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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-38

198 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG05460 ENSCBRT00000004771 voltage-gated potassium channelvoltage-gated potassium channel BY ORTHOLOGY TO:AAEL007104-RA
15.1347 -24.44 1e-06 1300 6 1 8 [+] picture button
CBG10721 ENSCBRT00000012474 F56B3.2a [Source:RefSeq_peptide;Acc:NP_499983]F56B3.2a [Source:RefSeq_peptide;Acc:NP_499983] BY ORTHOLOGY TO:F56B3.2b
16.0654 -26.87 5.98492e-05 1300 11 1 9 [+] picture button
CBG07437 ENSCBRT00000011094 H06A10.1 [Source:RefSeq_peptide;Acc:NP_510255]H06A10.1 [Source:RefSeq_peptide;Acc:NP_510255] BY ORTHOLOGY TO:H06A10.1
14.3887 -26.24 6.56691e-05 1300 5 2 3 [+] picture button
CBG11380 ENSCBRT00000014029 col-43 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens. [Source: WormBase]col-43 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens. [Source: WormBase] BY ORTHOLOGY TO:ZC513.8
14.5208 -26.28 7.46542e-05 1300 8 2 8 [+] picture button
CBG17724 ENSCBRT00000000169 Protein sidekick homolog precursor (Neuronal IgCAM protein 4). [Source:Uniprot/SWISSPROT;Acc:Q9N3X8]Protein sidekick homolog precursor (Neuronal IgCAM protein 4). [Source:Uniprot/SWISSPROT;Acc:Q9N3X8] BY ORTHOLOGY TO:Y42H9B.2
14.6182 -28.67 9.96215e-05 1300 5 2 9 [+] picture button
CBG11983 ENSCBRT00000011745 T28F2.7 [Source:RefSeq_peptide;Acc:NP_491196]T28F2.7 [Source:RefSeq_peptide;Acc:NP_491196] BY ORTHOLOGY TO:T28F2.7
15.8835 -27.75 0.000137551 1300 7 1 9 [+] picture button
CBG07012 ENSCBRT00000012388 C01B12.7 [Source:RefSeq_peptide;Acc:NP_493637]C01B12.7 [Source:RefSeq_peptide;Acc:NP_493637] BY ORTHOLOGY TO:C01B12.7
14.4821 -22.78 0.000149275 1300 5 1 3 [+] picture button
CBG23169 ENSCBRT00000012110 F47G9.3 [Source:RefSeq_peptide;Acc:NP_505875]F47G9.3 [Source:RefSeq_peptide;Acc:NP_505875] BY ORTHOLOGY TO:F47G9.3
16.08 -22.26 0.000285316 1300 3 2 10 [+] picture button
CBG18350 ENSCBRT00000001602 BTB/POZ domain-containing protein KCTD7. [Source:Uniprot/SWISSPROT;Acc:Q96MP8]BTB/POZ domain-containing protein KCTD7. [Source:Uniprot/SWISSPROT;Acc:Q96MP8] BY ORTHOLOGY TO:ENST00000380830
15.2225 -18.34 0.000320084 1300 4 1 12 [+] picture button
CBG13202 ENSCBRT00000001116 T28D6.5a [Source:RefSeq_peptide;Acc:NP_499458]T28D6.5a [Source:RefSeq_peptide;Acc:NP_499458] BY ORTHOLOGY TO:T28D6.5b
15.7877 -21.81 0.000360314 1300 8 2 15 [+] picture button
CBG09229 ENSCBRT00000001841 toh-1 encodes an astacin-like metalloprotease. TOH-1 is predicted to function as a secreted protease. experiments that specifically assessed toh-1's role in molting indicate that toh-1(RNAi) causes no abnormal phenotypes. [Source: WormBase]toh-1 encodes an astacin-like metalloprotease. TOH-1 is predicted to function as a secreted protease. experiments that specifically assessed toh-1's role in molting indicate that toh-1(RNAi) causes no abnormal phenotypes. [Source: WormBase] BY ORTHOLOGY TO:T24A11.3
15.507 -21.09 0.000759379 1300 5 2 14 [+] picture button
