intervals in C. elegans. may function as a heterotrimeric channel with KQT-3 based on genetic evidence and is expressed in intestinal cells. [Source: WormBase] BY ORTHOLOGY TO:M60.5
16.9828 -29.3 0.00731884 1300 3 1 4 [+] picture button
CBG17221 ENSCBRT00000000482 EF-hand domain-containing protein 1. [Source:Uniprot/SWISSPROT;Acc:Q5JVL4]EF-hand domain-containing protein 1. [Source:Uniprot/SWISSPROT;Acc:Q5JVL4] BY ORTHOLOGY TO:ENSORLT00000016269
16.9571 -24.77 0.00752981 1300 4 1 5 [+] picture button
CBG05959 ENSCBRT00000009027 little imaginal discs CG9088-PA, isoform A [Source:RefSeq_peptide;Acc:NP_523486]little imaginal discs CG9088-PA, isoform A [Source:RefSeq_peptide;Acc:NP_523486] BY ORTHOLOGY TO:CG9088-RA
16.9217 -29.36 0.00783091 1300 2 1 3 [+] picture button
CBG06123 ENSCBRT00000008374 F12F6.1 [Source:RefSeq_peptide;Acc:NP_502182]F12F6.1 [Source:RefSeq_peptide;Acc:NP_502182] BY ORTHOLOGY TO:F12F6.1
16.2652 -29.64 0.00807148 1300 5 1 6 [+] picture button
CBG16702 ENSCBRT00000014652 F48E3.4 [Source:RefSeq_peptide;Acc:NP_509267]F48E3.4 [Source:RefSeq_peptide;Acc:NP_509267] BY ORTHOLOGY TO:F48E3.4
15.2121 -28.57 0.00820975 1300 7 1 8 [+] picture button
CBG19701 ENSCBRT00000000305 conserved hypothetical proteinconserved hypothetical protein BY ORTHOLOGY TO:AAEL003566-RA
16.7749 -22.76 0.00921251 1300 2 1 3 [+] picture button
CBG00894 ENSCBRT00000003950 R05H5.7 [Source:RefSeq_peptide;Acc:NP_496198]R05H5.7 [Source:RefSeq_peptide;Acc:NP_496198] BY ORTHOLOGY TO:R05H5.7
14.9117 -14.8 0.0093227 1300 6 2 16 [+] picture button
CBG08821 ENSCBRT00000000543 C37H5.3a [Source:RefSeq_peptide;Acc:NP_504297]C37H5.3a [Source:RefSeq_peptide;Acc:NP_504297] BY ORTHOLOGY TO:C37H5.3b
16.73 -29.58 0.00968043 1300 6 1 11 [+] picture button
CBG00910 ENSCBRT00000003939 TWiK family of potassium channels family member (twk-4) [Source:RefSeq_peptide;Acc:NP_495961]TWiK family of potassium channels family member (twk-4) [Source:RefSeq_peptide;Acc:NP_495961] BY ORTHOLOGY TO:ZK1067.5
16.7248 -26.07 0.00973656 1300 1 1 2 [+] picture button
ENSCBRT00000001731 K04C2.5 [Source:RefSeq_peptide;Acc:NP_498500]K04C2.5 [Source:RefSeq_peptide;Acc:NP_498500] BY ORTHOLOGY TO:K04C2.5
14.9446 -25.72 0.00974615 1300 5 2 6 [+] picture button
CBG18044 ENSCBRT00000003127 M88.4 [Source:RefSeq_peptide;Acc:NP_497922]M88.4 [Source:RefSeq_peptide;Acc:NP_497922] BY ORTHOLOGY TO:M88.4
16.6007 -13.29 0.0111667 1300 4 1 7 [+] picture button
CBG05397 ENSCBRT00000004623 C01B10.3 encodes a paralog of IPP-5, and thus may functionally overlap with ipp-5 in vivo. [Source: WormBase]C01B10.3 encodes a paralog of IPP-5, and thus may functionally overlap with ipp-5 in vivo. [Source: WormBase] BY ORTHOLOGY TO:C01B10.3
16.5679 -24.49 0.0115778 1300 2 1 3 [+] picture button
CBG02953 ENSCBRT00000006103 ptr-13 encodes a nematode-specific member of the sterol sensing domain (SSD) proteins, distantly paralogous to Drosophila PATCHED (PTC) and human PTCH (OMIM:601309, mutated in basal cell nevus syndrome). PTR-13 is weakly required for normal molting from L4 to adult stages. PTR-13 is also required for normal growth to full size and locomotion. [Source: WormBase]ptr-13 encodes a nematode-specific member of the sterol sensing domain (SSD) proteins, distantly paralogous to Drosophila PATCHED (PTC) and human PTCH (OMIM:601309, mutated in basal cell nevus syndrome). PTR-13 is weakly required for normal molting from L4 to adult stages. PTR-13 is also required for normal growth to full size and locomotion. [Source: WormBase] BY ORTHOLOGY TO:K07C10.1
16.4339 -24.93 0.0134191 1300 1 1 2 [+] picture button
CBG00767 ENSCBRT00000004035 B0507.1 [Source:RefSeq_peptide;Acc:NP_505262]B0507.1 [Source:RefSeq_peptide;Acc:NP_505262] BY ORTHOLOGY TO:B0507.1
16.4098 -25.22 0.0137813 1300 3 1 4 [+] picture button
ENSCBRT00000001277 M03A8.3 [Source:RefSeq_peptide;Acc:NP_509143]M03A8.3 [Source:RefSeq_peptide;Acc:NP_509143] BY ORTHOLOGY TO:M03A8.3
16.4083 -19.76 0.0138033 1300 5 1 6 [+] picture button
CBG08471 ENSCBRT00000000251 C35E7.5a [Source:RefSeq_peptide;Acc:NP_492830]C35E7.5a [Source:RefSeq_peptide;Acc:NP_492830] BY ORTHOLOGY TO:C35E7.5a
16.3724 -23.66 0.014359 1300 4 1 4 [+] picture button
CBG06200 ENSCBRT00000008289 queuine tRNA-ribosyltransferase 1 [Source:RefSeq_peptide;Acc:NP_957304]queuine tRNA-ribosyltransferase 1 [Source:RefSeq_peptide;Acc:NP_957304] BY ORTHOLOGY TO:ENSDART00000063287
16.3008 -18.45 0.0155343 1300 2 1 4 [+] picture button
CBG19659 ENSCBRT00000000083 C-type LECtin family member (clec-61) [Source:RefSeq_peptide;Acc:NP_496260]C-type LECtin family member (clec-61) [Source:RefSeq_peptide;Acc:NP_496260] BY ORTHOLOGY TO:ZK666.7
16.2703 -26.44 0.0160636 1300 4 1 5 [+] picture button
CBG11729 ENSCBRT00000004116 Y71D11A.5 [Source:RefSeq_peptide;Acc:NP_497338]Y71D11A.5 [Source:RefSeq_peptide;Acc:NP_497338] BY ORTHOLOGY TO:Y71D11A.5
16.262 -24.78 0.016211 1300 4 1 7 [+] picture button

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