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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-42

160 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG10723 ENSCBRT00000012480 W03B1.8 [Source:RefSeq_peptide;Acc:NP_500546]W03B1.8 [Source:RefSeq_peptide;Acc:NP_500546] BY ORTHOLOGY TO:W03B1.8
15.0436 -17.56 1e-06 1300 11 2 12 [+] picture button
CBG08236 ENSCBRT00000003556 C54G4.4 [Source:RefSeq_peptide;Acc:NP_492201]C54G4.4 [Source:RefSeq_peptide;Acc:NP_492201] BY ORTHOLOGY TO:C54G4.4
14.469 -17.1 8.90994e-05 1300 4 1 2 [+] picture button
CBG02748 ENSCBRT00000007338 ZK930.2 [Source:RefSeq_peptide;Acc:NP_496539]ZK930.2 [Source:RefSeq_peptide;Acc:NP_496539] BY ORTHOLOGY TO:ZK930.2
20.1656 -40.12 9.05391e-05 1300 10 1 17 [+] picture button
CBG21716 ENSCBRT00000004570 C27B7.5 [Source:RefSeq_peptide;Acc:NP_501546]C27B7.5 [Source:RefSeq_peptide;Acc:NP_501546] BY ORTHOLOGY TO:C27B7.5
16.9194 -23.36 0.000101275 1300 2 1 7 [+] picture button
CBG09724 ENSCBRT00000005685 F32D8.1 [Source:RefSeq_peptide;Acc:NP_505770]F32D8.1 [Source:RefSeq_peptide;Acc:NP_505770] BY ORTHOLOGY TO:F32D8.1
15.8579 -20.96 0.00015409 1300 3 2 10 [+] picture button
CBG11969 ENSCBRT00000011755 T03F1.11 [Source:RefSeq_peptide;Acc:NP_491241]T03F1.11 [Source:RefSeq_peptide;Acc:NP_491241] BY ORTHOLOGY TO:T03F1.11
15.7875 -22.93 0.000276134 1300 4 1 9 [+] picture button
CBG00969 ENSCBRT00000002211 R53.5 [Source:RefSeq_peptide;Acc:NP_496154]R53.5 [Source:RefSeq_peptide;Acc:NP_496154] BY ORTHOLOGY TO:R53.5
15.5318 -19.86 0.000497819 1300 7 1 10 [+] picture button
CBG11970 ENSCBRT00000011752 Mitochondrial dimethyladenosine transferase 1, mitochondrial precursor (EC 2.1.1.-) (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase 1) (Mitochondrial 12S rRNA dimethylase 1) (Mitochondrial transcription factor B1). [Source:Uniprot/SWISSPROT;Acc:P91424]Mitochondrial dimethyladenosine transferase 1, mitochondrial precursor (EC 2.1.1.-) (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase 1) (Mitochondrial 12S rRNA dimethylase 1) (Mitochondrial transcription factor B1). [Source:Uniprot/SWISSPROT;Acc:P91424] BY ORTHOLOGY TO:T03F1.7
14.9853 -15.72 0.000550941 1300 4 1 4 [+] picture button
CBG22959 ENSCBRT00000008778 Replication factor C subunit 5 (Replication factor C 36 kDa subunit) (RF-C 36 kDa subunit) (RFC36) (Activator 1 36 kDa subunit) (A1 36 kDa subunit). [Source:Uniprot/SWISSPROT;Acc:P40937]Replication factor C subunit 5 (Replication factor C 36 kDa subunit) (RF-C 36 kDa subunit) (RFC36) (Activator 1 36 kDa subunit) (A1 36 kDa subunit). [Source:Uniprot/SWISSPROT;Acc:P40937] BY ORTHOLOGY TO:ENSOANT00000028942
15.4791 -18.7 0.000786485 1300 3 1 7 [+] picture button
CBG08342 ENSCBRT00000012941 cal-4 encodes one of five predicted C. elegans calcium-binding calmodulin homologs (the others being CAL-1, CAL-2, CAL-3 and CMD-1). as loss of cal-4 function via RNA-mediated interference (RNAi) does not result in any abnormalities, the precise role of CAL-4 in C. elegans development and/or behavior is not yet known. [Source: WormBase]cal-4 encodes one of five predicted C. elegans calcium-binding calmodulin homologs (the others being CAL-1, CAL-2, CAL-3 and CMD-1). as loss of cal-4 function via RNA-mediated interference (RNAi) does not result in any abnormalities, the precise role of CAL-4 in C. elegans development and/or behavior is not yet known. [Source: WormBase] BY ORTHOLOGY TO:T07G12.1