CBG21626 ENSCBRT00000003833 Progestin and adipoQ receptor family member 3 (Progestin and adipoQ receptor family member III). [Source:Uniprot/SWISSPROT;Acc:Q6TCH7]Progestin and adipoQ receptor family member 3 (Progestin and adipoQ receptor family member III). [Source:Uniprot/SWISSPROT;Acc:Q6TCH7] BY ORTHOLOGY TO:ENSGACT00000023505
15.3004 -26.96 0.00087067 1300 5 2 14 [+] picture button
CBG03546 ENSCBRT00000006642 Syntaxin 16 CG1467-PA [Source:RefSeq_peptide;Acc:NP_523420]Syntaxin 16 CG1467-PA [Source:RefSeq_peptide;Acc:NP_523420] BY ORTHOLOGY TO:CG1467-RA
18.5276 -34.02 0.000977586 1300 3 1 10 [+] picture button
CBG20408 ENSCBRT00000003627 cell division cycle 40 homolog [Source:RefSeq_peptide;Acc:NP_001006407]cell division cycle 40 homolog [Source:RefSeq_peptide;Acc:NP_001006407] BY ORTHOLOGY TO:ENSGALT00000024299
18.4106 -26.69 0.00110545 1300 1 1 8 [+] picture button
CBG09472 ENSCBRT00000006458 C46G7.2 [Source:RefSeq_peptide;Acc:NP_500904]C46G7.2 [Source:RefSeq_peptide;Acc:NP_500904] BY ORTHOLOGY TO:C46G7.2
14.9026 -25.5 0.00135817 1300 2 1 1 [+] picture button
CBG15252 ENSCBRT00000010428 W06E11.2 [Source:RefSeq_peptide;Acc:NP_497228]W06E11.2 [Source:RefSeq_peptide;Acc:NP_497228] BY ORTHOLOGY TO:W06E11.2
14.6494 -19.86 0.00184942 1300 5 1 4 [+] picture button
CBG11540 ENSCBRT00000013797 grl-17 encodes a hedgehog-like protein, with an N-terminal signal sequence, a central proline-rich low-complexity region, and a C-terminal Ground-like (Grl) domain. GRL-17 is expressed in pharynx, rectal epithelium, amphid socket cells, larval arcade cells, and larval hypodermis. the Grl domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins. [Source: WormBase]grl-17 encodes a hedgehog-like protein, with an N-terminal signal sequence, a central proline-rich low-complexity region, and a C-terminal Ground-like (Grl) domain. GRL-17 is expressed in pharynx, rectal epithelium, amphid socket cells, larval arcade cells, and larval hypodermis. the Grl domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins. [Source: WormBase] BY ORTHOLOGY TO:C56A3.1
14.8923 -24.98 0.00204592 1300 4 1 4 [+] picture button
CBG01698 ENSCBRT00000005576 ZK180.1 [Source:RefSeq_peptide;Acc:NP_500579]ZK180.1 [Source:RefSeq_peptide;Acc:NP_500579] BY ORTHOLOGY TO:ZK180.1
14.9106 -23.27 0.00205738 1300 3 1 6 [+] picture button
CBG18919 ENSCBRT00000014164 F13H6.1 [Source:RefSeq_peptide;Acc:NP_504620]F13H6.1 [Source:RefSeq_peptide;Acc:NP_504620] BY ORTHOLOGY TO:F13H6.1
15.1766 -17.64 0.00208368 1300 7 1 13 [+] picture button
CBG21213 ENSCBRT00000000873 Zinc metalloproteinase nas-1 precursor (EC 3.4.24.21) (Nematode astacin 1). [Source:Uniprot/SWISSPROT;Acc:O62243]Zinc metalloproteinase nas-1 precursor (EC 3.4.24.21) (Nematode astacin 1). [Source:Uniprot/SWISSPROT;Acc:O62243] BY ORTHOLOGY TO:F45G2.1
14.9354 -23.33 0.00223196 1300 2 2 8 [+] picture button
CBG20550 ENSCBRT00000000051 F40A3.6 [Source:RefSeq_peptide;Acc:NP_505032]F40A3.6 [Source:RefSeq_peptide;Acc:NP_505032] BY ORTHOLOGY TO:F40A3.6
14.8221 -19.51 0.00232847 1300 3 1 3 [+] picture button
CBG19030 ENSCBRT00000014073 T15B7.15 [Source:RefSeq_peptide;Acc:NP_504739]T15B7.15 [Source:RefSeq_peptide;Acc:NP_504739] BY ORTHOLOGY TO:T15B7.15
14.6182 -26.97 0.00238402 1300 4 2 4 [+] picture button
