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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-40

196 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG23585 ENSCBRT00000000946 conserved hypothetical proteinconserved hypothetical protein BY ORTHOLOGY TO:AAEL008852-RA
14.5743 -21.68 4.10046e-05 1300 5 1 3 [+] picture button
CBG05460 ENSCBRT00000004771 voltage-gated potassium channelvoltage-gated potassium channel BY ORTHOLOGY TO:AAEL007104-RA
15.0365 -22.74 6.00221e-05 1300 6 1 8 [+] picture button
CBG15755 ENSCBRT00000012086 UNCoordinated family member (unc-25) [Source:RefSeq_peptide;Acc:NP_499689]UNCoordinated family member (unc-25) [Source:RefSeq_peptide;Acc:NP_499689] BY ORTHOLOGY TO:Y37D8A.23a
15.0558 -23.69 0.000104893 1300 3 1 5 [+] picture button
CBG00969 ENSCBRT00000002211 R53.5 [Source:RefSeq_peptide;Acc:NP_496154]R53.5 [Source:RefSeq_peptide;Acc:NP_496154] BY ORTHOLOGY TO:R53.5
15.1864 -24.71 0.000692105 1300 7 1 10 [+] picture button
CBG18919 ENSCBRT00000014164 F13H6.1 [Source:RefSeq_peptide;Acc:NP_504620]F13H6.1 [Source:RefSeq_peptide;Acc:NP_504620] BY ORTHOLOGY TO:F13H6.1
15.6662 -21.52 0.00070407 1300 7 1 13 [+] picture button
CBG00578 ENSCBRT00000003118 W01C9.2 [Source:RefSeq_peptide;Acc:NP_495803]W01C9.2 [Source:RefSeq_peptide;Acc:NP_495803] BY ORTHOLOGY TO:W01C9.2
16.3959 -22.49 0.000947874 1300 5 2 11 [+] picture button
CBG08512 ENSCBRT00000000273 hypothetical proteinhypothetical protein BY ORTHOLOGY TO:AAEL013086-RA
15.2222 -24.31 0.00124846 1300 5 2 9 [+] picture button
CBG23276 ENSCBRT00000012302 secreted modular calcium-binding proteinsecreted modular calcium-binding protein BY ORTHOLOGY TO:AAEL012043-RA
15.1766 -20.39 0.00137234 1300 5 2 7 [+] picture button
CBG21716 ENSCBRT00000004570 C27B7.5 [Source:RefSeq_peptide;Acc:NP_501546]C27B7.5 [Source:RefSeq_peptide;Acc:NP_501546] BY ORTHOLOGY TO:C27B7.5
15.7877 -26.28 0.00178001 1300 2 1 7 [+] picture button
CBG03655 ENSCBRT00000008752 SCO cytochrome oxidase deficient homolog 1 (yeast) [Source:MarkerSymbol;Acc:MGI:106362]SCO cytochrome oxidase deficient homolog 1 (yeast) [Source:MarkerSymbol;Acc:MGI:106362] BY ORTHOLOGY TO:ENSMUST00000092996
15.1001 -23.27 0.00185785 1300 4 1 7 [+] picture button
CBG03854 ENSCBRT00000008695 Enhancer of Ksr-1 Lethality family member (ekl-2) [Source:RefSeq_peptide;Acc:NP_492622]Enhancer of Ksr-1 Lethality family member (ekl-2) [Source:RefSeq_peptide;Acc:NP_492622] BY ORTHOLOGY TO:F52F12.6
15.0457 -23 0.0018616 1300 5 1 10 [+] picture button
CBG00873 ENSCBRT00000003961 F42A8.1 [Source:RefSeq_peptide;Acc:NP_495991]F42A8.1 [Source:RefSeq_peptide;Acc:NP_495991] BY ORTHOLOGY TO:F42A8.1
