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Target Listing


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Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-46

134 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG08854 ENSCBRT00000000531 T19H12.6 [Source:RefSeq_peptide;Acc:NP_504305]T19H12.6 [Source:RefSeq_peptide;Acc:NP_504305] BY ORTHOLOGY TO:T19H12.6
15.9251 -11.53 1e-06 1300 5 1 3 [+] picture button
CBG08743 ENSCBRT00000005243 Enoyl-CoA Hydratase family member (ech-7) [Source:RefSeq_peptide;Acc:NP_740932]Enoyl-CoA Hydratase family member (ech-7) [Source:RefSeq_peptide;Acc:NP_740932] BY ORTHOLOGY TO:Y105E8A.4
15.66 -23.5 0.000860014 1300 3 1 11 [+] picture button
CBG15267 ENSCBRT00000010445 A CB5161 ortholog of fem-2, Cs-fem-2, has been isolated from the sibling Caenorhabditis species CB5161. [Source: WormBase]A CB5161 ortholog of fem-2, Cs-fem-2, has been isolated from the sibling Caenorhabditis species CB5161. [Source: WormBase] BY ORTHOLOGY TO:T19C3.8
15.4956 -19.57 0.000995418 1300 4 1 3 [+] picture button
CBG12007 ENSCBRT00000011727 C32E8.9 [Source:RefSeq_peptide;Acc:NP_491222]C32E8.9 [Source:RefSeq_peptide;Acc:NP_491222] BY ORTHOLOGY TO:C32E8.9
15.6902 -23.35 0.00104361 1300 2 1 3 [+] picture button
CBG23139 ENSCBRT00000012051 The T19B10.3 gene encodes an ortholog of the human gene GALACTOSIDASE, BETA 1 (GLB1), which when mutated leads to gangliosidosis type I (OMIM:230500). [Source: WormBase]The T19B10.3 gene encodes an ortholog of the human gene GALACTOSIDASE, BETA 1 (GLB1), which when mutated leads to gangliosidosis type I (OMIM:230500). [Source: WormBase] BY ORTHOLOGY TO:T19B10.3
15.7877 -27.87 0.00122238 1300 5 2 4 [+] picture button
CBG08471 ENSCBRT00000000251 C35E7.5a [Source:RefSeq_peptide;Acc:NP_492830]C35E7.5a [Source:RefSeq_peptide;Acc:NP_492830] BY ORTHOLOGY TO:C35E7.5a
17.1521 -28.61 0.00150487 1300 4 1 4 [+] picture button
CBG15235 ENSCBRT00000010405 gei-16 can encode a protein with similarity to the B20 antigen of the parasitic nematode Onchocerca volvulus. GEI-16 is required for ventral enclosure and elongation during embryonic development, larval development, and normal rates of postembryonic growth. GEI-16 interacts with GEX-3, a homolog of mammalian protein ligands of the small GTPase Rac1 that is also essential for embryonic morphogenesis. [Source: WormBase]gei-16 can encode a protein with similarity to the B20 antigen of the parasitic nematode Onchocerca volvulus. GEI-16 is required for ventral enclosure and elongation during embryonic development, larval development, and normal rates of postembryonic growth. GEI-16 interacts with GEX-3, a homolog of mammalian protein ligands of the small GTPase Rac1 that is also essential for embryonic morphogenesis. [Source: WormBase] BY ORTHOLOGY TO:T17H7.4d
15.5931 -19.73 0.00151177 1300 5 1 5 [+] picture button
CBG16702 ENSCBRT00000014652 F48E3.4 [Source:RefSeq_peptide;Acc:NP_509267]F48E3.4 [Source:RefSeq_peptide;Acc:NP_509267] BY ORTHOLOGY TO:F48E3.4
15.3096 -19.67 0.00181538 1300 7 1 8 [+] picture button
CBG05552 ENSCBRT00000005369 AMine oXidase family member (amx-3) [Source:RefSeq_peptide;Acc:NP_508034]AMine oXidase family member (amx-3) [Source:RefSeq_peptide;Acc:NP_508034] BY ORTHOLOGY TO:F25C8.2
15.9922 -32.48 0.00182981 1300 5 1 5 [+] picture button
CBG20829 ENSCBRT00000001312 CYtochrome P450 family member (cyp-37A1) [Source:RefSeq_peptide;Acc:NP_496939]CYtochrome P450 family member (cyp-37A1) [Source:RefSeq_peptide;Acc:NP_496939] BY ORTHOLOGY TO:F01D5.9