CBG13575 ENSCBRT00000007730 Nuclear Hormone Receptor family member (nhr-146) [Source:RefSeq_peptide;Acc:NP_741322]Nuclear Hormone Receptor family member (nhr-146) [Source:RefSeq_peptide;Acc:NP_741322] BY ORTHOLOGY TO:Y41D4B.26
15.1055 -23.71 0.00238593 1300 5 2 7 [+] picture button
CBG12017 ENSCBRT00000011708 Probable histone-lysine N-methyltransferase lin-59 (EC 2.1.1.43) (Abnormal cell lineage protein 59). [Source:Uniprot/SWISSPROT;Acc:O44757]Probable histone-lysine N-methyltransferase lin-59 (EC 2.1.1.43) (Abnormal cell lineage protein 59). [Source:Uniprot/SWISSPROT;Acc:O44757] BY ORTHOLOGY TO:T12F5.4
14.8131 -20.29 0.00247923 1300 4 1 13 [+] picture button
CBG16556 ENSCBRT00000014582 This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins. [Source: WormBase]This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins. [Source: WormBase] BY ORTHOLOGY TO:R05H11.1
17.5657 -27.48 0.00268365 1300 7 1 17 [+] picture button
CBG03117 ENSCBRT00000006960 clh-1 encodes two CLC-type chloride channels via alternative splicing, homologous to human CLC1 (OMIM:118425) and CLC2 (OMIM:600570). CLH-1a and CLH-1b are required for maintenance of normal body shape. null mutations of clh-1 cause abnormal alae and a wider body than normal, with the body phenotype being reversible by culture medium of high osmolarity. [Source: WormBase]clh-1 encodes two CLC-type chloride channels via alternative splicing, homologous to human CLC1 (OMIM:118425) and CLC2 (OMIM:600570). CLH-1a and CLH-1b are required for maintenance of normal body shape. null mutations of clh-1 cause abnormal alae and a wider body than normal, with the body phenotype being reversible by culture medium of high osmolarity. [Source: WormBase] BY ORTHOLOGY TO:T27D12.2a
14.7391 -23.21 0.00275503 1300 4 1 5 [+] picture button
CBG17943 ENSCBRT00000002990 NHL (ring finger b-box coiled coil) domain containing family member (nhl-2) [Source:RefSeq_peptide;Acc:NP_498026]NHL (ring finger b-box coiled coil) domain containing family member (nhl-2) [Source:RefSeq_peptide;Acc:NP_498026] BY ORTHOLOGY TO:F26F4.7
14.9018 -19 0.00303622 1300 5 2 9 [+] picture button
CBG04076 ENSCBRT00000009864 Probable cytochrome P450 CYP36A1 (EC 1.14.-.-). [Source:Uniprot/SWISSPROT;Acc:P90771]Probable cytochrome P450 CYP36A1 (EC 1.14.-.-). [Source:Uniprot/SWISSPROT;Acc:P90771] BY ORTHOLOGY TO:C34B7.3
14.6195 -14.95 0.00316529 1300 5 1 8 [+] picture button
CBG18736 ENSCBRT00000014526 Y64G10A.6 [Source:RefSeq_peptide;Acc:NP_502736]Y64G10A.6 [Source:RefSeq_peptide;Acc:NP_502736] BY ORTHOLOGY TO:Y64G10A.6
14.6893 -21.7 0.00322164 1300 3 1 8 [+] picture button
CBG09575 ENSCBRT00000005928 B0024.15 [Source:RefSeq_peptide;Acc:NP_741615]B0024.15 [Source:RefSeq_peptide;Acc:NP_741615] BY ORTHOLOGY TO:B0024.15
14.4233 -24.88 0.00349778 1300 6 1 4 [+] picture button
CBG22922 ENSCBRT00000008761 Polymerase (DNA directed) kappa. [Source:Uniprot/SPTREMBL;Acc:Q6DJA4]Polymerase (DNA directed) kappa. [Source:Uniprot/SPTREMBL;Acc:Q6DJA4] BY ORTHOLOGY TO:ENSXETT00000011088
14.3143 -16.98 0.00360619 1300 2 2 2 [+] picture button