15.0958 -19.88 0.000912518 1300 4 1 5 [+] picture button
CBG03415 ENSCBRT00000007175 K08F4.3 [Source:RefSeq_peptide;Acc:NP_501843]K08F4.3 [Source:RefSeq_peptide;Acc:NP_501843] BY ORTHOLOGY TO:K08F4.3
15.3642 -15.64 0.00100257 1300 6 2 8 [+] picture button
CBG09769 ENSCBRT00000008064 C32A3.2 [Source:RefSeq_peptide;Acc:NP_497736]C32A3.2 [Source:RefSeq_peptide;Acc:NP_497736] BY ORTHOLOGY TO:C32A3.2
15.3455 -21.26 0.00113945 1300 4 1 4 [+] picture button
CBG21213 ENSCBRT00000000873 Zinc metalloproteinase nas-1 precursor (EC 3.4.24.21) (Nematode astacin 1). [Source:Uniprot/SWISSPROT;Acc:O62243]Zinc metalloproteinase nas-1 precursor (EC 3.4.24.21) (Nematode astacin 1). [Source:Uniprot/SWISSPROT;Acc:O62243] BY ORTHOLOGY TO:F45G2.1
15.2728 -20.7 0.00152465 1300 2 2 8 [+] picture button
CBG01579 ENSCBRT00000005482 K07H8.8 [Source:RefSeq_peptide;Acc:NP_501387]K07H8.8 [Source:RefSeq_peptide;Acc:NP_501387] BY ORTHOLOGY TO:K07H8.8
14.8078 -19.62 0.00161198 1300 4 1 8 [+] picture button
CBG04003 ENSCBRT00000009946 eukaryotic translation initiation factor 3 subuniteukaryotic translation initiation factor 3 subunit BY ORTHOLOGY TO:AAEL007945-RA
15.739 -15.8 0.00175082 1300 4 1 6 [+] picture button
CBG08563 ENSCBRT00000002851 Seven TM Receptor family member (str-178) [Source:RefSeq_peptide;Acc:NP_506176]Seven TM Receptor family member (str-178) [Source:RefSeq_peptide;Acc:NP_506176] BY ORTHOLOGY TO:R11D1.5
14.7527 -15.56 0.00181915 1300 3 2 2 [+] picture button
CBG17385 ENSCBRT00000001164 C03A3.3 [Source:RefSeq_peptide;Acc:NP_509880]C03A3.3 [Source:RefSeq_peptide;Acc:NP_509880] BY ORTHOLOGY TO:C03A3.3
14.8159 -16.55 0.001865 1300 5 1 4 [+] picture button
CBG21020 ENSCBRT00000000700 RNA exonuclease 4 (EC 3.1.-.-) (Exonuclease XPMC2) (hPMC2) (Prevents mitotic catastrophe 2 protein homolog). [Source:Uniprot/SWISSPROT;Acc:Q9GZR2]RNA exonuclease 4 (EC 3.1.-.-) (Exonuclease XPMC2) (hPMC2) (Prevents mitotic catastrophe 2 protein homolog). [Source:Uniprot/SWISSPROT;Acc:Q9GZR2] BY ORTHOLOGY TO:ENSGACT00000010702
15.0472 -18.37 0.00220435 1300 3 1 3 [+] picture button
CBG11337 ENSCBRT00000014373 F20D6.5 [Source:RefSeq_peptide;Acc:NP_505104]F20D6.5 [Source:RefSeq_peptide;Acc:NP_505104] BY ORTHOLOGY TO:F20D6.5
14.7835 -18.46 0.00252807 1300 7 2 7 [+] picture button
CBG12017 ENSCBRT00000011708 Probable histone-lysine N-methyltransferase lin-59 (EC 2.1.1.43) (Abnormal cell lineage protein 59). [Source:Uniprot/SWISSPROT;Acc:O44757]Probable histone-lysine N-methyltransferase lin-59 (EC 2.1.1.43) (Abnormal cell lineage protein 59). [Source:Uniprot/SWISSPROT;Acc:O44757] BY ORTHOLOGY TO:T12F5.4
14.6569 -17.99 0.00258199 1300 4 1 13 [+] picture button
CBG11004 ENSCBRT00000001200 F46H5.7a [Source:RefSeq_peptide;Acc:NP_741829]F46H5.7a [Source:RefSeq_peptide;Acc:NP_741829] BY ORTHOLOGY TO:F46H5.7b
14.5422 -15.9 0.00279887 1300 5 1 3 [+] picture button