15.1646 -18.08 0.00246774 1300 5 1 7 [+] picture button
CBG08646 ENSCBRT00000002958 K11D12.4 [Source:RefSeq_peptide;Acc:NP_504348]K11D12.4 [Source:RefSeq_peptide;Acc:NP_504348] BY ORTHOLOGY TO:K11D12.4
16.08 -24.18 0.00278865 1300 3 1 3 [+] picture button
CBG02988 ENSCBRT00000006076 F38A3.1 [Source:RefSeq_peptide;Acc:NP_496361]F38A3.1 [Source:RefSeq_peptide;Acc:NP_496361] BY ORTHOLOGY TO:F38A3.1
15.3096 -21.78 0.00303089 1300 6 2 7 [+] picture button
CBG00282 ENSCBRT00000000292 F26A3.6 [Source:RefSeq_peptide;Acc:NP_492135]F26A3.6 [Source:RefSeq_peptide;Acc:NP_492135] BY ORTHOLOGY TO:F26A3.6
15.0481 -15.49 0.00314684 1300 6 1 7 [+] picture button
ENSCBRT00000008005 Y71H2AM.12 [Source:RefSeq_peptide;Acc:NP_497608]Y71H2AM.12 [Source:RefSeq_peptide;Acc:NP_497608] BY ORTHOLOGY TO:Y71H2AM.12
15.9922 -21.69 0.00335337 1300 4 1 3 [+] picture button
CBG19302 ENSCBRT00000013500 mdf-1 encodes a coiled-coil domain-containing protein that is orthologous to the Saccharomyces cerevisiae mitotic spindle checkpoint protein Mad1p. consistent with a role as a checkpoint protein, MDF-1 is required in C. elegans for mitotic genome stability and hence, long-term survival and fertility. in vitro, MDF-1 interacts with MDF-2, the C. elegans Mad2p ortholog. [Source: WormBase]mdf-1 encodes a coiled-coil domain-containing protein that is orthologous to the Saccharomyces cerevisiae mitotic spindle checkpoint protein Mad1p. consistent with a role as a checkpoint protein, MDF-1 is required in C. elegans for mitotic genome stability and hence, long-term survival and fertility. in vitro, MDF-1 interacts with MDF-2, the C. elegans Mad2p ortholog. [Source: WormBase] BY ORTHOLOGY TO:C50F4.11
16.4699 -26.2 0.00341598 1300 5 1 6 [+] picture button
CBG21206 ENSCBRT00000000880 Putative ribosomal RNA methyltransferase 2 (EC 2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase). [Source:Uniprot/SWISSPROT;Acc:Q9UI43]Putative ribosomal RNA methyltransferase 2 (EC 2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase). [Source:Uniprot/SWISSPROT;Acc:Q9UI43] BY ORTHOLOGY TO:ENSGALT00000006743
15.941 -14.77 0.00360342 1300 8 1 9 [+] picture button
CBG15276 ENSCBRT00000010461 Y55B1AL.1 [Source:RefSeq_peptide;Acc:NP_497211]Y55B1AL.1 [Source:RefSeq_peptide;Acc:NP_497211] BY ORTHOLOGY TO:Y55B1AL.1
15.546 -18.98 0.00394397 1300 5 1 4 [+] picture button
CBG08821 ENSCBRT00000000543 C37H5.3a [Source:RefSeq_peptide;Acc:NP_504297]C37H5.3a [Source:RefSeq_peptide;Acc:NP_504297] BY ORTHOLOGY TO:C37H5.3b
17.5127 -29.79 0.00434964 1300 6 1 11 [+] picture button
CBG08053 ENSCBRT00000003457 Putative neuropeptide Y receptor (NPY-R). [Source:Uniprot/SWISSPROT;Acc:Q18179]Putative neuropeptide Y receptor (NPY-R). [Source:Uniprot/SWISSPROT;Acc:Q18179] BY ORTHOLOGY TO:C25G6.5
15.008 -15.21 0.0044443 1300 8 1 8 [+] picture button
CBG19030 ENSCBRT00000014073 T15B7.15 [Source:RefSeq_peptide;Acc:NP_504739]T15B7.15 [Source:RefSeq_peptide;Acc:NP_504739] BY ORTHOLOGY TO:T15B7.15
15.1055 -20.33 0.00562429 1300 4 2 4 [+] picture button
CBG18181 ENSCBRT00000003424 KNL (kinetochore null) Binding Protein family member (kbp-2) [Source:RefSeq_peptide;Acc:NP_741121]KNL (kinetochore null) Binding Protein family member (kbp-2) [Source:RefSeq_peptide;Acc:NP_741121] BY ORTHOLOGY TO:F26F4.13
15.4157 -19.01 0.00583132 1300 3 1 4 [+] picture button
