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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-41

205 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG18919 ENSCBRT00000014164 F13H6.1 [Source:RefSeq_peptide;Acc:NP_504620]F13H6.1 [Source:RefSeq_peptide;Acc:NP_504620] BY ORTHOLOGY TO:F13H6.1
15.0493 -15.87 6.36861e-05 1300 7 1 13 [+] picture button
CBG13202 ENSCBRT00000001116 T28D6.5a [Source:RefSeq_peptide;Acc:NP_499458]T28D6.5a [Source:RefSeq_peptide;Acc:NP_499458] BY ORTHOLOGY TO:T28D6.5b
15.5659 -20.79 0.000352914 1300 8 2 15 [+] picture button
CBG19308 ENSCBRT00000013505 F25B3.1 [Source:RefSeq_peptide;Acc:NP_505468]F25B3.1 [Source:RefSeq_peptide;Acc:NP_505468] BY ORTHOLOGY TO:F25B3.1
14.4591 -17.48 0.000358261 1300 6 2 13 [+] picture button
CBG09724 ENSCBRT00000005685 F32D8.1 [Source:RefSeq_peptide;Acc:NP_505770]F32D8.1 [Source:RefSeq_peptide;Acc:NP_505770] BY ORTHOLOGY TO:F32D8.1
15.3899 -22.25 0.000509506 1300 3 2 10 [+] picture button
CBG18350 ENSCBRT00000001602 BTB/POZ domain-containing protein KCTD7. [Source:Uniprot/SWISSPROT;Acc:Q96MP8]BTB/POZ domain-containing protein KCTD7. [Source:Uniprot/SWISSPROT;Acc:Q96MP8] BY ORTHOLOGY TO:ENST00000380830
15.2919 -17.95 0.000657375 1300 4 1 12 [+] picture button
CBG12017 ENSCBRT00000011708 Probable histone-lysine N-methyltransferase lin-59 (EC 2.1.1.43) (Abnormal cell lineage protein 59). [Source:Uniprot/SWISSPROT;Acc:O44757]Probable histone-lysine N-methyltransferase lin-59 (EC 2.1.1.43) (Abnormal cell lineage protein 59). [Source:Uniprot/SWISSPROT;Acc:O44757] BY ORTHOLOGY TO:T12F5.4
15.1743 -21.69 0.000940162 1300 4 1 13 [+] picture button
CBG13695 ENSCBRT00000012709 Y105C5A.23 [Source:RefSeq_peptide;Acc:NP_502887]Y105C5A.23 [Source:RefSeq_peptide;Acc:NP_502887] BY ORTHOLOGY TO:Y105C5A.23
15.5603 -17.45 0.00101326 1300 3 1 8 [+] picture button
CBG05355 ENSCBRT00000002814 DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6) (RPB1). [Source:Uniprot/SWISSPROT;Acc:P24928]DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6) (RPB1). [Source:Uniprot/SWISSPROT;Acc:P24928] BY ORTHOLOGY TO:ENSMMUT00000033227
15.8654 -20.77 0.00111004 1300 6 1 8 [+] picture button
CBG00969 ENSCBRT00000002211 R53.5 [Source:RefSeq_peptide;Acc:NP_496154]R53.5 [Source:RefSeq_peptide;Acc:NP_496154] BY ORTHOLOGY TO:R53.5
15.6557 -23.95 0.0011669 1300 7 1 10 [+] picture button
CBG02924 ENSCBRT00000006127 ZK930.7 [Source:RefSeq_peptide;Acc:NP_496543]ZK930.7 [Source:RefSeq_peptide;Acc:NP_496543] BY ORTHOLOGY TO:ZK930.7
14.945 -21.69 0.00118721 1300 5 1 8 [+] picture button
CBG00982 ENSCBRT00000002183 Y54G11B.1 [Source:RefSeq_peptide;Acc:NP_497004]Y54G11B.1 [Source:RefSeq_peptide;Acc:NP_497004] BY ORTHOLOGY TO:Y54G11B.1
14.9969 -20.53 0.00130892 1300 5 1 10 [+] picture button
CBG18403 ENSCBRT00000000995 Serpentine Receptor, class A (alpha) family member (sra-14) [Source:RefSeq_peptide;Acc:NP_496738]Serpentine Receptor, class A (alpha) family member (sra-14) [Source:RefSeq_peptide;Acc:NP_496738] BY ORTHOLOGY TO:F35C5.2