15.3414 -27.06 0.00201983 1300 6 2 11 [+] picture button
CBG03643 ENSCBRT00000006543 R07E5.15 [Source:RefSeq_peptide;Acc:NP_497889]R07E5.15 [Source:RefSeq_peptide;Acc:NP_497889] BY ORTHOLOGY TO:R07E5.15
14.8322 -26.7 0.00208198 1300 7 1 7 [+] picture button
CBG17724 ENSCBRT00000000169 Protein sidekick homolog precursor (Neuronal IgCAM protein 4). [Source:Uniprot/SWISSPROT;Acc:Q9N3X8]Protein sidekick homolog precursor (Neuronal IgCAM protein 4). [Source:Uniprot/SWISSPROT;Acc:Q9N3X8] BY ORTHOLOGY TO:Y42H9B.2
14.8131 -19.83 0.00216043 1300 5 2 9 [+] picture button
CBG17943 ENSCBRT00000002990 NHL (ring finger b-box coiled coil) domain containing family member (nhl-2) [Source:RefSeq_peptide;Acc:NP_498026]NHL (ring finger b-box coiled coil) domain containing family member (nhl-2) [Source:RefSeq_peptide;Acc:NP_498026] BY ORTHOLOGY TO:F26F4.7
15.0979 -19.01 0.00231191 1300 5 2 9 [+] picture button
CBG18274 ENSCBRT00000001666 M142.5 [Source:RefSeq_peptide;Acc:NP_499402]M142.5 [Source:RefSeq_peptide;Acc:NP_499402] BY ORTHOLOGY TO:M142.5
14.6359 -17.63 0.00253075 1300 9 1 13 [+] picture button
CBG09229 ENSCBRT00000001841 toh-1 encodes an astacin-like metalloprotease. TOH-1 is predicted to function as a secreted protease. experiments that specifically assessed toh-1's role in molting indicate that toh-1(RNAi) causes no abnormal phenotypes. [Source: WormBase]toh-1 encodes an astacin-like metalloprotease. TOH-1 is predicted to function as a secreted protease. experiments that specifically assessed toh-1's role in molting indicate that toh-1(RNAi) causes no abnormal phenotypes. [Source: WormBase] BY ORTHOLOGY TO:T24A11.3
14.9218 -18.12 0.00258924 1300 5 2 14 [+] picture button
CBG12017 ENSCBRT00000011708 Probable histone-lysine N-methyltransferase lin-59 (EC 2.1.1.43) (Abnormal cell lineage protein 59). [Source:Uniprot/SWISSPROT;Acc:O44757]Probable histone-lysine N-methyltransferase lin-59 (EC 2.1.1.43) (Abnormal cell lineage protein 59). [Source:Uniprot/SWISSPROT;Acc:O44757] BY ORTHOLOGY TO:T12F5.4
14.8131 -20.41 0.00272521 1300 4 1 13 [+] picture button
CBG20395 ENSCBRT00000003640 chromatin modifying protein 2B [Source:MarkerSymbol;Acc:MGI:1916192]chromatin modifying protein 2B [Source:MarkerSymbol;Acc:MGI:1916192] BY ORTHOLOGY TO:ENSMUST00000004965
15.3809 -24.14 0.00273538 1300 8 1 13 [+] picture button
CBG13135 ENSCBRT00000000111 Uncharacterized protein C1orf53. [Source:Uniprot/SWISSPROT;Acc:Q5VUE5]Uncharacterized protein C1orf53. [Source:Uniprot/SWISSPROT;Acc:Q5VUE5] BY ORTHOLOGY TO:ENSGALT00000003481
14.87 -25.22 0.00287138 1300 3 2 7 [+] picture button
CBG20559 ENSCBRT00000000044 C37C3.11 [Source:RefSeq_peptide;Acc:NP_505027]C37C3.11 [Source:RefSeq_peptide;Acc:NP_505027] BY ORTHOLOGY TO:C37C3.11