CBG06149 ENSCBRT00000008348 Endothelial differentiation-related factor 1 (EDF-1) (Multiprotein- bridging factor 1) (MBF1) (Calmodulin-associated peptide 19) (CAP-19). [Source:Uniprot/SWISSPROT;Acc:P69736]Endothelial differentiation-related factor 1 (EDF-1) (Multiprotein- bridging factor 1) (MBF1) (Calmodulin-associated peptide 19) (CAP-19). [Source:Uniprot/SWISSPROT;Acc:P69736] BY ORTHOLOGY TO:ENSRNOT00000022196
15.6902 -22.26 0.00375002 1300 2 1 9 [+] picture button
CBG02924 ENSCBRT00000006127 ZK930.7 [Source:RefSeq_peptide;Acc:NP_496543]ZK930.7 [Source:RefSeq_peptide;Acc:NP_496543] BY ORTHOLOGY TO:ZK930.7
14.877 -22.1 0.00375623 1300 5 1 8 [+] picture button
CBG16211 ENSCBRT00000012614 W03G11.2 [Source:RefSeq_peptide;Acc:NP_510022]W03G11.2 [Source:RefSeq_peptide;Acc:NP_510022] BY ORTHOLOGY TO:W03G11.2
14.2708 -21.79 0.0038964 1300 4 1 3 [+] picture button
CBG18111 ENSCBRT00000003267 Dual oxidase maturation factor 2 (Dual oxidase activator 2). [Source:Uniprot/SWISSPROT;Acc:Q1HG44]Dual oxidase maturation factor 2 (Dual oxidase activator 2). [Source:Uniprot/SWISSPROT;Acc:Q1HG44] BY ORTHOLOGY TO:ENSPTRT00000012973
14.982 -20.68 0.00397865 1300 3 2 11 [+] picture button
ENSCBRT00000005514 W08E12.8 [Source:RefSeq_peptide;Acc:NP_500310]W08E12.8 [Source:RefSeq_peptide;Acc:NP_500310] BY ORTHOLOGY TO:W08E12.8
14.5208 -23.55 0.00407607 1300 2 1 2 [+] picture button
CBG23028 ENSCBRT00000008852 hypothetical protein LOC445096 [Source:RefSeq_peptide;Acc:NP_001003490]hypothetical protein LOC445096 [Source:RefSeq_peptide;Acc:NP_001003490] BY ORTHOLOGY TO:ENSDART00000008416
15.0381 -20.31 0.00409287 1300 6 1 8 [+] picture button
CBG14649 ENSCBRT00000006905 Rap guanine nucleotide exchange factor 1 (Guanine nucleotide-releasing factor 2) (C3G protein) (CRK SH3-binding GNRP). [Source:Uniprot/SWISSPROT;Acc:Q13905]Rap guanine nucleotide exchange factor 1 (Guanine nucleotide-releasing factor 2) (C3G protein) (CRK SH3-binding GNRP). [Source:Uniprot/SWISSPROT;Acc:Q13905] BY ORTHOLOGY TO:ENSGALT00000005891
14.1459 -24.58 0.00410732 1300 2 1 1 [+] picture button
CBG02988 ENSCBRT00000006076 F38A3.1 [Source:RefSeq_peptide;Acc:NP_496361]F38A3.1 [Source:RefSeq_peptide;Acc:NP_496361] BY ORTHOLOGY TO:F38A3.1
14.3345 -23.34 0.00415879 1300 6 2 7 [+] picture button
CBG16636 ENSCBRT00000014668 F10E9.2 [Source:RefSeq_peptide;Acc:NP_498827]F10E9.2 [Source:RefSeq_peptide;Acc:NP_498827] BY ORTHOLOGY TO:F10E9.2
17.1348 -21.08 0.00421597 1300 6 1 11 [+] picture button
CBG06229 ENSCBRT00000008245 asparagine synthetase domain containing 1 [Source:RefSeq_peptide;Acc:NP_001029852]asparagine synthetase domain containing 1 [Source:RefSeq_peptide;Acc:NP_001029852] BY ORTHOLOGY TO:ENSBTAT00000000622
14.8131 -26.97 0.00422792 1300 8 1 4 [+] picture button
CBG03420 ENSCBRT00000007182 col-2 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies). expression peaks during the molt that separates the L2 larval and dauer stages as the dauer cuticle is being formed, and mRNA is expressed at low levels in post-dauer L4 larvae and in adult animals. [Source: WormBase]col-2 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies). expression peaks during the molt that separates the L2 larval and dauer stages as the dauer cuticle is being formed, and mRNA is expressed at low levels in post-dauer L4 larvae and in adult animals. [Source: WormBase] BY ORTHOLOGY TO:W01B6.7