14.7116 -24.24 0.0015616 1300 3 1 5 [+] picture button
CBG23169 ENSCBRT00000012110 F47G9.3 [Source:RefSeq_peptide;Acc:NP_505875]F47G9.3 [Source:RefSeq_peptide;Acc:NP_505875] BY ORTHOLOGY TO:F47G9.3
15.0764 -18.94 0.00159714 1300 3 2 10 [+] picture button
CBG17943 ENSCBRT00000002990 NHL (ring finger b-box coiled coil) domain containing family member (nhl-2) [Source:RefSeq_peptide;Acc:NP_498026]NHL (ring finger b-box coiled coil) domain containing family member (nhl-2) [Source:RefSeq_peptide;Acc:NP_498026] BY ORTHOLOGY TO:F26F4.7
15.2655 -19.67 0.00163702 1300 5 2 9 [+] picture button
CBG09577 ENSCBRT00000005924 B0024.2 [Source:RefSeq_peptide;Acc:NP_505647]B0024.2 [Source:RefSeq_peptide;Acc:NP_505647] BY ORTHOLOGY TO:B0024.2
14.9761 -18.15 0.00166631 1300 7 1 9 [+] picture button
CBG14603 ENSCBRT00000003279 uvt-2 encodes a protein that contains four EF-hand calcium binding motifs with similarity to human calmodulin. mRNA weakly expressed in L1 through L4 larval stages and in the adult hermaphrodite. [Source: WormBase]uvt-2 encodes a protein that contains four EF-hand calcium binding motifs with similarity to human calmodulin. mRNA weakly expressed in L1 through L4 larval stages and in the adult hermaphrodite. [Source: WormBase] BY ORTHOLOGY TO:C24H10.5
14.8806 -20.56 0.00168459 1300 2 2 9 [+] picture button
CBG21213 ENSCBRT00000000873 Zinc metalloproteinase nas-1 precursor (EC 3.4.24.21) (Nematode astacin 1). [Source:Uniprot/SWISSPROT;Acc:O62243]Zinc metalloproteinase nas-1 precursor (EC 3.4.24.21) (Nematode astacin 1). [Source:Uniprot/SWISSPROT;Acc:O62243] BY ORTHOLOGY TO:F45G2.1
15.3958 -18.84 0.00178056 1300 2 2 8 [+] picture button
CBG11969 ENSCBRT00000011755 T03F1.11 [Source:RefSeq_peptide;Acc:NP_491241]T03F1.11 [Source:RefSeq_peptide;Acc:NP_491241] BY ORTHOLOGY TO:T03F1.11
14.9263 -20.53 0.00183714 1300 4 1 9 [+] picture button
CBG01358 ENSCBRT00000002240 Seven TM Receptor family member (str-131) [Source:RefSeq_peptide;Acc:NP_505084]Seven TM Receptor family member (str-131) [Source:RefSeq_peptide;Acc:NP_505084] BY ORTHOLOGY TO:C09H5.6
15.2814 -24.06 0.00197354 1300 4 1 9 [+] picture button
CBG03854 ENSCBRT00000008695 Enhancer of Ksr-1 Lethality family member (ekl-2) [Source:RefSeq_peptide;Acc:NP_492622]Enhancer of Ksr-1 Lethality family member (ekl-2) [Source:RefSeq_peptide;Acc:NP_492622] BY ORTHOLOGY TO:F52F12.6
14.82 -22.25 0.00206293 1300 5 1 10 [+] picture button
CBG03655 ENSCBRT00000008752 SCO cytochrome oxidase deficient homolog 1 (yeast) [Source:MarkerSymbol;Acc:MGI:106362]SCO cytochrome oxidase deficient homolog 1 (yeast) [Source:MarkerSymbol;Acc:MGI:106362] BY ORTHOLOGY TO:ENSMUST00000092996
14.4631 -19.72 0.0021298 1300 4 1 7 [+] picture button
CBG21716 ENSCBRT00000004570 C27B7.5 [Source:RefSeq_peptide;Acc:NP_501546]C27B7.5 [Source:RefSeq_peptide;Acc:NP_501546] BY ORTHOLOGY TO:C27B7.5
15.468 -18.82 0.00244536 1300 2 1 7 [+] picture button