14.3468 -17.13 0.00304384 1300 9 1 9 [+] picture button
ENSCBRT00000002550 cDNA sequence BC038925 [Source:MarkerSymbol;Acc:MGI:2679717]cDNA sequence BC038925 [Source:MarkerSymbol;Acc:MGI:2679717] BY ORTHOLOGY TO:ENSMUST00000057773
14.3454 -21.14 0.00305269 1300 2 1 4 [+] picture button
CBG16636 ENSCBRT00000014668 F10E9.2 [Source:RefSeq_peptide;Acc:NP_498827]F10E9.2 [Source:RefSeq_peptide;Acc:NP_498827] BY ORTHOLOGY TO:F10E9.2
16.1209 -20.39 0.00336277 1300 6 1 11 [+] picture button
CBG06149 ENSCBRT00000008348 Endothelial differentiation-related factor 1 (EDF-1) (Multiprotein- bridging factor 1) (MBF1) (Calmodulin-associated peptide 19) (CAP-19). [Source:Uniprot/SWISSPROT;Acc:P69736]Endothelial differentiation-related factor 1 (EDF-1) (Multiprotein- bridging factor 1) (MBF1) (Calmodulin-associated peptide 19) (CAP-19). [Source:Uniprot/SWISSPROT;Acc:P69736] BY ORTHOLOGY TO:ENSRNOT00000022196
16.6648 -27.26 0.0034042 1300 2 1 9 [+] picture button
CBG13973 ENSCBRT00000013608 HscB iron-sulfur cluster co-chaperone homolog (E. coli) [Source:MarkerSymbol;Acc:MGI:2141135]HscB iron-sulfur cluster co-chaperone homolog (E. coli) [Source:MarkerSymbol;Acc:MGI:2141135] BY ORTHOLOGY TO:ENSMUST00000056937
14.7065 -27.56 0.00350439 1300 4 1 4 [+] picture button
CBG18736 ENSCBRT00000014526 Y64G10A.6 [Source:RefSeq_peptide;Acc:NP_502736]Y64G10A.6 [Source:RefSeq_peptide;Acc:NP_502736] BY ORTHOLOGY TO:Y64G10A.6
14.6893 -23.18 0.00353614 1300 3 1 8 [+] picture button
CBG13575 ENSCBRT00000007730 Nuclear Hormone Receptor family member (nhr-146) [Source:RefSeq_peptide;Acc:NP_741322]Nuclear Hormone Receptor family member (nhr-146) [Source:RefSeq_peptide;Acc:NP_741322] BY ORTHOLOGY TO:Y41D4B.26
14.8131 -24.5 0.0036007 1300 5 2 7 [+] picture button
CBG23634 ENSCBRT00000002045 F58G6.4 [Source:RefSeq_peptide;Acc:NP_501715]F58G6.4 [Source:RefSeq_peptide;Acc:NP_501715] BY ORTHOLOGY TO:F58G6.4
14.9272 -20.08 0.00375154 1300 2 1 2 [+] picture button
CBG01579 ENSCBRT00000005482 K07H8.8 [Source:RefSeq_peptide;Acc:NP_501387]K07H8.8 [Source:RefSeq_peptide;Acc:NP_501387] BY ORTHOLOGY TO:K07H8.8
14.5719 -18.89 0.00382233 1300 4 1 8 [+] picture button
CBG14603 ENSCBRT00000003279 uvt-2 encodes a protein that contains four EF-hand calcium binding motifs with similarity to human calmodulin. mRNA weakly expressed in L1 through L4 larval stages and in the adult hermaphrodite. [Source: WormBase]uvt-2 encodes a protein that contains four EF-hand calcium binding motifs with similarity to human calmodulin. mRNA weakly expressed in L1 through L4 larval stages and in the adult hermaphrodite. [Source: WormBase] BY ORTHOLOGY TO:C24H10.5