14.6182 -18.22 0.00437717 1300 3 1 5 [+] picture button
CBG12758 ENSCBRT00000013717 ser-3 encodes a putative homolog of mammalian 5-HT4 metabotropic serotonin receptors. SER-3 is required for normal inhibition of movement by 5-HT, with ser-3 mutants being hyperactive and excessively curling their male tails (but this phenotype is reversed by exogenous 5-HT, with ser-3 mutants then becoming sluggish). SER-3 activity is required for normally high brood sizes and for embryonic development, and weakly required for pharyngeal pumping. SER-3 is expressed in pharynx, head and tail neurons, nerve ring, and intestine. [Source: WormBase]ser-3 encodes a putative homolog of mammalian 5-HT4 metabotropic serotonin receptors. SER-3 is required for normal inhibition of movement by 5-HT, with ser-3 mutants being hyperactive and excessively curling their male tails (but this phenotype is reversed by exogenous 5-HT, with ser-3 mutants then becoming sluggish). SER-3 activity is required for normally high brood sizes and for embryonic development, and weakly required for pharyngeal pumping. SER-3 is expressed in pharynx, head and tail neurons, nerve ring, and intestine. [Source: WormBase] BY ORTHOLOGY TO:K02F2.6
14.4719 -20.64 0.0045298 1300 6 2 12 [+] picture button
CBG04117 ENSCBRT00000010085 Y71F9B.8 [Source:RefSeq_peptide;Acc:NP_491035]Y71F9B.8 [Source:RefSeq_peptide;Acc:NP_491035] BY ORTHOLOGY TO:Y71F9B.8
15.35 -20.11 0.00455111 1300 7 2 14 [+] picture button
CBG11337 ENSCBRT00000014373 F20D6.5 [Source:RefSeq_peptide;Acc:NP_505104]F20D6.5 [Source:RefSeq_peptide;Acc:NP_505104] BY ORTHOLOGY TO:F20D6.5
14.6459 -25.89 0.0046539 1300 7 2 7 [+] picture button
CBG16600 ENSCBRT00000014550 B0280.13 [Source:RefSeq_peptide;Acc:NP_741212]B0280.13 [Source:RefSeq_peptide;Acc:NP_741212] BY ORTHOLOGY TO:B0280.13
17.0209 -27.26 0.00474998 1300 2 1 8 [+] picture button
CBG12070 ENSCBRT00000011655 Muscle M-line assembly protein unc-89 (Uncoordinated protein 89). [Source:Uniprot/SWISSPROT;Acc:O01761]Muscle M-line assembly protein unc-89 (Uncoordinated protein 89). [Source:Uniprot/SWISSPROT;Acc:O01761] BY ORTHOLOGY TO:C09D1.1b
17.002 -26.94 0.00484472 1300 2 1 10 [+] picture button
CBG01358 ENSCBRT00000002240 Seven TM Receptor family member (str-131) [Source:RefSeq_peptide;Acc:NP_505084]Seven TM Receptor family member (str-131) [Source:RefSeq_peptide;Acc:NP_505084] BY ORTHOLOGY TO:C09H5.6
16.9674 -28.45 0.00502365 1300 4 1 9 [+] picture button
CBG09724 ENSCBRT00000005685 F32D8.1 [Source:RefSeq_peptide;Acc:NP_505770]F32D8.1 [Source:RefSeq_peptide;Acc:NP_505770] BY ORTHOLOGY TO:F32D8.1
14.3443 -17.86 0.00543488 1300 3 2 10 [+] picture button
CBG06854 ENSCBRT00000007285 Ras-related protein Rab-6.1. [Source:Uniprot/SWISSPROT;Acc:P34213]Ras-related protein Rab-6.1. [Source:Uniprot/SWISSPROT;Acc:P34213] BY ORTHOLOGY TO:F59B2.7
14.4233 -18.27 0.00548659 1300 5 2 11 [+] picture button

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