CBG22009 ENSCBRT00000004331 F56C11.5 [Source:RefSeq_peptide;Acc:NP_490689]F56C11.5 [Source:RefSeq_peptide;Acc:NP_490689] BY ORTHOLOGY TO:F56C11.5
14.9162 -24.56 0.00294207 1300 3 1 11 [+] picture button
CBG02400 ENSCBRT00000006607 F07F6.1 [Source:RefSeq_peptide;Acc:NP_495032]F07F6.1 [Source:RefSeq_peptide;Acc:NP_495032] BY ORTHOLOGY TO:F07F6.1
14.6005 -16.15 0.00294436 1300 3 1 3 [+] picture button
CBG05897 ENSCBRT00000008983 hypothetical protein LOC511234 [Source:RefSeq_peptide;Acc:NP_001068970]hypothetical protein LOC511234 [Source:RefSeq_peptide;Acc:NP_001068970] BY ORTHOLOGY TO:ENSBTAT00000019215
14.2634 -12.14 0.00330881 1300 3 1 4 [+] picture button
CBG00397 ENSCBRT00000001973 C30H6.1 [Source:RefSeq_peptide;Acc:NP_503093]C30H6.1 [Source:RefSeq_peptide;Acc:NP_503093] BY ORTHOLOGY TO:C30H6.1
17.0124 -17.41 0.00333915 1300 3 1 10 [+] picture button
CBG15159 ENSCBRT00000010355 B0524.2 [Source:RefSeq_peptide;Acc:NP_497474]B0524.2 [Source:RefSeq_peptide;Acc:NP_497474] BY ORTHOLOGY TO:B0524.2
14.4602 -24.37 0.0035966 1300 2 2 2 [+] picture button
CBG14473 ENSCBRT00000003529 Niemann-Pick C1 protein precursor. [Source:Uniprot/SWISSPROT;Acc:O15118]Niemann-Pick C1 protein precursor. [Source:Uniprot/SWISSPROT;Acc:O15118] BY ORTHOLOGY TO:ENSOANT00000019309
14.4712 -16.4 0.00370216 1300 4 2 7 [+] picture button
CBG01044 ENSCBRT00000002059 Protein male abnormal 3. [Source:Uniprot/SWISSPROT;Acc:O18214]Protein male abnormal 3. [Source:Uniprot/SWISSPROT;Acc:O18214] BY ORTHOLOGY TO:Y53C12B.5a
14.3874 -17.38 0.00388333 1300 4 1 11 [+] picture button
CBG09490 ENSCBRT00000005993 lin-46 encodes one of two C. elegans paralogs of bacterial MoeA proteins and mammalian gephyrins (E domain, only). LIN-46 is predicted to function as a scaffolding protein for a developmental timing complex, and may also play a role in molybdenum cofactor biosynthesis. identified in screens for suppressors of precocious heterochronic mutations in lin-14 and lin-28, lin-46 is required for stage-specific developmental events at the third larval and adult stages of development. as a component of the heterochronic pathway, lin-46 appears to act immediately downstream of lin-28, which encodes a predicted RNA binding protein required for cell fate specification at the L2 stage. a LIN-46:GFP fusion protein is detected in the cytoplasm and non-nucleolar part of the nucleus of ventral and lateral hypodermal cells around the time of the larval molts. in addition, the LIN-46 fusion protein is detected in cell bodies and axons of the AVBL/R motor interneurons. [Source: WormBase]lin-46 encodes one of two C. elegans paralogs of bacterial MoeA proteins and mammalian gephyrins (E domain, only). LIN-46 is predicted to function as a scaffolding protein for a developmental timing complex, and may also play a role in molybdenum cofactor biosynthesis. identified in screens for suppressors of precocious heterochronic mutations in lin-14 and lin-28, lin-46 is required for stage-specific developmental events at the third larval and adult stages of development. as a component of the heterochronic pathway, lin-46 appears to act immediately downstream of lin-28, which encodes a predicted RNA binding protein required for cell fate specification at the L2 stage. a LIN-46:GFP fusion protein is detected in the cytoplasm and non-nucleolar part of the nucleus of ventral and lateral hypodermal cells around the time of the larval molts. in addition, the LIN-46 fusion protein is detected in cell bodies and axons of the AVBL/R motor interneurons. [Source: WormBase] BY ORTHOLOGY TO:R186.4