14.6182 -20.33 0.0039495 1300 2 2 9 [+] picture button
CBG13063 ENSCBRT00000000091 DNA ligase 1 (EC 6.5.1.1) (DNA ligase I) (Polydeoxyribonucleotide synthase [ATP] 1). [Source:Uniprot/SWISSPROT;Acc:P18858]DNA ligase 1 (EC 6.5.1.1) (DNA ligase I) (Polydeoxyribonucleotide synthase [ATP] 1). [Source:Uniprot/SWISSPROT;Acc:P18858] BY ORTHOLOGY TO:ENSMODT00000016996
14.554 -19.07 0.00395202 1300 6 1 8 [+] picture button
CBG02924 ENSCBRT00000006127 ZK930.7 [Source:RefSeq_peptide;Acc:NP_496543]ZK930.7 [Source:RefSeq_peptide;Acc:NP_496543] BY ORTHOLOGY TO:ZK930.7
14.7791 -27.73 0.00411655 1300 5 1 8 [+] picture button
CBG04003 ENSCBRT00000009946 eukaryotic translation initiation factor 3 subuniteukaryotic translation initiation factor 3 subunit BY ORTHOLOGY TO:AAEL007945-RA
14.5208 -26.88 0.00422617 1300 4 1 6 [+] picture button
CBG11337 ENSCBRT00000014373 F20D6.5 [Source:RefSeq_peptide;Acc:NP_505104]F20D6.5 [Source:RefSeq_peptide;Acc:NP_505104] BY ORTHOLOGY TO:F20D6.5
14.9389 -24.46 0.00428268 1300 7 2 7 [+] picture button
CBG23049 ENSCBRT00000006319 GeMiNin homolog family member (gmn-1) [Source:RefSeq_peptide;Acc:NP_499589]GeMiNin homolog family member (gmn-1) [Source:RefSeq_peptide;Acc:NP_499589] BY ORTHOLOGY TO:Y75B8A.17
17.0024 -34.1 0.00428268 1300 4 1 13 [+] picture button
CBG17911 ENSCBRT00000000458 F48G7.4 [Source:RefSeq_peptide;Acc:NP_503266]F48G7.4 [Source:RefSeq_peptide;Acc:NP_503266] BY ORTHOLOGY TO:F48G7.4
16.1032 -26.16 0.0044525 1300 5 1 5 [+] picture button
CBG11380 ENSCBRT00000014029 col-43 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens. [Source: WormBase]col-43 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens. [Source: WormBase] BY ORTHOLOGY TO:ZC513.8
14.2284 -25.02 0.00463021 1300 8 2 8 [+] picture button
CBG18350 ENSCBRT00000001602 BTB/POZ domain-containing protein KCTD7. [Source:Uniprot/SWISSPROT;Acc:Q96MP8]BTB/POZ domain-containing protein KCTD7. [Source:Uniprot/SWISSPROT;Acc:Q96MP8] BY ORTHOLOGY TO:ENST00000380830
14.4418 -17.26 0.005115 1300 4 1 12 [+] picture button
CBG21626 ENSCBRT00000003833 Progestin and adipoQ receptor family member 3 (Progestin and adipoQ receptor family member III). [Source:Uniprot/SWISSPROT;Acc:Q6TCH7]Progestin and adipoQ receptor family member 3 (Progestin and adipoQ receptor family member III). [Source:Uniprot/SWISSPROT;Acc:Q6TCH7] BY ORTHOLOGY TO:ENSGACT00000023505
14.4233 -21.87 0.00543321 1300 5 2 14 [+] picture button
CBG09925 ENSCBRT00000008094 C33F10.11 [Source:RefSeq_peptide;Acc:NP_494868]C33F10.11 [Source:RefSeq_peptide;Acc:NP_494868] BY ORTHOLOGY TO:C33F10.11
14.382 -19.82 0.00553959 1300 4 2 4 [+] picture button
