spacer

Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-39

201 hits found.


Page 1 of 5
1 2 3 4 5 next >>

Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
picture button picture button picture button picture button picture button picture button picture button picture button picture button picture button
CBG02924 ENSCBRT00000006127 ZK930.7 [Source:RefSeq_peptide;Acc:NP_496543]ZK930.7 [Source:RefSeq_peptide;Acc:NP_496543] BY ORTHOLOGY TO:ZK930.7
15.1706 -21.54 0.0000269916 1300 5 1 8 [+] picture button
CBG05460 ENSCBRT00000004771 voltage-gated potassium channelvoltage-gated potassium channel BY ORTHOLOGY TO:AAEL007104-RA
15.5278 -20.96 0.0000302395 1300 6 1 8 [+] picture button
CBG18919 ENSCBRT00000014164 F13H6.1 [Source:RefSeq_peptide;Acc:NP_504620]F13H6.1 [Source:RefSeq_peptide;Acc:NP_504620] BY ORTHOLOGY TO:F13H6.1
15.2745 -26.41 0.000086039 1300 7 1 13 [+] picture button
CBG18350 ENSCBRT00000001602 BTB/POZ domain-containing protein KCTD7. [Source:Uniprot/SWISSPROT;Acc:Q96MP8]BTB/POZ domain-containing protein KCTD7. [Source:Uniprot/SWISSPROT;Acc:Q96MP8] BY ORTHOLOGY TO:ENST00000380830
16.7838 -21.34 0.000305896 1300 4 1 12 [+] picture button
CBG00969 ENSCBRT00000002211 R53.5 [Source:RefSeq_peptide;Acc:NP_496154]R53.5 [Source:RefSeq_peptide;Acc:NP_496154] BY ORTHOLOGY TO:R53.5
15.3849 -22.7 0.000525118 1300 7 1 10 [+] picture button
CBG13202 ENSCBRT00000001116 T28D6.5a [Source:RefSeq_peptide;Acc:NP_499458]T28D6.5a [Source:RefSeq_peptide;Acc:NP_499458] BY ORTHOLOGY TO:T28D6.5b
15.5928 -20.79 0.000553185 1300 8 2 15 [+] picture button
CBG21716 ENSCBRT00000004570 C27B7.5 [Source:RefSeq_peptide;Acc:NP_501546]C27B7.5 [Source:RefSeq_peptide;Acc:NP_501546] BY ORTHOLOGY TO:C27B7.5
16.275 -22.06 0.000622107 1300 2 1 7 [+] picture button
CBG09724 ENSCBRT00000005685 F32D8.1 [Source:RefSeq_peptide;Acc:NP_505770]F32D8.1 [Source:RefSeq_peptide;Acc:NP_505770] BY ORTHOLOGY TO:F32D8.1
15.3201 -25.78 0.000968279 1300 3 2 10 [+] picture button
CBG12017 ENSCBRT00000011708 Probable histone-lysine N-methyltransferase lin-59 (EC 2.1.1.43) (Abnormal cell lineage protein 59). [Source:Uniprot/SWISSPROT;Acc:O44757]Probable histone-lysine N-methyltransferase lin-59 (EC 2.1.1.43) (Abnormal cell lineage protein 59). [Source:Uniprot/SWISSPROT;Acc:O44757] BY ORTHOLOGY TO:T12F5.4
15.3979 -25.5 0.000972882 1300 4 1 13 [+] picture button
CBG17943 ENSCBRT00000002990 NHL (ring finger b-box coiled coil) domain containing family member (nhl-2) [Source:RefSeq_peptide;Acc:NP_498026]NHL (ring finger b-box coiled coil) domain containing family member (nhl-2) [Source:RefSeq_peptide;Acc:NP_498026] BY ORTHOLOGY TO:F26F4.7
15.5881 -22.17 0.00112029 1300 5 2 9 [+] picture button
CBG00982 ENSCBRT00000002183 Y54G11B.1 [Source:RefSeq_peptide;Acc:NP_497004]Y54G11B.1 [Source:RefSeq_peptide;Acc:NP_497004] BY ORTHOLOGY TO:Y54G11B.1
16.1069 -24.64 0.00132801 1300 5 1 10 [+] picture button