CBG07586 ENSCBRT00000011127 predicted gene, OTTMUSG00000008561 (OTTMUSG00000008561), mRNA [Source:RefSeq_dna;Acc:NM_001085549]predicted gene, OTTMUSG00000008561 (OTTMUSG00000008561), mRNA [Source:RefSeq_dna;Acc:NM_001085549] BY ORTHOLOGY TO:ENSMUST00000094894
15.8349 -24.81 0.00260677 1300 4 1 5 [+] picture button
CBG15755 ENSCBRT00000012086 UNCoordinated family member (unc-25) [Source:RefSeq_peptide;Acc:NP_499689]UNCoordinated family member (unc-25) [Source:RefSeq_peptide;Acc:NP_499689] BY ORTHOLOGY TO:Y37D8A.23a
14.7253 -22.77 0.00280576 1300 3 1 5 [+] picture button
CBG17724 ENSCBRT00000000169 Protein sidekick homolog precursor (Neuronal IgCAM protein 4). [Source:Uniprot/SWISSPROT;Acc:Q9N3X8]Protein sidekick homolog precursor (Neuronal IgCAM protein 4). [Source:Uniprot/SWISSPROT;Acc:Q9N3X8] BY ORTHOLOGY TO:Y42H9B.2
14.3911 -16.89 0.00297356 1300 5 2 9 [+] picture button
CBG18111 ENSCBRT00000003267 Dual oxidase maturation factor 2 (Dual oxidase activator 2). [Source:Uniprot/SWISSPROT;Acc:Q1HG44]Dual oxidase maturation factor 2 (Dual oxidase activator 2). [Source:Uniprot/SWISSPROT;Acc:Q1HG44] BY ORTHOLOGY TO:ENSPTRT00000012973
14.952 -19.24 0.00337146 1300 3 2 11 [+] picture button
CBG09229 ENSCBRT00000001841 toh-1 encodes an astacin-like metalloprotease. TOH-1 is predicted to function as a secreted protease. experiments that specifically assessed toh-1's role in molting indicate that toh-1(RNAi) causes no abnormal phenotypes. [Source: WormBase]toh-1 encodes an astacin-like metalloprotease. TOH-1 is predicted to function as a secreted protease. experiments that specifically assessed toh-1's role in molting indicate that toh-1(RNAi) causes no abnormal phenotypes. [Source: WormBase] BY ORTHOLOGY TO:T24A11.3
14.5979 -19.97 0.00347183 1300 5 2 14 [+] picture button
CBG07050 ENSCBRT00000012418 K01A2.10 [Source:RefSeq_peptide;Acc:NP_493709]K01A2.10 [Source:RefSeq_peptide;Acc:NP_493709] BY ORTHOLOGY TO:K01A2.10
14.8806 -21.5 0.0036109 1300 4 1 9 [+] picture button
CBG11983 ENSCBRT00000011745 T28F2.7 [Source:RefSeq_peptide;Acc:NP_491196]T28F2.7 [Source:RefSeq_peptide;Acc:NP_491196] BY ORTHOLOGY TO:T28F2.7
14.6758 -18.38 0.00370175 1300 7 1 9 [+] picture button
CBG12758 ENSCBRT00000013717 ser-3 encodes a putative homolog of mammalian 5-HT4 metabotropic serotonin receptors. SER-3 is required for normal inhibition of movement by 5-HT, with ser-3 mutants being hyperactive and excessively curling their male tails (but this phenotype is reversed by exogenous 5-HT, with ser-3 mutants then becoming sluggish). SER-3 activity is required for normally high brood sizes and for embryonic development, and weakly required for pharyngeal pumping. SER-3 is expressed in pharynx, head and tail neurons, nerve ring, and intestine. [Source: WormBase]ser-3 encodes a putative homolog of mammalian 5-HT4 metabotropic serotonin receptors. SER-3 is required for normal inhibition of movement by 5-HT, with ser-3 mutants being hyperactive and excessively curling their male tails (but this phenotype is reversed by exogenous 5-HT, with ser-3 mutants then becoming sluggish). SER-3 activity is required for normally high brood sizes and for embryonic development, and weakly required for pharyngeal pumping. SER-3 is expressed in pharynx, head and tail neurons, nerve ring, and intestine. [Source: WormBase] BY ORTHOLOGY TO:K02F2.6