CBG02953 ENSCBRT00000006103 ptr-13 encodes a nematode-specific member of the sterol sensing domain (SSD) proteins, distantly paralogous to Drosophila PATCHED (PTC) and human PTCH (OMIM:601309, mutated in basal cell nevus syndrome). PTR-13 is weakly required for normal molting from L4 to adult stages. PTR-13 is also required for normal growth to full size and locomotion. [Source: WormBase]ptr-13 encodes a nematode-specific member of the sterol sensing domain (SSD) proteins, distantly paralogous to Drosophila PATCHED (PTC) and human PTCH (OMIM:601309, mutated in basal cell nevus syndrome). PTR-13 is weakly required for normal molting from L4 to adult stages. PTR-13 is also required for normal growth to full size and locomotion. [Source: WormBase] BY ORTHOLOGY TO:K07C10.1
17.2165 -27 0.00604321 1300 1 1 2 [+] picture button
CBG00910 ENSCBRT00000003939 TWiK family of potassium channels family member (twk-4) [Source:RefSeq_peptide;Acc:NP_495961]TWiK family of potassium channels family member (twk-4) [Source:RefSeq_peptide;Acc:NP_495961] BY ORTHOLOGY TO:ZK1067.5
17.2138 -28.52 0.00606127 1300 1 1 2 [+] picture button
ENSCBRT00000001277 M03A8.3 [Source:RefSeq_peptide;Acc:NP_509143]M03A8.3 [Source:RefSeq_peptide;Acc:NP_509143] BY ORTHOLOGY TO:M03A8.3
17.1943 -22.7 0.00619384 1300 5 1 6 [+] picture button
CBG18398 ENSCBRT00000001710 C38H2.2 encodes a core 1 UDP-Gal:GalNAcalpha1-Ser/Thr beta1,3-galactosyltransferase (core 1 beta3-Gal-T or T-synthase, EC2.4.1.122). C38H2.2 protein is predicted to be primarily extracellular, with an N-terminal transmembrane domain. C38H2.2 shares 6 conserved cysteine residues with all known T-synthases, and is ubiquitously expressed. enzymatically active C38H2.2 can be generated from insect but not mammalian cells, suggesting that invertebrate-specific chaperones are required for its activity. [Source: WormBase]C38H2.2 encodes a core 1 UDP-Gal:GalNAcalpha1-Ser/Thr beta1,3-galactosyltransferase (core 1 beta3-Gal-T or T-synthase, EC2.4.1.122). C38H2.2 protein is predicted to be primarily extracellular, with an N-terminal transmembrane domain. C38H2.2 shares 6 conserved cysteine residues with all known T-synthases, and is ubiquitously expressed. enzymatically active C38H2.2 can be generated from insect but not mammalian cells, suggesting that invertebrate-specific chaperones are required for its activity. [Source: WormBase] BY ORTHOLOGY TO:C38H2.2
14.9114 -14.62 0.0067152 1300 6 2 7 [+] picture button
CBG06123 ENSCBRT00000008374 F12F6.1 [Source:RefSeq_peptide;Acc:NP_502182]F12F6.1 [Source:RefSeq_peptide;Acc:NP_502182] BY ORTHOLOGY TO:F12F6.1
17.0491 -27.83 0.00727547 1300 5 1 6 [+] picture button
CBG02015 ENSCBRT00000005878 Y41G9A.3 [Source:RefSeq_peptide;Acc:NP_508509]Y41G9A.3 [Source:RefSeq_peptide;Acc:NP_508509] BY ORTHOLOGY TO:Y41G9A.3
16.9984 -32.69 0.00769552 1300 6 1 6 [+] picture button
CBG17221 ENSCBRT00000000482 EF-hand domain-containing protein 1. [Source:Uniprot/SWISSPROT;Acc:Q5JVL4]EF-hand domain-containing protein 1. [Source:Uniprot/SWISSPROT;Acc:Q5JVL4] BY ORTHOLOGY TO:ENSORLT00000016269
16.9571 -24.45 0.00805545 1300 4 1 5 [+] picture button