CBG13063 ENSCBRT00000000091 DNA ligase 1 (EC 6.5.1.1) (DNA ligase I) (Polydeoxyribonucleotide synthase [ATP] 1). [Source:Uniprot/SWISSPROT;Acc:P18858]DNA ligase 1 (EC 6.5.1.1) (DNA ligase I) (Polydeoxyribonucleotide synthase [ATP] 1). [Source:Uniprot/SWISSPROT;Acc:P18858] BY ORTHOLOGY TO:ENSMODT00000016996
14.7814 -16.29 0.00146515 1300 6 1 8 [+] picture button
CBG09036 ENSCBRT00000008411 CDK5RAP1-like protein. [Source:Uniprot/SWISSPROT;Acc:Q9VGZ1]CDK5RAP1-like protein. [Source:Uniprot/SWISSPROT;Acc:Q9VGZ1] BY ORTHOLOGY TO:CG6345-RA
14.7257 -17.59 0.00163904 1300 7 1 4 [+] picture button
CBG11983 ENSCBRT00000011745 T28F2.7 [Source:RefSeq_peptide;Acc:NP_491196]T28F2.7 [Source:RefSeq_peptide;Acc:NP_491196] BY ORTHOLOGY TO:T28F2.7
15.4913 -23.8 0.00170187 1300 7 1 9 [+] picture button
CBG18111 ENSCBRT00000003267 Dual oxidase maturation factor 2 (Dual oxidase activator 2). [Source:Uniprot/SWISSPROT;Acc:Q1HG44]Dual oxidase maturation factor 2 (Dual oxidase activator 2). [Source:Uniprot/SWISSPROT;Acc:Q1HG44] BY ORTHOLOGY TO:ENSPTRT00000012973
15.5734 -21.74 0.00172748 1300 3 2 11 [+] picture button
CBG11969 ENSCBRT00000011755 T03F1.11 [Source:RefSeq_peptide;Acc:NP_491241]T03F1.11 [Source:RefSeq_peptide;Acc:NP_491241] BY ORTHOLOGY TO:T03F1.11
15.7382 -24.43 0.00185882 1300 4 1 9 [+] picture button
CBG21213 ENSCBRT00000000873 Zinc metalloproteinase nas-1 precursor (EC 3.4.24.21) (Nematode astacin 1). [Source:Uniprot/SWISSPROT;Acc:O62243]Zinc metalloproteinase nas-1 precursor (EC 3.4.24.21) (Nematode astacin 1). [Source:Uniprot/SWISSPROT;Acc:O62243] BY ORTHOLOGY TO:F45G2.1
15.3259 -21.74 0.00198696 1300 2 2 8 [+] picture button
CBG17724 ENSCBRT00000000169 Protein sidekick homolog precursor (Neuronal IgCAM protein 4). [Source:Uniprot/SWISSPROT;Acc:Q9N3X8]Protein sidekick homolog precursor (Neuronal IgCAM protein 4). [Source:Uniprot/SWISSPROT;Acc:Q9N3X8] BY ORTHOLOGY TO:Y42H9B.2
15.3004 -20.85 0.00203238 1300 5 2 9 [+] picture button
CBG16546 ENSCBRT00000014587 This gene encodes a homolog of mammalian TNX [Source: WormBase]This gene encodes a homolog of mammalian TNX [Source: WormBase] BY ORTHOLOGY TO:R13F6.4a
15.0955 -20.18 0.00221358 1300 4 1 7 [+] picture button
CBG07977 ENSCBRT00000004784 Y18D10A.1 [Source:RefSeq_peptide;Acc:NP_871800]Y18D10A.1 [Source:RefSeq_peptide;Acc:NP_871800] BY ORTHOLOGY TO:Y18D10A.1
14.5749 -16.69 0.00221585 1300 5 1 4 [+] picture button
CBG22506 ENSCBRT00000006031 R05C11.3 encodes a calcium-transporting ATPase. large-scale RNAi screens indicate that R05C11.3 activity is required for locomotion and normal rates of postembryonic growth. [Source: WormBase]R05C11.3 encodes a calcium-transporting ATPase. large-scale RNAi screens indicate that R05C11.3 activity is required for locomotion and normal rates of postembryonic growth. [Source: WormBase] BY ORTHOLOGY TO:R05C11.3
15.5317 -24.61 0.00222387 1300 5 2 7 [+] picture button
CBG00873 ENSCBRT00000003961 F42A8.1 [Source:RefSeq_peptide;Acc:NP_495991]F42A8.1 [Source:RefSeq_peptide;Acc:NP_495991] BY ORTHOLOGY TO:F42A8.1
15.0464 -23.3 0.00230665 1300 6 2 11 [+] picture button
CBG16636 ENSCBRT00000014668 F10E9.2 [Source:RefSeq_peptide;Acc:NP_498827]F10E9.2 [Source:RefSeq_peptide;Acc:NP_498827] BY ORTHOLOGY TO:F10E9.2