14.4398 -17.92 0.00382379 1300 6 2 12 [+] picture button
CBG13332 ENSCBRT00000001012 ZK673.6 [Source:RefSeq_peptide;Acc:NP_496249]ZK673.6 [Source:RefSeq_peptide;Acc:NP_496249] BY ORTHOLOGY TO:ZK673.6
17.0577 -26.28 0.00389093 1300 2 1 9 [+] picture button
CBG16546 ENSCBRT00000014587 This gene encodes a homolog of mammalian TNX [Source: WormBase]This gene encodes a homolog of mammalian TNX [Source: WormBase] BY ORTHOLOGY TO:R13F6.4a
14.5738 -19.65 0.00393741 1300 4 1 7 [+] picture button
CBG02851 ENSCBRT00000006221 F07A11.1 [Source:RefSeq_peptide;Acc:NP_496478]F07A11.1 [Source:RefSeq_peptide;Acc:NP_496478] BY ORTHOLOGY TO:F07A11.1
14.4207 -18.29 0.00405688 1300 5 1 8 [+] picture button
CBG00873 ENSCBRT00000003961 F42A8.1 [Source:RefSeq_peptide;Acc:NP_495991]F42A8.1 [Source:RefSeq_peptide;Acc:NP_495991] BY ORTHOLOGY TO:F42A8.1
15.0168 -19.56 0.00413351 1300 6 2 11 [+] picture button
CBG05460 ENSCBRT00000004771 voltage-gated potassium channelvoltage-gated potassium channel BY ORTHOLOGY TO:AAEL007104-RA
14.9081 -19.22 0.00420987 1300 6 1 8 [+] picture button
CBG05771 ENSCBRT00000009131 Zinc metalloproteinase nas-8 precursor (EC 3.4.24.21) (Nematode astacin 8). [Source:Uniprot/SWISSPROT;Acc:Q18439]Zinc metalloproteinase nas-8 precursor (EC 3.4.24.21) (Nematode astacin 8). [Source:Uniprot/SWISSPROT;Acc:Q18439] BY ORTHOLOGY TO:C34D4.9
14.2136 -20.13 0.00422581 1300 8 2 12 [+] picture button
CBG16935 ENSCBRT00000011856 Equilibrative nucleoside transporter 3 CG11010-PA [Source:RefSeq_peptide;Acc:NP_648608]Equilibrative nucleoside transporter 3 CG11010-PA [Source:RefSeq_peptide;Acc:NP_648608] BY ORTHOLOGY TO:CG11010-RA
14.6089 -21.87 0.00440934 1300 7 1 6 [+] picture button
CBG22959 ENSCBRT00000008778 Replication factor C subunit 5 (Replication factor C 36 kDa subunit) (RF-C 36 kDa subunit) (RFC36) (Activator 1 36 kDa subunit) (A1 36 kDa subunit). [Source:Uniprot/SWISSPROT;Acc:P40937]Replication factor C subunit 5 (Replication factor C 36 kDa subunit) (RF-C 36 kDa subunit) (RFC36) (Activator 1 36 kDa subunit) (A1 36 kDa subunit). [Source:Uniprot/SWISSPROT;Acc:P40937] BY ORTHOLOGY TO:ENSOANT00000028942
15.101 -22.64 0.00452006 1300 3 1 7 [+] picture button
CBG04117 ENSCBRT00000010085 Y71F9B.8 [Source:RefSeq_peptide;Acc:NP_491035]Y71F9B.8 [Source:RefSeq_peptide;Acc:NP_491035] BY ORTHOLOGY TO:Y71F9B.8
14.6107 -15.51 0.00479469 1300 7 2 14 [+] picture button
CBG05936 ENSCBRT00000009013 C08G9.2 [Source:RefSeq_peptide;Acc:NP_501249]C08G9.2 [Source:RefSeq_peptide;Acc:NP_501249] BY ORTHOLOGY TO:C08G9.2
14.423 -22.99 0.00480929 1300 3 1 8 [+] picture button
