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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-43

205 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG20129 ENSCBRT00000000715 Probable transcription initiation factor IIA gamma chain (TFIIA P12 subunit) (TFIIA-12) (TFIIAS) (TFIIA-gamma). [Source:Uniprot/SWISSPROT;Acc:Q9NEX2]Probable transcription initiation factor IIA gamma chain (TFIIA P12 subunit) (TFIIA-12) (TFIIAS) (TFIIA-gamma). [Source:Uniprot/SWISSPROT;Acc:Q9NEX2] BY ORTHOLOGY TO:Y111B2A.13
15.8303 -17.13 0.00000612838 1300 5 2 7 [+] picture button
CBG20699 ENSCBRT00000001494 Nuclear Hormone Receptor family member (nhr-70) [Source:RefSeq_peptide;Acc:NP_507636]Nuclear Hormone Receptor family member (nhr-70) [Source:RefSeq_peptide;Acc:NP_507636] BY ORTHOLOGY TO:Y51A2D.17
18.1674 -14.86 0.0000489723 1300 6 1 6 [+] picture button
CBG18476 ENSCBRT00000000941 T01B11.1 [Source:RefSeq_peptide;Acc:NP_501437]T01B11.1 [Source:RefSeq_peptide;Acc:NP_501437] BY ORTHOLOGY TO:T01B11.1
17.5234 -23.61 0.0000555436 1300 4 2 5 [+] picture button
CBG02748 ENSCBRT00000007338 ZK930.2 [Source:RefSeq_peptide;Acc:NP_496539]ZK930.2 [Source:RefSeq_peptide;Acc:NP_496539] BY ORTHOLOGY TO:ZK930.2
21.3476 -42.16 0.00015032 1300 10 1 17 [+] picture button
CBG01543 ENSCBRT00000005670 zinc finger, FYVE domain containing 20 [Source:MarkerSymbol;Acc:MGI:1925537]zinc finger, FYVE domain containing 20 [Source:MarkerSymbol;Acc:MGI:1925537] BY ORTHOLOGY TO:ENSMUST00000014694
17.0456 -17.67 0.000173303 1300 4 1 5 [+] picture button
CBG12362 ENSCBRT00000013107 Mitochondrial import inner membrane translocase subunit Tim13. [Source:Uniprot/SWISSPROT;Acc:Q6DGJ3]Mitochondrial import inner membrane translocase subunit Tim13. [Source:Uniprot/SWISSPROT;Acc:Q6DGJ3] BY ORTHOLOGY TO:ENSDART00000081156
16.4959 -21.48 0.000711413 1300 4 1 4 [+] picture button
CBG04201 ENSCBRT00000007598 arx-7 encodes the C. elegans ortholog of the p16Arc subunit of the actin-related protein (Arp)2/3 complex. [Source: WormBase]arx-7 encodes the C. elegans ortholog of the p16Arc subunit of the actin-related protein (Arp)2/3 complex. [Source: WormBase] BY ORTHOLOGY TO:M01B12.3
16.3882 -15.01 0.000846854 1300 3 2 8 [+] picture button
CBG16044 ENSCBRT00000014266 F15G9.5 [Source:RefSeq_peptide;Acc:NP_509637]F15G9.5 [Source:RefSeq_peptide;Acc:NP_509637] BY ORTHOLOGY TO:F15G9.5
16.3376 -17.04 0.000899476 1300 3 2 5 [+] picture button
CBG03790 ENSCBRT00000008644 F10G8.8 [Source:RefSeq_peptide;Acc:NP_492655]F10G8.8 [Source:RefSeq_peptide;Acc:NP_492655] BY ORTHOLOGY TO:F10G8.8
16.4331 -12.29 0.00097065 1300 5 2 7 [+] picture button
CBG02476 ENSCBRT00000006508 FMRF-Like Peptide family member (flp-27) [Source:RefSeq_peptide;Acc:NP_495111]FMRF-Like Peptide family member (flp-27) [Source:RefSeq_peptide;Acc:NP_495111] BY ORTHOLOGY TO:C25H3.5
15.3406 -14.51 0.00105497 1300 4 2 5 [+] picture button
CBG07670 ENSCBRT00000010646 Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide (EC 2.7.1.154) (Phosphoinositide 3-Kinase-C2-alpha) (PtdIns-3-kinase C2 alpha) (PI3K-C2alpha). [Source:Uniprot/SWISSPROT;Acc:O00443]Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide (EC 2.7.1.154) (Phosphoinositide 3-Kinase-C2-alpha) (PtdIns-3-kinase C2 alpha) (PI3K-C2alpha). [Source:Uniprot/SWISSPROT;Acc:O00443] BY ORTHOLOGY TO:ENST00000265970