17.7431 -24.5 0.00248418 1300 6 1 11 [+] picture button
CBG09577 ENSCBRT00000005924 B0024.2 [Source:RefSeq_peptide;Acc:NP_505647]B0024.2 [Source:RefSeq_peptide;Acc:NP_505647] BY ORTHOLOGY TO:B0024.2
15.6924 -20.92 0.00249347 1300 7 1 9 [+] picture button
CBG06149 ENSCBRT00000008348 Endothelial differentiation-related factor 1 (EDF-1) (Multiprotein- bridging factor 1) (MBF1) (Calmodulin-associated peptide 19) (CAP-19). [Source:Uniprot/SWISSPROT;Acc:P69736]Endothelial differentiation-related factor 1 (EDF-1) (Multiprotein- bridging factor 1) (MBF1) (Calmodulin-associated peptide 19) (CAP-19). [Source:Uniprot/SWISSPROT;Acc:P69736] BY ORTHOLOGY TO:ENSRNOT00000022196
15.5928 -22.98 0.00287649 1300 2 1 9 [+] picture button
CBG23169 ENSCBRT00000012110 F47G9.3 [Source:RefSeq_peptide;Acc:NP_505875]F47G9.3 [Source:RefSeq_peptide;Acc:NP_505875] BY ORTHOLOGY TO:F47G9.3
15.3004 -20.48 0.00287907 1300 3 2 10 [+] picture button
CBG16935 ENSCBRT00000011856 Equilibrative nucleoside transporter 3 CG11010-PA [Source:RefSeq_peptide;Acc:NP_648608]Equilibrative nucleoside transporter 3 CG11010-PA [Source:RefSeq_peptide;Acc:NP_648608] BY ORTHOLOGY TO:CG11010-RA
14.6414 -19.57 0.00290613 1300 7 1 6 [+] picture button
CBG04117 ENSCBRT00000010085 Y71F9B.8 [Source:RefSeq_peptide;Acc:NP_491035]Y71F9B.8 [Source:RefSeq_peptide;Acc:NP_491035] BY ORTHOLOGY TO:Y71F9B.8
15.451 -19.32 0.00298838 1300 7 2 14 [+] picture button
CBG06411 ENSCBRT00000010928 Serpentine Receptor, class U family member (sru-42) [Source:RefSeq_peptide;Acc:NP_506894]Serpentine Receptor, class U family member (sru-42) [Source:RefSeq_peptide;Acc:NP_506894] BY ORTHOLOGY TO:C55A1.8
14.8131 -19.99 0.002992 1300 3 1 6 [+] picture button
CBG06842 ENSCBRT00000007268 eukaryotic translation initiation factor 3 subuniteukaryotic translation initiation factor 3 subunit BY ORTHOLOGY TO:AAEL009902-RA
15.203 -20.91 0.002992 1300 3 1 6 [+] picture button
CBG07050 ENSCBRT00000012418 K01A2.10 [Source:RefSeq_peptide;Acc:NP_493709]K01A2.10 [Source:RefSeq_peptide;Acc:NP_493709] BY ORTHOLOGY TO:K01A2.10
15.008 -23.47 0.002992 1300 4 1 9 [+] picture button
CBG13332 ENSCBRT00000001012 ZK673.6 [Source:RefSeq_peptide;Acc:NP_496249]ZK673.6 [Source:RefSeq_peptide;Acc:NP_496249] BY ORTHOLOGY TO:ZK673.6
17.5657 -29.19 0.00299404 1300 2 1 9 [+] picture button
CBG05355 ENSCBRT00000002814 DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6) (RPB1). [Source:Uniprot/SWISSPROT;Acc:P24928]DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6) (RPB1). [Source:Uniprot/SWISSPROT;Acc:P24928] BY ORTHOLOGY TO:ENSMMUT00000033227
15.4007 -25.54 0.00301322 1300 6 1 8 [+] picture button
CBG14603 ENSCBRT00000003279 uvt-2 encodes a protein that contains four EF-hand calcium binding motifs with similarity to human calmodulin. mRNA weakly expressed in L1 through L4 larval stages and in the adult hermaphrodite. [Source: WormBase]uvt-2 encodes a protein that contains four EF-hand calcium binding motifs with similarity to human calmodulin. mRNA weakly expressed in L1 through L4 larval stages and in the adult hermaphrodite. [Source: WormBase] BY ORTHOLOGY TO:C24H10.5