14.6669 -18.42 0.00391901 1300 3 2 4 [+] picture button
CBG00982 ENSCBRT00000002183 Y54G11B.1 [Source:RefSeq_peptide;Acc:NP_497004]Y54G11B.1 [Source:RefSeq_peptide;Acc:NP_497004] BY ORTHOLOGY TO:Y54G11B.1
15.0694 -16.79 0.00398052 1300 5 1 10 [+] picture button
CBG08512 ENSCBRT00000000273 hypothetical proteinhypothetical protein BY ORTHOLOGY TO:AAEL013086-RA
14.352 -19.17 0.00433256 1300 5 2 9 [+] picture button
CBG01979 ENSCBRT00000005851 flp-2 encodes a predicted FMRFamide-like peptide neurotransmitter. expressed in the pharyngeal neuron I5. [Source: WormBase]flp-2 encodes a predicted FMRFamide-like peptide neurotransmitter. expressed in the pharyngeal neuron I5. [Source: WormBase] BY ORTHOLOGY TO:W07E11.3b
16.743 -24.93 0.00454043 1300 5 1 10 [+] picture button
CBG21025 ENSCBRT00000000704 Y17G7B.3 is orthologous to the human gene HYDROXYACYLGLUTATHIONE HYDROLASE (HAGH. OMIM:138760), which when mutated leads to disease. [Source: WormBase]Y17G7B.3 is orthologous to the human gene HYDROXYACYLGLUTATHIONE HYDROLASE (HAGH. OMIM:138760), which when mutated leads to disease. [Source: WormBase] BY ORTHOLOGY TO:Y17G7B.3
16.7303 -19.73 0.00460679 1300 4 1 3 [+] picture button
CBG06621 ENSCBRT00000009770 C29G2.3 [Source:RefSeq_peptide;Acc:NP_503707]C29G2.3 [Source:RefSeq_peptide;Acc:NP_503707] BY ORTHOLOGY TO:C29G2.3
14.4845 -20.89 0.00483491 1300 2 1 2 [+] picture button
CBG09925 ENSCBRT00000008094 C33F10.11 [Source:RefSeq_peptide;Acc:NP_494868]C33F10.11 [Source:RefSeq_peptide;Acc:NP_494868] BY ORTHOLOGY TO:C33F10.11
14.6161 -17.66 0.00554532 1300 4 2 4 [+] picture button
CBG21626 ENSCBRT00000003833 Progestin and adipoQ receptor family member 3 (Progestin and adipoQ receptor family member III). [Source:Uniprot/SWISSPROT;Acc:Q6TCH7]Progestin and adipoQ receptor family member 3 (Progestin and adipoQ receptor family member III). [Source:Uniprot/SWISSPROT;Acc:Q6TCH7] BY ORTHOLOGY TO:ENSGACT00000023505
14.2634 -20.78 0.00555802 1300 5 2 14 [+] picture button
CBG14603 ENSCBRT00000003279 uvt-2 encodes a protein that contains four EF-hand calcium binding motifs with similarity to human calmodulin. mRNA weakly expressed in L1 through L4 larval stages and in the adult hermaphrodite. [Source: WormBase]uvt-2 encodes a protein that contains four EF-hand calcium binding motifs with similarity to human calmodulin. mRNA weakly expressed in L1 through L4 larval stages and in the adult hermaphrodite. [Source: WormBase] BY ORTHOLOGY TO:C24H10.5
14.2634 -17.38 0.00586858 1300 2 2 9 [+] picture button
CBG06149 ENSCBRT00000008348 Endothelial differentiation-related factor 1 (EDF-1) (Multiprotein- bridging factor 1) (MBF1) (Calmodulin-associated peptide 19) (CAP-19). [Source:Uniprot/SWISSPROT;Acc:P69736]Endothelial differentiation-related factor 1 (EDF-1) (Multiprotein- bridging factor 1) (MBF1) (Calmodulin-associated peptide 19) (CAP-19). [Source:Uniprot/SWISSPROT;Acc:P69736] BY ORTHOLOGY TO:ENSRNOT00000022196