16.0801 -21.03 0.00147346 1300 2 1 5 [+] picture button
CBG15930 ENSCBRT00000014268 F11C7.1 [Source:RefSeq_peptide;Acc:NP_510824]F11C7.1 [Source:RefSeq_peptide;Acc:NP_510824] BY ORTHOLOGY TO:F11C7.1
15.8221 -19.82 0.00151511 1300 5 1 4 [+] picture button
CBG15435 ENSCBRT00000010757 Probable G-protein coupled receptor K01A12.3. [Source:Uniprot/SWISSPROT;Acc:Q10042]Probable G-protein coupled receptor K01A12.3. [Source:Uniprot/SWISSPROT;Acc:Q10042] BY ORTHOLOGY TO:K01A12.3
16.2145 -19.54 0.00159794 1300 5 2 9 [+] picture button
CBG17313 ENSCBRT00000001276 CDNA FLJ43363 fis, clone NT2RP7017474. [Source:Uniprot/SPTREMBL;Acc:Q6ZUS6]CDNA FLJ43363 fis, clone NT2RP7017474. [Source:Uniprot/SPTREMBL;Acc:Q6ZUS6] BY ORTHOLOGY TO:ENSOANT00000010670
15.5646 -13.41 0.00171109 1300 5 2 5 [+] picture button
CBG06926 ENSCBRT00000007381 solute carrier family 35 (CMP-sialic acid transporter), member A1 [Source:RefSeq_peptide;Acc:NP_989844]solute carrier family 35 (CMP-sialic acid transporter), member A1 [Source:RefSeq_peptide;Acc:NP_989844] BY ORTHOLOGY TO:ENSGALT00000025488
15.7517 -15.48 0.00173348 1300 5 1 4 [+] picture button
CBG01690 ENSCBRT00000005572 R08C7.2a [Source:RefSeq_peptide;Acc:NP_001023332]R08C7.2a [Source:RefSeq_peptide;Acc:NP_001023332] BY ORTHOLOGY TO:R08C7.2a
15.3418 -14.91 0.00178976 1300 2 1 1 [+] picture button
ENSCBRT00000008710 WD repeat protein 71 (Protein G-16). [Source:Uniprot/SWISSPROT;Acc:Q9BRP4]WD repeat protein 71 (Protein G-16). [Source:Uniprot/SWISSPROT;Acc:Q9BRP4] BY ORTHOLOGY TO:ENSOANT00000021923
15.9137 -19.28 0.00246382 1300 1 2 3 [+] picture button
CBG19224 ENSCBRT00000013431 Seven TM Receptor family member (str-177) [Source:RefSeq_peptide;Acc:NP_505383]Seven TM Receptor family member (str-177) [Source:RefSeq_peptide;Acc:NP_505383] BY ORTHOLOGY TO:T18H9.4
15.6226 -14.73 0.00248232 1300 1 1 1 [+] picture button
CBG03217 ENSCBRT00000006840 T21B10.4 [Source:RefSeq_peptide;Acc:NP_495903]T21B10.4 [Source:RefSeq_peptide;Acc:NP_495903] BY ORTHOLOGY TO:T21B10.4
15.324 -16.43 0.00272113 1300 3 1 2 [+] picture button
CBG18029 ENSCBRT00000003078 Protein neurobeachin (Protein rugose) (A-kinase anchor protein 550) (AKAP 550) (dAKAP550). [Source:Uniprot/SWISSPROT;Acc:Q9W4E2]Protein neurobeachin (Protein rugose) (A-kinase anchor protein 550) (AKAP 550) (dAKAP550). [Source:Uniprot/SWISSPROT;Acc:Q9W4E2] BY ORTHOLOGY TO:CG6775-RA
16.5207 -19.18 0.00281017 1300 4 1 4 [+] picture button
CBG07590 ENSCBRT00000011131 transcription factor coe3transcription factor coe3 BY ORTHOLOGY TO:AAEL003436-RA
15.8491 -14.08 0.00286153 1300 2 2 2 [+] picture button
CBG04077 ENSCBRT00000009861 SAC domain-containing protein 3. [Source:Uniprot/SWISSPROT;Acc:Q92562]SAC domain-containing protein 3. [Source:Uniprot/SWISSPROT;Acc:Q92562] BY ORTHOLOGY TO:SINFRUT00000168523
15.9137 -16.45 0.00288788 1300 3 2 3 [+] picture button
CBG05907 ENSCBRT00000008993 F49E8.2 [Source:RefSeq_peptide;Acc:NP_501222]F49E8.2 [Source:RefSeq_peptide;Acc:NP_501222] BY ORTHOLOGY TO:F49E8.2
16.0227 -20.76 0.0031566 1300 4 1 5 [+] picture button
CBG08692 ENSCBRT00000002921 Serpentine Receptor, class T family member (srt-64) [Source:RefSeq_peptide;Acc:NP_504386]Serpentine Receptor, class T family member (srt-64) [Source:RefSeq_peptide;Acc:NP_504386] BY ORTHOLOGY TO:C03A7.9