14.8131 -21.34 0.00307429 1300 2 2 9 [+] picture button
CBG07586 ENSCBRT00000011127 predicted gene, OTTMUSG00000008561 (OTTMUSG00000008561), mRNA [Source:RefSeq_dna;Acc:NM_001085549]predicted gene, OTTMUSG00000008561 (OTTMUSG00000008561), mRNA [Source:RefSeq_dna;Acc:NM_001085549] BY ORTHOLOGY TO:ENSMUST00000094894
14.5879 -19.65 0.00318144 1300 4 1 5 [+] picture button
CBG02851 ENSCBRT00000006221 F07A11.1 [Source:RefSeq_peptide;Acc:NP_496478]F07A11.1 [Source:RefSeq_peptide;Acc:NP_496478] BY ORTHOLOGY TO:F07A11.1
15.0388 -21.99 0.00333811 1300 5 1 8 [+] picture button
CBG11229 ENSCBRT00000014492 The dpy-2 gene encodes an unusual cuticular collagen that is required for maintaining the normal body length of the animal in later larval stages. dpy-2 interacts with other cuticular collagens such as dpy-10 and sqt-1, and suppresses mutations in glp-1, mup-1, and emb-5. [Source: WormBase]The dpy-2 gene encodes an unusual cuticular collagen that is required for maintaining the normal body length of the animal in later larval stages. dpy-2 interacts with other cuticular collagens such as dpy-10 and sqt-1, and suppresses mutations in glp-1, mup-1, and emb-5. [Source: WormBase] BY ORTHOLOGY TO:T14B4.6
14.5617 -17.38 0.00334722 1300 4 1 5 [+] picture button
CBG07649 ENSCBRT00000010628 F20D1.7 [Source:RefSeq_peptide;Acc:NP_510491]F20D1.7 [Source:RefSeq_peptide;Acc:NP_510491] BY ORTHOLOGY TO:F20D1.7
16.0056 -19.48 0.00348005 1300 5 1 8 [+] picture button
CBG13695 ENSCBRT00000012709 Y105C5A.23 [Source:RefSeq_peptide;Acc:NP_502887]Y105C5A.23 [Source:RefSeq_peptide;Acc:NP_502887] BY ORTHOLOGY TO:Y105C5A.23
15.0883 -20 0.0034837 1300 3 1 8 [+] picture button
CBG09223 ENSCBRT00000001839 acy-3 encodes a predicted member of the adenylyl cyclase family with highest similarity to human adenylate cyclase type 5. expressed in the support cells of ciliated neurons, in the head and tail ganglia, in two pairs of neurons in the retrovesicular ganglia, and in the spermatheca. [Source: WormBase]acy-3 encodes a predicted member of the adenylyl cyclase family with highest similarity to human adenylate cyclase type 5. expressed in the support cells of ciliated neurons, in the head and tail ganglia, in two pairs of neurons in the retrovesicular ganglia, and in the spermatheca. [Source: WormBase] BY ORTHOLOGY TO:C44F1.5
14.7245 -17.63 0.00355076 1300 5 2 11 [+] picture button
CBG01358 ENSCBRT00000002240 Seven TM Receptor family member (str-131) [Source:RefSeq_peptide;Acc:NP_505084]Seven TM Receptor family member (str-131) [Source:RefSeq_peptide;Acc:NP_505084] BY ORTHOLOGY TO:C09H5.6
14.7245 -20.27 0.00356257 1300 4 1 9 [+] picture button