CBG09724 ENSCBRT00000005685 F32D8.1 [Source:RefSeq_peptide;Acc:NP_505770]F32D8.1 [Source:RefSeq_peptide;Acc:NP_505770] BY ORTHOLOGY TO:F32D8.1
14.3443 -23.59 0.00595891 1300 3 2 10 [+] picture button
ENSCBRT00000012606 Transmembrane protein 145. [Source:Uniprot/SWISSPROT;Acc:Q8NBT3]Transmembrane protein 145. [Source:Uniprot/SWISSPROT;Acc:Q8NBT3] BY ORTHOLOGY TO:ENSXETT00000026317
16.7917 -28.33 0.00637634 1300 2 1 2 [+] picture button
CBG01818 ENSCBRT00000002885 F09E8.1 [Source:RefSeq_peptide;Acc:NP_502529]F09E8.1 [Source:RefSeq_peptide;Acc:NP_502529] BY ORTHOLOGY TO:F09E8.1
14.3367 -17.95 0.00715604 1300 2 2 2 [+] picture button
CBG11224 ENSCBRT00000014490 rpy-1 is orthologous to the human gene 43KDA ACETYLCHOLINE RECEPTOR-ASSOCIATED PROTEIN (RAPSN. OMIM:601592), which when mutated leads to congenital myasthenic syndrome. [Source: WormBase]rpy-1 is orthologous to the human gene 43KDA ACETYLCHOLINE RECEPTOR-ASSOCIATED PROTEIN (RAPSN. OMIM:601592), which when mutated leads to congenital myasthenic syndrome. [Source: WormBase] BY ORTHOLOGY TO:C18H9.7
16.6494 -27.93 0.00739586 1300 2 1 9 [+] picture button
CBG13202 ENSCBRT00000001116 T28D6.5a [Source:RefSeq_peptide;Acc:NP_499458]T28D6.5a [Source:RefSeq_peptide;Acc:NP_499458] BY ORTHOLOGY TO:T28D6.5b
14.2284 -16.41 0.00744586 1300 8 2 15 [+] picture button
CBG10721 ENSCBRT00000012474 F56B3.2a [Source:RefSeq_peptide;Acc:NP_499983]F56B3.2a [Source:RefSeq_peptide;Acc:NP_499983] BY ORTHOLOGY TO:F56B3.2b
14.3022 -19.99 0.00757745 1300 11 1 9 [+] picture button
CBG04897 ENSCBRT00000010134 F21H7.4 [Source:RefSeq_peptide;Acc:NP_507097]F21H7.4 [Source:RefSeq_peptide;Acc:NP_507097] BY ORTHOLOGY TO:F21H7.4
14.2076 -22.53 0.00774797 1300 4 1 4 [+] picture button
CBG13332 ENSCBRT00000001012 ZK673.6 [Source:RefSeq_peptide;Acc:NP_496249]ZK673.6 [Source:RefSeq_peptide;Acc:NP_496249] BY ORTHOLOGY TO:ZK673.6
16.5899 -25.92 0.00786883 1300 2 1 9 [+] picture button
CBG14514 ENSCBRT00000003468 ceh-1 encodes a protein that contains a homeobox domain. [Source: WormBase]ceh-1 encodes a protein that contains a homeobox domain. [Source: WormBase] BY ORTHOLOGY TO:F16H11.4
16.5673 -23.74 0.00805571 1300 7 2 21 [+] picture button
CBG18111 ENSCBRT00000003267 Dual oxidase maturation factor 2 (Dual oxidase activator 2). [Source:Uniprot/SWISSPROT;Acc:Q1HG44]Dual oxidase maturation factor 2 (Dual oxidase activator 2). [Source:Uniprot/SWISSPROT;Acc:Q1HG44] BY ORTHOLOGY TO:ENSPTRT00000012973
14.5878 -18.28 0.00845122 1300 3 2 11 [+] picture button

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Download table: GFF TXT
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