15.1465 -17.03 0.00317034 1300 5 1 4 [+] picture button
CBG22269 ENSCBRT00000003620 D1007.16 [Source:RefSeq_peptide;Acc:NP_491404]D1007.16 [Source:RefSeq_peptide;Acc:NP_491404] BY ORTHOLOGY TO:D1007.16
15.7069 -26.55 0.00332426 1300 3 1 2 [+] picture button
CBG14317 ENSCBRT00000002753 C16B8.2 [Source:RefSeq_peptide;Acc:NP_508685]C16B8.2 [Source:RefSeq_peptide;Acc:NP_508685] BY ORTHOLOGY TO:C16B8.2
15.5255 -22.04 0.00344076 1300 5 2 5 [+] picture button
CBG20553 ENSCBRT00000000049 F40A3.2 [Source:RefSeq_peptide;Acc:NP_505031]F40A3.2 [Source:RefSeq_peptide;Acc:NP_505031] BY ORTHOLOGY TO:F40A3.2
15.4285 -15.51 0.00361093 1300 2 1 2 [+] picture button
CBG06153 ENSCBRT00000008344 C10C6.2 encodes a G-protein-coupled receptor for the FMRFamide-related peptides (FaRPs) encoded by flp-15. C10C6.2 is primarily coupled to Gi/Go proteins, since C10C6.2 signalling is blocked by pertussis toxin. because of its link to Gi/Go proteins, C10C6.2 is expected to be inhibitory [Source: WormBase]C10C6.2 encodes a G-protein-coupled receptor for the FMRFamide-related peptides (FaRPs) encoded by flp-15. C10C6.2 is primarily coupled to Gi/Go proteins, since C10C6.2 signalling is blocked by pertussis toxin. because of its link to Gi/Go proteins, C10C6.2 is expected to be inhibitory [Source: WormBase] BY ORTHOLOGY TO:C10C6.2
15.4447 -18.7 0.00364762 1300 4 2 5 [+] picture button
CBG23272 ENSCBRT00000012297 Syntaxin-5. [Source:Uniprot/SWISSPROT;Acc:Q13190]Syntaxin-5. [Source:Uniprot/SWISSPROT;Acc:Q13190] BY ORTHOLOGY TO:ENSOANT00000020038
15.4814 -18.31 0.00371419 1300 3 1 3 [+] picture button
CBG07388 ENSCBRT00000011827 adm-2 encodes a protein containing a snake venom disintegrin-domain and a metalloprotease-like domain (i.e., a protein of the ADAM family). like ADM-1, ADM-2 is homologous to a mammalian sperm glycoprotein (PH-30/fertilin) implicated in sperm-egg fusion, and ADM-2 might thus be a fusogenic protein mediating the merging of plasma membranes during development. [Source: WormBase]adm-2 encodes a protein containing a snake venom disintegrin-domain and a metalloprotease-like domain (i.e., a protein of the ADAM family). like ADM-1, ADM-2 is homologous to a mammalian sperm glycoprotein (PH-30/fertilin) implicated in sperm-egg fusion, and ADM-2 might thus be a fusogenic protein mediating the merging of plasma membranes during development. [Source: WormBase] BY ORTHOLOGY TO:C04A11.4
15.3418 -14.88 0.00380425 1300 2 1 2 [+] picture button
CBG04164 ENSCBRT00000007635 aat-5 encodes a predicted amino acid transporter catalytic subunit. unlike catalytic subunits in other organisms, however, AAT-5 does not contain the highly conserved cysteine residue known to facilitate covalent interaction with a glycoprotein subunit, suggesting that AAT-5 does not require this residue for heterodimer formation or alternatively, does not require the glycoprotein subunit for function. [Source: WormBase]aat-5 encodes a predicted amino acid transporter catalytic subunit. unlike catalytic subunits in other organisms, however, AAT-5 does not contain the highly conserved cysteine residue known to facilitate covalent interaction with a glycoprotein subunit, suggesting that AAT-5 does not require this residue for heterodimer formation or alternatively, does not require the glycoprotein subunit for function. [Source: WormBase] BY ORTHOLOGY TO:C55C2.5a