CBG15235 ENSCBRT00000010405 gei-16 can encode a protein with similarity to the B20 antigen of the parasitic nematode Onchocerca volvulus. GEI-16 is required for ventral enclosure and elongation during embryonic development, larval development, and normal rates of postembryonic growth. GEI-16 interacts with GEX-3, a homolog of mammalian protein ligands of the small GTPase Rac1 that is also essential for embryonic morphogenesis. [Source: WormBase]gei-16 can encode a protein with similarity to the B20 antigen of the parasitic nematode Onchocerca volvulus. GEI-16 is required for ventral enclosure and elongation during embryonic development, larval development, and normal rates of postembryonic growth. GEI-16 interacts with GEX-3, a homolog of mammalian protein ligands of the small GTPase Rac1 that is also essential for embryonic morphogenesis. [Source: WormBase] BY ORTHOLOGY TO:T17H7.4d
14.7105 -21.23 0.00367811 1300 5 1 5 [+] picture button
CBG03854 ENSCBRT00000008695 Enhancer of Ksr-1 Lethality family member (ekl-2) [Source:RefSeq_peptide;Acc:NP_492622]Enhancer of Ksr-1 Lethality family member (ekl-2) [Source:RefSeq_peptide;Acc:NP_492622] BY ORTHOLOGY TO:F52F12.6
14.7526 -23.04 0.00372366 1300 5 1 10 [+] picture button
CBG03556 ENSCBRT00000006633 Y43F4A.1a [Source:RefSeq_peptide;Acc:NP_001022870]Y43F4A.1a [Source:RefSeq_peptide;Acc:NP_001022870] BY ORTHOLOGY TO:Y43F4A.1a
14.6732 -16.55 0.00375959 1300 2 1 6 [+] picture button
CBG03655 ENSCBRT00000008752 SCO cytochrome oxidase deficient homolog 1 (yeast) [Source:MarkerSymbol;Acc:MGI:106362]SCO cytochrome oxidase deficient homolog 1 (yeast) [Source:MarkerSymbol;Acc:MGI:106362] BY ORTHOLOGY TO:ENSMUST00000092996
14.3954 -22.08 0.00385048 1300 4 1 7 [+] picture button
CBG18715 ENSCBRT00000011450 PhosphoLipase C family member (plc-3) [Source:RefSeq_peptide;Acc:NP_496205]PhosphoLipase C family member (plc-3) [Source:RefSeq_peptide;Acc:NP_496205] BY ORTHOLOGY TO:T01E8.3
14.8429 -20.9 0.00390308 1300 2 1 4 [+] picture button
CBG04127 ENSCBRT00000010047 F40E3.2 [Source:RefSeq_peptide;Acc:NP_491018]F40E3.2 [Source:RefSeq_peptide;Acc:NP_491018] BY ORTHOLOGY TO:F40E3.2
17.2928 -32.58 0.00398932 1300 5 1 10 [+] picture button
CBG12084 ENSCBRT00000011645 cpn-3 encodes a calponin homolog, most closely related to its paralog CPN-4 in C. elegans. CPN-3 is more similar to the calponin paralogs transgelin (SM22 alpha) or neuronal protein NP25 than to calponin per se. [Source: WormBase]cpn-3 encodes a calponin homolog, most closely related to its paralog CPN-4 in C. elegans. CPN-3 is more similar to the calponin paralogs transgelin (SM22 alpha) or neuronal protein NP25 than to calponin per se. [Source: WormBase] BY ORTHOLOGY TO:F28H1.2
15.219 -22.45 0.00425511 1300 3 1 6 [+] picture button
CBG06069 ENSCBRT00000008485 This gene encodes a protein containing a DnaJ ('J') domain. [Source: WormBase]This gene encodes a protein containing a DnaJ ('J') domain. [Source: WormBase] BY ORTHOLOGY TO:B0035.2
15.3108 -27.27 0.00429991 1300 3 1 3 [+] picture button
CBG04021 ENSCBRT00000009926 F33D11.8 [Source:RefSeq_peptide;Acc:NP_491699]F33D11.8 [Source:RefSeq_peptide;Acc:NP_491699] BY ORTHOLOGY TO:F33D11.8
14.8131 -18.34 0.00438116 1300 5 1 6 [+] picture button

Page 1 of 5
1 2 3 4 5 next >>

Download table: GFF TXT
spacer
spacer