CBG01979 ENSCBRT00000005851 flp-2 encodes a predicted FMRFamide-like peptide neurotransmitter. expressed in the pharyngeal neuron I5. [Source: WormBase]flp-2 encodes a predicted FMRFamide-like peptide neurotransmitter. expressed in the pharyngeal neuron I5. [Source: WormBase] BY ORTHOLOGY TO:W07E11.3b
15.0947 -17.9 0.00502462 1300 5 1 10 [+] picture button
CBG21626 ENSCBRT00000003833 Progestin and adipoQ receptor family member 3 (Progestin and adipoQ receptor family member III). [Source:Uniprot/SWISSPROT;Acc:Q6TCH7]Progestin and adipoQ receptor family member 3 (Progestin and adipoQ receptor family member III). [Source:Uniprot/SWISSPROT;Acc:Q6TCH7] BY ORTHOLOGY TO:ENSGACT00000023505
14.2932 -20.87 0.00508083 1300 5 2 14 [+] picture button
CBG01579 ENSCBRT00000005482 K07H8.8 [Source:RefSeq_peptide;Acc:NP_501387]K07H8.8 [Source:RefSeq_peptide;Acc:NP_501387] BY ORTHOLOGY TO:K07H8.8
14.2456 -18.22 0.00524855 1300 4 1 8 [+] picture button
CBG04127 ENSCBRT00000010047 F40E3.2 [Source:RefSeq_peptide;Acc:NP_491018]F40E3.2 [Source:RefSeq_peptide;Acc:NP_491018] BY ORTHOLOGY TO:F40E3.2
16.6848 -26.95 0.00577812 1300 5 1 10 [+] picture button
CBG06070 ENSCBRT00000008481 Protein LRP16. [Source:Uniprot/SWISSPROT;Acc:Q9BQ69]Protein LRP16. [Source:Uniprot/SWISSPROT;Acc:Q9BQ69] BY ORTHOLOGY TO:ENST00000255681
14.1953 -16.88 0.00579424 1300 7 1 11 [+] picture button
CBG09223 ENSCBRT00000001839 acy-3 encodes a predicted member of the adenylyl cyclase family with highest similarity to human adenylate cyclase type 5. expressed in the support cells of ciliated neurons, in the head and tail ganglia, in two pairs of neurons in the retrovesicular ganglia, and in the spermatheca. [Source: WormBase]acy-3 encodes a predicted member of the adenylyl cyclase family with highest similarity to human adenylate cyclase type 5. expressed in the support cells of ciliated neurons, in the head and tail ganglia, in two pairs of neurons in the retrovesicular ganglia, and in the spermatheca. [Source: WormBase] BY ORTHOLOGY TO:C44F1.5
14.3998 -17.63 0.00585929 1300 5 2 11 [+] picture button
CBG19271 ENSCBRT00000013474 F36D4.4 [Source:RefSeq_peptide;Acc:NP_505436]F36D4.4 [Source:RefSeq_peptide;Acc:NP_505436] BY ORTHOLOGY TO:F36D4.4
14.4068 -19.01 0.00635735 1300 2 1 5 [+] picture button
CBG20408 ENSCBRT00000003627 cell division cycle 40 homolog [Source:RefSeq_peptide;Acc:NP_001006407]cell division cycle 40 homolog [Source:RefSeq_peptide;Acc:NP_001006407] BY ORTHOLOGY TO:ENSGALT00000024299
16.5665 -20.57 0.00654885 1300 1 1 8 [+] picture button
CBG13135 ENSCBRT00000000111 Uncharacterized protein C1orf53. [Source:Uniprot/SWISSPROT;Acc:Q5VUE5]Uncharacterized protein C1orf53. [Source:Uniprot/SWISSPROT;Acc:Q5VUE5] BY ORTHOLOGY TO:ENSGALT00000003481
14.25 -18.87 0.00675277 1300 3 2 7 [+] picture button
CBG02415 ENSCBRT00000006578 F12A10.1 [Source:RefSeq_peptide;Acc:NP_495048]F12A10.1 [Source:RefSeq_peptide;Acc:NP_495048] BY ORTHOLOGY TO:F12A10.1
14.1059 -15.77 0.00690165 1300 6 1 7 [+] picture button

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