15.1374 -22.33 0.00387797 1300 4 2 5 [+] picture button
CBG11695 ENSCBRT00000004135 Putative phosphatidylcholine:ceramide cholinephosphotransferase 3 (EC 2.7.8.27) (Sphingomyelin synthase 3). [Source:Uniprot/SWISSPROT;Acc:Q965Q4]Putative phosphatidylcholine:ceramide cholinephosphotransferase 3 (EC 2.7.8.27) (Sphingomyelin synthase 3). [Source:Uniprot/SWISSPROT;Acc:Q965Q4] BY ORTHOLOGY TO:Y22D7AL.8
15.4094 -18.16 0.00394459 1300 2 2 5 [+] picture button
CBG00593 ENSCBRT00000003326 Putative protein tag-256. [Source:Uniprot/SWISSPROT;Acc:P30639]Putative protein tag-256. [Source:Uniprot/SWISSPROT;Acc:P30639] BY ORTHOLOGY TO:ZK637.3
15.4057 -13.09 0.00394662 1300 4 1 6 [+] picture button
CBG20336 ENSCBRT00000003697 R05D7.5 [Source:RefSeq_peptide;Acc:NP_493078]R05D7.5 [Source:RefSeq_peptide;Acc:NP_493078] BY ORTHOLOGY TO:R05D7.5
15.1312 -11.16 0.00395755 1300 8 2 12 [+] picture button
CBG05348 ENSCBRT00000002819 F30B5.7 [Source:RefSeq_peptide;Acc:NP_500517]F30B5.7 [Source:RefSeq_peptide;Acc:NP_500517] BY ORTHOLOGY TO:F30B5.7
15.415 -13.14 0.00411187 1300 5 1 3 [+] picture button
CBG09482 ENSCBRT00000005997 far-5 encodes a member of a class of fatty acid-and retinol-binding proteins that are known to be secreted by parasitic nematodes and plants. far-5 binds lipid in fluorescence-based assays, however, the precise function of far-5 is not known. [Source: WormBase]far-5 encodes a member of a class of fatty acid-and retinol-binding proteins that are known to be secreted by parasitic nematodes and plants. far-5 binds lipid in fluorescence-based assays, however, the precise function of far-5 is not known. [Source: WormBase] BY ORTHOLOGY TO:F15B9.3
15.3418 -17.19 0.00426281 1300 2 2 3 [+] picture button
CBG19338 ENSCBRT00000013526 ZK287.3 [Source:RefSeq_peptide;Acc:NP_505494]ZK287.3 [Source:RefSeq_peptide;Acc:NP_505494] BY ORTHOLOGY TO:ZK287.3
15.664 -18.58 0.00432116 1300 8 1 7 [+] picture button
CBG08606 ENSCBRT00000002983 Nuclear hormone receptor family member nhr-12. [Source:Uniprot/SWISSPROT;Acc:Q21701]Nuclear hormone receptor family member nhr-12. [Source:Uniprot/SWISSPROT;Acc:Q21701] BY ORTHOLOGY TO:R04B5.4
15.3315 -15.64 0.00434778 1300 6 1 7 [+] picture button
CBG00761 ENSCBRT00000004037 Temporarily Assigned Gene name family member (tag-117) [Source:RefSeq_peptide;Acc:NP_505265]Temporarily Assigned Gene name family member (tag-117) [Source:RefSeq_peptide;Acc:NP_505265] BY ORTHOLOGY TO:C01B7.4
15.4106 -15.21 0.00438131 1300 1 2 2 [+] picture button
CBG20911 ENSCBRT00000000647 conserved hypothetical proteinconserved hypothetical protein BY ORTHOLOGY TO:AAEL013108-RA
15.2435 -16.06 0.00457806 1300 3 1 3 [+] picture button
CBG20603 ENSCBRT00000001406 TBC domain-containing protein kinase-like protein. [Source:Uniprot/SWISSPROT;Acc:Q5F361]TBC domain-containing protein kinase-like protein. [Source:Uniprot/SWISSPROT;Acc:Q5F361] BY ORTHOLOGY TO:ENSGALT00000017190
16.3514 -16.7 0.00462867 1300 4 1 4 [+] picture button
CBG10379 ENSCBRT00000007873 Serpentine Receptor, class T family member (srt-19) [Source:RefSeq_peptide;Acc:NP_504182]Serpentine Receptor, class T family member (srt-19) [Source:RefSeq_peptide;Acc:NP_504182] BY ORTHOLOGY TO:F47D2.1
15.6094 -18.14 0.00462867 1300 3 1 3 [+] picture button