14.3618 -17.69 0.00616525 1300 2 1 9 [+] picture button
CBG08747 ENSCBRT00000005232 WD repeat protein 79. [Source:Uniprot/SWISSPROT;Acc:Q9BUR4]WD repeat protein 79. [Source:Uniprot/SWISSPROT;Acc:Q9BUR4] BY ORTHOLOGY TO:ENSXETT00000032665
14.8019 -21.05 0.00658418 1300 3 1 3 [+] picture button
CBG04861 ENSCBRT00000010203 F26D2.10 [Source:RefSeq_peptide;Acc:NP_507152]F26D2.10 [Source:RefSeq_peptide;Acc:NP_507152] BY ORTHOLOGY TO:F26D2.10
16.3828 -23.56 0.00684325 1300 4 2 5 [+] picture button
CBG05848 ENSCBRT00000009251 Y40C5A.4a [Source:RefSeq_peptide;Acc:NP_741441]Y40C5A.4a [Source:RefSeq_peptide;Acc:NP_741441] BY ORTHOLOGY TO:Y40C5A.4b
14.1758 -18.49 0.00684474 1300 5 2 5 [+] picture button
CBG11534 ENSCBRT00000013805 C50B8.5 [Source:RefSeq_peptide;Acc:NP_506364]C50B8.5 [Source:RefSeq_peptide;Acc:NP_506364] BY ORTHOLOGY TO:C50B8.5
14.1737 -16.23 0.00697005 1300 6 2 6 [+] picture button
CBG23841 ENSCBRT00000006757 C15C6.3 [Source:RefSeq_peptide;Acc:NP_493082]C15C6.3 [Source:RefSeq_peptide;Acc:NP_493082] BY ORTHOLOGY TO:C15C6.3
16.3408 -18.1 0.00717773 1300 1 1 1 [+] picture button
CBG13912 ENSCBRT00000013646 similar to CG14903-PA (LOC391356), mRNA [Source:RefSeq_dna;Acc:NM_001013663]similar to CG14903-PA (LOC391356), mRNA [Source:RefSeq_dna;Acc:NM_001013663] BY ORTHOLOGY TO:ENSMMUT00000013393
14.1901 -18.47 0.00732885 1300 2 1 2 [+] picture button
ENSCBRT00000003329 Phosphatidylinositol 4-kinase type 2-beta (EC 2.7.1.67) (Phosphatidylinositol 4-kinase type II-beta). [Source:Uniprot/SWISSPROT;Acc:Q5ZIK0]Phosphatidylinositol 4-kinase type 2-beta (EC 2.7.1.67) (Phosphatidylinositol 4-kinase type II-beta). [Source:Uniprot/SWISSPROT;Acc:Q5ZIK0] BY ORTHOLOGY TO:ENSGALT00000023241
14.2188 -12.93 0.00754551 1300 4 1 4 [+] picture button
CBG18470 ENSCBRT00000000935 T26A8.2 [Source:RefSeq_peptide;Acc:NP_501434]T26A8.2 [Source:RefSeq_peptide;Acc:NP_501434] BY ORTHOLOGY TO:T26A8.2
16.1773 -26.92 0.00864325 1300 1 1 9 [+] picture button
CBG16928 ENSCBRT00000011716 C34E7.3 [Source:RefSeq_peptide;Acc:NP_510148]C34E7.3 [Source:RefSeq_peptide;Acc:NP_510148] BY ORTHOLOGY TO:C34E7.3
16.0032 -18.15 0.0105303 1300 4 1 7 [+] picture button
CBG11572 ENSCBRT00000011383 Homolog of Homo sapiens "MGC3207 protein [Source:IPI;Acc:IPI00005948]"Homolog of Homo sapiens "MGC3207 protein [Source:IPI;Acc:IPI00005948]" BY ORTHOLOGY TO:SINFRUT00000176817
14.2634 -19.74 0.01207 1300 3 1 3 [+] picture button
CBG08524 ENSCBRT00000002897 Proteasome activator complex subunit 4 (Proteasome activator PA200). [Source:Uniprot/SWISSPROT;Acc:Q14997]Proteasome activator complex subunit 4 (Proteasome activator PA200). [Source:Uniprot/SWISSPROT;Acc:Q14997] BY ORTHOLOGY TO:ENSMMUT00000011327
15.88 -19.8 0.0121068 1300 1 1 1 [+] picture button
CBG13481 ENSCBRT00000009398 T05C1.1 [Source:RefSeq_peptide;Acc:NP_494791]T05C1.1 [Source:RefSeq_peptide;Acc:NP_494791] BY ORTHOLOGY TO:T05C1.1
14.3796 -16.55 0.0122346 1300 4 2 4 [+] picture button

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