CBG04128 ENSCBRT00000010048 crs-1 encodes a predicted cytoplasmic cysteinyl-tRNA synthetase (CysRS), a class I aminoacyl-tRNA synthetase that catalyzes the attachment of cysteine to its cognate tRNA and is thus required for protein biosynthesis. CRS-1 is essential for embryonic and larval development, and is required for molting and a normal rate of postembryonic development. [Source: WormBase]crs-1 encodes a predicted cytoplasmic cysteinyl-tRNA synthetase (CysRS), a class I aminoacyl-tRNA synthetase that catalyzes the attachment of cysteine to its cognate tRNA and is thus required for protein biosynthesis. CRS-1 is essential for embryonic and larval development, and is required for molting and a normal rate of postembryonic development. [Source: WormBase] BY ORTHOLOGY TO:Y23H5A.7b
16.9418 -19.2 0.00819359 1300 10 1 14 [+] picture button
CBG19063 ENSCBRT00000013973 C33G8.4 [Source:RefSeq_peptide;Acc:NP_504773]C33G8.4 [Source:RefSeq_peptide;Acc:NP_504773] BY ORTHOLOGY TO:C33G8.4
16.8917 -24.83 0.0086609 1300 3 1 6 [+] picture button
CBG08103 ENSCBRT00000003638 ImmunoGlobulin-like Cell adhesion Molecule family member (igcm-1) [Source:RefSeq_peptide;Acc:NP_508166]ImmunoGlobulin-like Cell adhesion Molecule family member (igcm-1) [Source:RefSeq_peptide;Acc:NP_508166] BY ORTHOLOGY TO:F39H12.4
16.8677 -22.95 0.00889297 1300 6 2 11 [+] picture button
CBG05551 ENSCBRT00000005368 F25C8.4 [Source:RefSeq_peptide;Acc:NP_508035]F25C8.4 [Source:RefSeq_peptide;Acc:NP_508035] BY ORTHOLOGY TO:F25C8.4
14.7157 -18.98 0.00929282 1300 6 1 7 [+] picture button
ENSCBRT00000013696 T04B2.7 [Source:RefSeq_peptide;Acc:NP_872109]T04B2.7 [Source:RefSeq_peptide;Acc:NP_872109] BY ORTHOLOGY TO:T04B2.7
16.8221 -22.07 0.00935289 1300 2 1 3 [+] picture button
CBG16689 ENSCBRT00000014643 C10A4.8 [Source:RefSeq_peptide;Acc:NP_509256]C10A4.8 [Source:RefSeq_peptide;Acc:NP_509256] BY ORTHOLOGY TO:C10A4.8
16.7902 -33.32 0.00968943 1300 3 1 4 [+] picture button
CBG01454 ENSCBRT00000001898 smaug proteinsmaug protein BY ORTHOLOGY TO:AAEL013510-RA
15.131 -19.67 0.01028 1300 5 2 7 [+] picture button
CBG02364 ENSCBRT00000006659 GUstatory Receptor family member (gur-5) [Source:RefSeq_peptide;Acc:NP_494992]GUstatory Receptor family member (gur-5) [Source:RefSeq_peptide;Acc:NP_494992] BY ORTHOLOGY TO:ZK622.2
16.6761 -25.64 0.0109906 1300 2 1 4 [+] picture button
CBG04332 ENSCBRT00000007700 F02E11.1 [Source:RefSeq_peptide;Acc:NP_494495]F02E11.1 [Source:RefSeq_peptide;Acc:NP_494495] BY ORTHOLOGY TO:F02E11.1
16.624 -22.01 0.01164 1300 6 1 8 [+] picture button
CBG10102 ENSCBRT00000007222 tkr-1 encodes a G protein-coupled receptor that is the C. elegans tachykinin-like neuropeptide receptor homolog. by homology, TKR-1 is predicted to function in modulation of excitatory neurotransmission. as loss of tkr-1 activity via RNAi results in moderate reduction of fat content, TKR-1 may play a specific role in regulating lipid metabolism. a tkr-1 reporter gene fusion is reportedly expressed in the socket cells of the deirid and post-deirid sensilla from the L2 larval stage through adulthood. [Source: WormBase]tkr-1 encodes a G protein-coupled receptor that is the C. elegans tachykinin-like neuropeptide receptor homolog. by homology, TKR-1 is predicted to function in modulation of excitatory neurotransmission. as loss of tkr-1 activity via RNAi results in moderate reduction of fat content, TKR-1 may play a specific role in regulating lipid metabolism. a tkr-1 reporter gene fusion is reportedly expressed in the socket cells of the deirid and post-deirid sensilla from the L2 larval stage through adulthood. [Source: WormBase] BY ORTHOLOGY TO:C38C10.1
14.7157 -15.66 0.0117999 1300 4 2 4 [+] picture button