CBG24676 ENSCBRT00000007801 WD repeat protein 81. [Source:Uniprot/SWISSPROT;Acc:Q562E7]WD repeat protein 81. [Source:Uniprot/SWISSPROT;Acc:Q562E7] BY ORTHOLOGY TO:ENSMMUT00000003377
15.5543 -12.11 0.00482428 1300 3 1 4 [+] picture button
CBG10961 ENSCBRT00000001231 B0403.3 [Source:RefSeq_peptide;Acc:NP_509189]B0403.3 [Source:RefSeq_peptide;Acc:NP_509189] BY ORTHOLOGY TO:B0403.3
15.3058 -19.15 0.00497008 1300 3 2 3 [+] picture button
CBG23365 ENSCBRT00000011479 clh-6 encodes a voltage-gated chloride channel orthologous to the human CLCN7 chloride channel (OMIM:602727, which when mutated lead to osteopetrosis). although the precise role of CLH-6 in C. elegans development and/or behavior is not yet known, CLH-6 expression is detected in two GABA-ergic neurons, RMEL and RMER, suggesting that CLH-6 could play a role in membrane excitability and/or GABA packaging. as CLH-6 is also detected in many non-neuronal tissues, such as the gut and body wall muscle, it could also have a broader role in such as processes as transepithelial transport and muscle excitation. [Source: WormBase]clh-6 encodes a voltage-gated chloride channel orthologous to the human CLCN7 chloride channel (OMIM:602727, which when mutated lead to osteopetrosis). although the precise role of CLH-6 in C. elegans development and/or behavior is not yet known, CLH-6 expression is detected in two GABA-ergic neurons, RMEL and RMER, suggesting that CLH-6 could play a role in membrane excitability and/or GABA packaging. as CLH-6 is also detected in many non-neuronal tissues, such as the gut and body wall muscle, it could also have a broader role in such as processes as transepithelial transport and muscle excitation. [Source: WormBase] BY ORTHOLOGY TO:R07B7.1
15.2344 -16.35 0.00522834 1300 4 1 6 [+] picture button
CBG12329 ENSCBRT00000013217 The apm-1 gene encodes an adaptin: specifically, it encodes an ortholog of the mu1-II subunit of adaptor protein complex 1 (AP-1). [Source: WormBase]The apm-1 gene encodes an adaptin: specifically, it encodes an ortholog of the mu1-II subunit of adaptor protein complex 1 (AP-1). [Source: WormBase] BY ORTHOLOGY TO:F55A12.7
15.3905 -16.81 0.00569171 1300 2 2 2 [+] picture button
CBG23256 ENSCBRT00000012269 Uncharacterized aarF domain-containing protein kinase 1 precursor (EC 2.7.-.-). [Source:Uniprot/SWISSPROT;Acc:Q86TW2]Uncharacterized aarF domain-containing protein kinase 1 precursor (EC 2.7.-.-). [Source:Uniprot/SWISSPROT;Acc:Q86TW2] BY ORTHOLOGY TO:SINFRUT00000127853
15.2344 -19.44 0.00586586 1300 3 2 5 [+] picture button
CBG22874 ENSCBRT00000008963 Nuclear Hormone Receptor family member (nhr-84) [Source:RefSeq_peptide;Acc:NP_506968]Nuclear Hormone Receptor family member (nhr-84) [Source:RefSeq_peptide;Acc:NP_506968] BY ORTHOLOGY TO:T06C12.7
15.4923 -16.45 0.00602584 1300 3 1 3 [+] picture button
CBG03935 ENSCBRT00000009995 T10B11.9 [Source:RefSeq_peptide;Acc:NP_491984]T10B11.9 [Source:RefSeq_peptide;Acc:NP_491984] BY ORTHOLOGY TO:T10B11.9
17.7319 -25.34 0.00603031 1300 6 1 6 [+] picture button
CBG01733 ENSCBRT00000005601 T22B11.3 [Source:RefSeq_peptide;Acc:NP_500614]T22B11.3 [Source:RefSeq_peptide;Acc:NP_500614] BY ORTHOLOGY TO:T22B11.3
15.1374 -15.5 0.00627853 1300 2 1 3 [+] picture button

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