CBG22719 ENSCBRT00000004223 kqt-2 encodes a predicted M-type potassium channel for which mutations in humans are associated with heredity diseases that affect epithelial cells, cardiac muscle and neurons, and affects defecation cycle intervals in C. elegans. may function as a heterotrimeric channel with KQT-3 based on genetic evidence and is expressed in intestinal cells. [Source: WormBase]kqt-2 encodes a predicted M-type potassium channel for which mutations in humans are associated with heredity diseases that affect epithelial cells, cardiac muscle and neurons, and affects defecation cycle intervals in C. elegans. may function as a heterotrimeric channel with KQT-3 based on genetic evidence and is expressed in intestinal cells. [Source: WormBase] BY ORTHOLOGY TO:M60.5
16.4948 -25.1 0.0134215 1300 3 1 4 [+] picture button
CBG08106 ENSCBRT00000003643 F39H12.1 [Source:RefSeq_peptide;Acc:NP_508164]F39H12.1 [Source:RefSeq_peptide;Acc:NP_508164] BY ORTHOLOGY TO:F39H12.1
16.486 -34.3 0.0135518 1300 2 1 10 [+] picture button
CBG05397 ENSCBRT00000004623 C01B10.3 encodes a paralog of IPP-5, and thus may functionally overlap with ipp-5 in vivo. [Source: WormBase]C01B10.3 encodes a paralog of IPP-5, and thus may functionally overlap with ipp-5 in vivo. [Source: WormBase] BY ORTHOLOGY TO:C01B10.3
16.4675 -24.94 0.013831 1300 2 1 3 [+] picture button
CBG05555 ENSCBRT00000005373 CDNA FLJ14677 fis, clone NT2RP2004095. [Source:Uniprot/SPTREMBL;Acc:Q96SS0]CDNA FLJ14677 fis, clone NT2RP2004095. [Source:Uniprot/SPTREMBL;Acc:Q96SS0] BY ORTHOLOGY TO:ENSDART00000087841
16.4586 -23.16 0.0139665 1300 3 1 5 [+] picture button
CBG05959 ENSCBRT00000009027 little imaginal discs CG9088-PA, isoform A [Source:RefSeq_peptide;Acc:NP_523486]little imaginal discs CG9088-PA, isoform A [Source:RefSeq_peptide;Acc:NP_523486] BY ORTHOLOGY TO:CG9088-RA
16.4327 -25.16 0.0143711 1300 2 1 3 [+] picture button
CBG01830 ENSCBRT00000002906 C39E9.9 [Source:RefSeq_peptide;Acc:NP_502514]C39E9.9 [Source:RefSeq_peptide;Acc:NP_502514] BY ORTHOLOGY TO:C39E9.9
16.3823 -23.23 0.0151898 1300 4 1 5 [+] picture button
CBG17688 ENSCBRT00000002267 conserved hypothetical proteinconserved hypothetical protein BY ORTHOLOGY TO:AAEL005846-RA
16.3447 -25.5 0.0158299 1300 5 2 9 [+] picture button
CBG04584 ENSCBRT00000010479 C53A5.5 [Source:RefSeq_peptide;Acc:NP_506601]C53A5.5 [Source:RefSeq_peptide;Acc:NP_506601] BY ORTHOLOGY TO:C53A5.5
16.3078 -14.99 0.0164846 1300 4 1 5 [+] picture button
CBG08134 ENSCBRT00000003717 T19D7.2 [Source:RefSeq_peptide;Acc:NP_508135]T19D7.2 [Source:RefSeq_peptide;Acc:NP_508135] BY ORTHOLOGY TO:T19D7.2
16.275 -22.34 0.017089 1300 5 1 7 [+] picture button
CBG16918 ENSCBRT00000011703 F11C1.1 [Source:RefSeq_peptide;Acc:NP_510159]F11C1.1 [Source:RefSeq_peptide;Acc:NP_510159] BY ORTHOLOGY TO:F11C1.1
16.275 -26.33 0.017089 1300 6 1 8 [+] picture button
CBG14847 ENSCBRT00000004550 T13C5.2 [Source:RefSeq_peptide;Acc:NP_509036]T13C5.2 [Source:RefSeq_peptide;Acc:NP_509036] BY ORTHOLOGY TO:T13C5.2
16.2194 -25.22 0.0181621 1300 1 1 2 [+] picture button
CBG18013 ENSCBRT00000003049 Amidophosphoribosyltransferase precursor (EC 2.4.2.14) (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPAT). [Source:Uniprot/SWISSPROT;Acc:P28173]Amidophosphoribosyltransferase precursor (EC 2.4.2.14) (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPAT). [Source:Uniprot/SWISSPROT;Acc:P28173] BY ORTHOLOGY TO:ENSGALT00000022312
16.1775 -31.53 0.0190147 1300 1 1 2 [+] picture button

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